Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060088.seq
         (663 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   119   2e-27
U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical pr...    29   3.9  
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil...    29   3.9  
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical...    29   3.9  
Z19154-9|CAA79552.2|  559|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical pr...    28   6.8  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  119 bits (287), Expect = 2e-27
 Identities = 55/102 (53%), Positives = 64/102 (62%)
 Frame = +2

Query: 248 NQSESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXX 427
           + +ESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG MFAP K +RRWH         
Sbjct: 61  HSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQKR 120

Query: 428 XXXXXXXXXXXXXXXXQARGHIIEKIPSFPWL*PDKVQEINK 553
                           QARGH+I+++   P +  DKV+   K
Sbjct: 121 YAVSSAIAASGIPALLQARGHVIDQVAEVPLVVSDKVESFRK 162



 Score = 58.8 bits (136), Expect = 3e-09
 Identities = 30/61 (49%), Positives = 40/61 (65%)
 Frame = +3

Query: 72  ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQT 251
           ARPLV+VY EK E  Q   + LP VF+ PIRPDLV+ +   + +N RQ + V+ +AG Q 
Sbjct: 3   ARPLVTVYDEKYEATQSQIR-LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQH 61

Query: 252 S 254
           S
Sbjct: 62  S 62


>U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical
           protein F53A9.9 protein.
          Length = 147

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 359 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 276
           HHD  +++H  + ++ HHHGH   G  H
Sbjct: 120 HHDGHHKKHGRKEHD-HHHGH-HHGHHH 145


>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
            ATPase protein.
          Length = 2395

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
 Frame = +2

Query: 233  GGWSPNQSESWGTGRAVARIPRV-----RGGGTHRSGQGAFGNMCRGGRMFAP 376
            G   P+Q +     + +  IP+V      GGG  R G G+   M RGGR+  P
Sbjct: 2128 GSQQPHQQQQQQPQQRIQYIPQVTGSGNNGGGGGRGGYGSTLVMPRGGRVVRP 2180


>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
            protein Y111B2A.22 protein.
          Length = 2395

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
 Frame = +2

Query: 233  GGWSPNQSESWGTGRAVARIPRV-----RGGGTHRSGQGAFGNMCRGGRMFAP 376
            G   P+Q +     + +  IP+V      GGG  R G G+   M RGGR+  P
Sbjct: 2128 GSQQPHQQQQQQPQQRIQYIPQVTGSGNNGGGGGRGGYGSTLVMPRGGRVVRP 2180


>Z19154-9|CAA79552.2|  559|Caenorhabditis elegans Hypothetical
           protein C40H1.1 protein.
          Length = 559

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -2

Query: 356 HDTCYRRHPDRTYEYHHHGHAEFGRQHVQ-YPMIQTGLVTSLLAH 225
           H +C + + +  ++  H G  E  +   Q YPM++TG  T LL H
Sbjct: 471 HASCLQYYCEGCWDRMHIGKNEDNKLEDQHYPMVRTGDQTRLLKH 515


>Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical
           protein C29A12.4 protein.
          Length = 1560

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 496 NNVSSSLNERWDAGSSNGCRQGRSPLSEVDATVPTP 389
           N VS+ + + ++A +S G   G S  +E+D   P P
Sbjct: 625 NGVSTKIGQEFEASNSTGIELGCSLSNELDICEPNP 660


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,218,221
Number of Sequences: 27780
Number of extensions: 285944
Number of successful extensions: 945
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)