Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060087.seq
         (575 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    22   4.3  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    22   4.3  
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    21   7.5  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   7.5  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   9.9  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   9.9  

>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +2

Query: 146 SYFASHNTTREYIAHSSKVHSVGWSCDGRKLASGS 250
           S FA++N       HS  VH+ G         SGS
Sbjct: 60  SVFAANNAEFPEFVHSGMVHNDGTQLMPSPTVSGS 94


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +2

Query: 146 SYFASHNTTREYIAHSSKVHSVGWSCDGRKLASGS 250
           S FA++N       HS  VH+ G         SGS
Sbjct: 60  SVFAANNAEFPEFVHSGMVHNDGTQLMPSPTVSGS 94


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = +1

Query: 496 CGWGQGVXVPFSVPK 540
           CGW Q + +P   P+
Sbjct: 580 CGWPQHMLIPKGTPE 594


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -1

Query: 500 PQWCCPLGAQAIXRFXPLV 444
           PQW  P+GA  +  F   V
Sbjct: 275 PQWPSPIGASHLPYFAAAV 293


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 12/37 (32%), Positives = 15/37 (40%)
 Frame = +3

Query: 285 EQIESRFYFQRPHRLCRSTLLACVTX*XPEYSERRQI 395
           EQ+  R  F  PHRL   +   C     P    R+ I
Sbjct: 594 EQLTWRRNFHGPHRLAARSRRCCYHAVAPGTDIRQSI 630


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 12/37 (32%), Positives = 15/37 (40%)
 Frame = +3

Query: 285 EQIESRFYFQRPHRLCRSTLLACVTX*XPEYSERRQI 395
           EQ+  R  F  PHRL   +   C     P    R+ I
Sbjct: 486 EQLTWRRNFHGPHRLAARSRRCCYHAVAPGTDIRQSI 522


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,774
Number of Sequences: 336
Number of extensions: 2459
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14308417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)