Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060088.seq
         (663 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)               124   5e-29
SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)              36   0.039
SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)               35   0.051
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)                   31   0.63 
SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)                  31   0.84 
SB_3342| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.6  
SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)            29   3.4  
SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_56636| Best HMM Match : Toxin_4 (HMM E-Value=2.4)                   29   4.5  
SB_6230| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.5  
SB_5942| Best HMM Match : Sec7 (HMM E-Value=3.1e-09)                   29   4.5  
SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8)                     28   5.9  
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_8252| Best HMM Match : rve (HMM E-Value=0.13)                       28   5.9  
SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08)                 28   7.8  
SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29)           28   7.8  
SB_3422| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.8  

>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
          Length = 299

 Score =  124 bits (300), Expect = 5e-29
 Identities = 67/156 (42%), Positives = 81/156 (51%)
 Frame = +2

Query: 86  VGVFREE*DGAGCSQAPPVRVQGAHPSGPGQ*CSRFYVQELEAALLREQGGWSPNQSESW 265
           + VF E  + AG +  P V      P       S     + +   + +  G   + +ESW
Sbjct: 6   ITVFNENGESAGQTTLPAVFKAPIRPDLVNFVHSNIAKNKRQPYAVNKLAGHQTS-AESW 64

Query: 266 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXX 445
           GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK WR+WH               
Sbjct: 65  GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRKWHTKVNVQQRRFAVCSA 124

Query: 446 XXXXXXXXXXQARGHIIEKIPSFPWL*PDKVQEINK 553
                      ARGH IEKI   P +  D ++ + K
Sbjct: 125 LAASALPALIMARGHRIEKIAEVPLVISDAIESVTK 160


>SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)
          Length = 628

 Score = 35.5 bits (78), Expect = 0.039
 Identities = 19/54 (35%), Positives = 22/54 (40%)
 Frame = +2

Query: 233 GGWSPNQSESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 394
           GGW       WG G+    + R  GGG  R   G +G M  GG    P   W R
Sbjct: 14  GGWGQGPGGGWGRGQG-GGMGRGPGGGWGRGSGGGWGRMQGGGMGRGPGGGWGR 66


>SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)
          Length = 1098

 Score = 35.1 bits (77), Expect = 0.051
 Identities = 19/54 (35%), Positives = 22/54 (40%)
 Frame = +2

Query: 233 GGWSPNQSESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 394
           GGW       WG G+    + R  GGG  R   G +G M  GG    P   W R
Sbjct: 258 GGWGQGPGGGWGRGQGRG-MGRGPGGGWGRGSGGGWGRMQGGGMGRGPGGGWGR 310


>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
          Length = 453

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 359 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 276
           HH     RH  R + +HHH H E+ R+H
Sbjct: 325 HHQRHRHRHRHR-HRHHHHHHHEYNRRH 351


>SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)
          Length = 1080

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 245  PNQSESWGTGRAVARIPR-VRGGGTHRSGQGAFGNMCRGGR 364
            P  SE   +G ++ R PR  RGGG    G G  G   RGGR
Sbjct: 982  PTPSEPSSSGSSIVRRPRRRRGGGGGGGGGGGGGGGRRGGR 1022


>SB_3342| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 919

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/59 (30%), Positives = 32/59 (54%)
 Frame = -2

Query: 368 TYVHHDTCYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQTGLVTSLLAHAVGLPRVLGHR 192
           +Y HH   +RRH      YHHH H +    H  + +I T L+ S+++ A+ +  ++ +R
Sbjct: 261 SYYHHHH-HRRHHLN--HYHHHYHLD---DHFIFIIIITTLIVSIISVAITVHILIPYR 313


>SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -2

Query: 368 TYVHHDTCYRRHPDRTYEYHHHGHA 294
           TY H DT  R+HPD     H   HA
Sbjct: 123 TYTHQDTQMRKHPDTQIYVHAPRHA 147


>SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)
          Length = 694

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 9/35 (25%), Positives = 14/35 (40%)
 Frame = -2

Query: 371 RTYVHHDTCYRRHPDRTYEYHHHGHAEFGRQHVQY 267
           R + HH   +  H    + +HHH H      H  +
Sbjct: 209 RHHQHHQHHHHHHHQHNHHHHHHNHHHHHHHHYHH 243


>SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 511

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 344 YRRHPDRTYEYHHHGHAEFGRQHVQYPMI 258
           Y +HP  T+ YH H      R H Q+P +
Sbjct: 232 YHQHPQVTHRYHQHPQVTH-RYHQQHPQV 259



 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 344 YRRHPDRTYEYHHHGHAEFGRQHVQYPMI 258
           Y +HP  T+ YHH  H +   ++ Q+P +
Sbjct: 413 YHQHPQLTHRYHHQ-HPQVIHRYHQHPQV 440


>SB_56636| Best HMM Match : Toxin_4 (HMM E-Value=2.4)
          Length = 434

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 224 REQGGWSPNQSESWGTGRAVARIPRVRGGG 313
           R +  W P +S +W   +A+   P VR GG
Sbjct: 120 RPEAAWGPKRSGAWLGSQALVPQPAVRSGG 149


>SB_6230| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 191

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/65 (27%), Positives = 28/65 (43%)
 Frame = -2

Query: 323 TYEYHHHGHAEFGRQHVQYPMIQTGLVTSLLAHAVGLPRVLGHRNVNIIDQVRTDGRLEH 144
           +Y+  H G  +  R+H Q  + +T    S      GL +V   +   IID+    G  + 
Sbjct: 26  SYKKEHRGLRKVSRKHAQRILDETAGHASYKKEHRGLRKVSREQAQRIIDETAGHGSYKK 85

Query: 143 EREGL 129
           E  GL
Sbjct: 86  EYRGL 90


>SB_5942| Best HMM Match : Sec7 (HMM E-Value=3.1e-09)
          Length = 304

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/45 (22%), Positives = 20/45 (44%)
 Frame = -2

Query: 365 YVHHDTCYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQTGLVTSLL 231
           Y HH   +  H    + +HHH H       +    + T ++T+++
Sbjct: 158 YYHHHLLHHHHHHWHHHHHHHRHHHHSFTTIATTTVITTIITTVI 202


>SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8)
          Length = 193

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 359 HHDTCYRRHPDRTYEYHHH 303
           HH   YR H  + Y +HHH
Sbjct: 96  HHHQHYRHHRHQHYRHHHH 114


>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3486

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 139  GRGLAAPCTVSLFSEYTDTKGRATDRLI 56
            G+GL   C+V+L S Y  T+G+   RL+
Sbjct: 3163 GKGLTTWCSVNLDSVYLSTEGKEVYRLV 3190


>SB_8252| Best HMM Match : rve (HMM E-Value=0.13)
          Length = 264

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 365 YVHHDTCYRRHPDRTYEYHHHGH 297
           Y HH   +RR   R + +HHH H
Sbjct: 233 YHHHHHHHRRRRRRRHHHHHHHH 255


>SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08)
          Length = 839

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 359 HHDTCYRRHPDRTYEYHHH 303
           HH   + RH  R + YHHH
Sbjct: 570 HHHLHHHRHHHRHHHYHHH 588


>SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29)
          Length = 1779

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 359 HHDTCYRRHPDRTYEYHHHGH 297
           HH   + RH DR + + HH H
Sbjct: 340 HHRNKHYRHHDRNHHHRHHHH 360


>SB_3422| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1270

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = -1

Query: 657 ILPLTRHEDAKTLYTLRNIRPCLEAPQEDDKPVWXLLISWTLSGYNQGKLGIFS 496
           +  LT +E  K + +L+  R C   P+ED   V       TL G       +FS
Sbjct: 426 VASLTLNEAGKLIGSLKERRSCAHQPEEDPLEVLDCFERETLEGSRSRGFKVFS 479


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,838,369
Number of Sequences: 59808
Number of extensions: 405185
Number of successful extensions: 1179
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1122
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)