BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV060087.seq (575 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces p... 43 3e-05 SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 42 9e-05 SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 37 0.002 SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po... 35 0.007 SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 35 0.010 SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc... 33 0.030 SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git... 33 0.030 SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa... 32 0.052 SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 32 0.069 SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom... 32 0.069 SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy... 31 0.091 SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ... 31 0.16 SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc... 30 0.21 SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces p... 30 0.21 SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces pombe... 30 0.21 SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po... 30 0.28 SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 30 0.28 SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 29 0.64 SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ... 29 0.64 SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 29 0.64 SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 29 0.64 SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||... 28 0.85 SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 28 0.85 SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 28 0.85 SPCC584.14 |mug160||conserved eukaryotic protein|Schizosaccharom... 28 0.85 SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 28 1.1 SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha... 27 1.5 SPCC126.01c ||SPCC576.18c|conserved fungal protein|Schizosacchar... 27 1.5 SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 27 2.0 SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 27 2.0 SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 27 2.0 SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1... 27 2.6 SPAC806.02c |||Par A family ATPase iron cluster assembly protein... 26 3.4 SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 26 3.4 SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate syntha... 26 3.4 SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 26 3.4 SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 26 4.5 SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc... 25 6.0 SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyce... 25 6.0 SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo... 25 7.9 SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 25 7.9 >SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces pombe|chr 3|||Manual Length = 309 Score = 43.2 bits (97), Expect = 3e-05 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 2/82 (2%) Frame = +1 Query: 259 SVAIFNLERS--RLSQDFIFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXA 432 SV ++N +R + + + +G+ G V+QL W + L K +R W RS K Sbjct: 47 SVLVWNSDRLDFKFTTELGNRGY-GLVEQLVWDPTHSDRLMAVYAGKMIRFWDFRSAKPI 105 Query: 433 ATIPTKGXNLNIAWAPNGQHHC 498 A I + N+ W+P+G + C Sbjct: 106 AEIESNYENIYATWSPSGNYCC 127 Score = 26.2 bits (55), Expect = 3.4 Identities = 10/27 (37%), Positives = 15/27 (55%) Frame = +2 Query: 170 TREYIAHSSKVHSVGWSCDGRKLASGS 250 TR+ + S+GW+ G +LAS S Sbjct: 17 TRDLQGQQGPIRSLGWNLSGSRLASSS 43 >SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces pombe|chr 1|||Manual Length = 1323 Score = 41.5 bits (93), Expect = 9e-05 Identities = 17/40 (42%), Positives = 23/40 (57%) Frame = +1 Query: 301 DFIFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRS 420 +F+ GHT +V + WH P +L+T S D SV W RS Sbjct: 315 EFMLHGHTRAVTDMNWHRQNPDVLATCSIDSSVHCWDLRS 354 >SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharomyces pombe|chr 2|||Manual Length = 854 Score = 36.7 bits (81), Expect = 0.002 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Frame = +1 Query: 316 GHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHK-XAATIPTKGXNLNIAWAPNGQH 492 GH G V L +++S LL++ S DK+VR W S +P L++A+ P+G+ Sbjct: 465 GHEGPVSSLSFNSSGS-LLASGSWDKTVRIWDIFSRSGIVEPLPIPSDVLSLAFHPDGKE 523 Query: 493 HC 498 C Sbjct: 524 VC 525 Score = 27.5 bits (58), Expect = 1.5 Identities = 13/33 (39%), Positives = 15/33 (45%) Frame = +2 Query: 152 FASHNTTREYIAHSSKVHSVGWSCDGRKLASGS 250 FA REY H + S+ WS D R S S Sbjct: 133 FAPFVLHREYTGHFDDIVSISWSADSRFFISTS 165 >SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces pombe|chr 2|||Manual Length = 713 Score = 35.1 bits (77), Expect = 0.007 Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 2/83 (2%) Frame = +1 Query: 301 DFIFK--GHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAATIPTKGXNLNIAW 474 +F+++ GHT V L + L+++ D+++R W + T+PT +++ Sbjct: 206 EFLYELHGHTSFVYSLTY-IHNQQLIASCGEDRTIRIWKGKECLQCITLPTTSV-WSVSS 263 Query: 475 APNGQHHCGWGQGVXVPFSVPKL 543 PNG CG G F+V K+ Sbjct: 264 LPNGDLVCGSSDGFVRIFTVDKV 286 >SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13 |Schizosaccharomyces pombe|chr 3|||Manual Length = 777 Score = 34.7 bits (76), Expect = 0.010 Identities = 24/76 (31%), Positives = 36/76 (47%) Frame = +1 Query: 262 VAIFNLERSRLSQDFIFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAATI 441 V +++L SR +F+GH+ + L + + LLS S DK+V+ W + TI Sbjct: 171 VRLWDLNSSRSMA--VFEGHSSVIRGLTFEPTGSFLLS-GSRDKTVQVWNIKKRSAVRTI 227 Query: 442 PTKGXNLNIAWAPNGQ 489 P I W NGQ Sbjct: 228 PVFHSVEAIGWV-NGQ 242 >SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces pombe|chr 3|||Manual Length = 430 Score = 33.1 bits (72), Expect = 0.030 Identities = 12/44 (27%), Positives = 23/44 (52%) Frame = +1 Query: 307 IFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAAT 438 + KGHT LCW+ + P L+T + D+ + W ++ ++ Sbjct: 177 VLKGHTAEGFGLCWNPNLPGNLATGAEDQVICLWDVQTQSFTSS 220 Score = 27.9 bits (59), Expect = 1.1 Identities = 11/38 (28%), Positives = 22/38 (57%) Frame = +1 Query: 307 IFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRS 420 + + H+ +++ + + LL+TAS DK+V W R+ Sbjct: 276 VIQAHSKAINAVAINPFNDYLLATASADKTVALWDLRN 313 >SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git5|Schizosaccharomyces pombe|chr 2|||Manual Length = 305 Score = 33.1 bits (72), Expect = 0.030 Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 2/95 (2%) Frame = +1 Query: 256 KSVAIFNLERSRLSQDFIFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAA 435 K+ +++E+++ + KGH + L + S P L T DK + W R+ A Sbjct: 127 KTCMFWDIEQAKAIS--VLKGHEMDIVSLDFLPSNPNLFVTGGCDKLAKLWDLRAAYCCA 184 Query: 436 TIPTKGXNLN-IAWAP-NGQHHCGWGQGVXVPFSV 534 T P ++N I++ P N G G+ F + Sbjct: 185 TFPGNTSDINSISFFPSNADFVTGAEDGIARCFDI 219 >SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosaccharomyces pombe|chr 2|||Manual Length = 297 Score = 32.3 bits (70), Expect = 0.052 Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Frame = +1 Query: 256 KSVAIFNLERSRLSQDFIFKGHTGSVDQLCW-HASXPXLLSTASGDKSVRXW 408 +++ +F++E ++ + +GH+G V QL W H +L++AS D V W Sbjct: 31 QTIKVFSIENNQQTLLETLRGHSGPVWQLGWAHPKFGTILASASYDGHVIVW 82 >SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 480 Score = 31.9 bits (69), Expect = 0.069 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 4/59 (6%) Frame = +1 Query: 310 FKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAATIPTK---GXNLNI-AW 474 F HT +V+ L W S + S+ S D + R W R+ + + + G ++N+ +W Sbjct: 287 FLSHTAAVEDLQWSPSEKNVFSSCSCDGTFRIWDVRNKQKTSALTVNAHPGVDVNVLSW 345 >SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharomyces pombe|chr 1|||Manual Length = 398 Score = 31.9 bits (69), Expect = 0.069 Identities = 18/57 (31%), Positives = 29/57 (50%) Frame = +1 Query: 247 VIRKSVAIFNLERSRLSQDFIFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTR 417 ++ SV I++L +S+ + GHT ++ +CW +S L TAS D W R Sbjct: 43 LVNGSVVIWDLSTFSVSR--VLTGHTRAIQSVCW-SSCDRFLLTASRDWKCILWDLR 96 >SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces pombe|chr 2|||Manual Length = 314 Score = 31.5 bits (68), Expect = 0.091 Identities = 15/53 (28%), Positives = 28/53 (52%) Frame = +1 Query: 262 VAIFNLERSRLSQDFIFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRS 420 V ++++ S F+GHT +V + +H L+T+S D +V+ W R+ Sbjct: 63 VRLYDINTSSQMPLMTFEGHTNNVTAIAFHCDGKW-LATSSEDGTVKVWDMRA 114 >SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces pombe|chr 1|||Manual Length = 509 Score = 30.7 bits (66), Expect = 0.16 Identities = 12/34 (35%), Positives = 18/34 (52%) Frame = +1 Query: 307 IFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXW 408 + +GH V+ + WH P LL+T D SV + Sbjct: 287 VLRGHEKDVNCVTWHPLYPNLLTTGGSDGSVNHY 320 >SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces pombe|chr 2|||Manual Length = 340 Score = 30.3 bits (65), Expect = 0.21 Identities = 19/58 (32%), Positives = 27/58 (46%) Frame = +1 Query: 313 KGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAATIPTKGXNLNIAWAPNG 486 KGH G V+ L LL++ S D +++ W +RS TI K +A A G Sbjct: 132 KGHAGVVNALDVLKVGSELLTSVSDDCTMKVWDSRSKDCIKTIEEKYPLTAVAIAQQG 189 >SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces pombe|chr 2|||Manual Length = 352 Score = 30.3 bits (65), Expect = 0.21 Identities = 14/25 (56%), Positives = 16/25 (64%) Frame = +2 Query: 188 HSSKVHSVGWSCDGRKLASGSFVKA 262 H V SV WS DG K+ASGS K+ Sbjct: 73 HQGPVLSVNWSRDGTKVASGSVDKS 97 Score = 29.5 bits (63), Expect = 0.37 Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 9/76 (11%) Frame = +1 Query: 265 AIFNLERSRLSQDFIFKGHTG---------SVDQLCWHASXPXLLSTASGDKSVRXWXTR 417 AI N++ SQ+F F+ H SV+ + +H STA D + W Sbjct: 226 AIQNIDEKNASQNFSFRCHRNQAGNSADVYSVNSIAFHPQY-GTFSTAGSDGTFSFWDKD 284 Query: 418 SHKXAATIPTKGXNLN 465 SH+ + P G ++ Sbjct: 285 SHQRLKSYPNVGGTIS 300 >SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 516 Score = 30.3 bits (65), Expect = 0.21 Identities = 14/62 (22%), Positives = 29/62 (46%) Frame = +1 Query: 310 FKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAATIPTKGXNLNIAWAPNGQ 489 F H+ V L W++ P +L + S DK+ + R + ++ N+AW + + Sbjct: 293 FTYHSDKVSCLDWYSKAPSVLLSGSYDKTAKIADLRLEEAPSSFQVTSDVENVAWDQHSE 352 Query: 490 HH 495 ++ Sbjct: 353 NN 354 Score = 27.1 bits (57), Expect = 2.0 Identities = 11/34 (32%), Positives = 18/34 (52%) Frame = +1 Query: 313 KGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXT 414 + H G + L + S P ++T S D+ V+ W T Sbjct: 380 QAHDGPISCLSVNPSVPSFVATGSTDRVVKLWNT 413 >SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces pombe|chr 1|||Manual Length = 556 Score = 29.9 bits (64), Expect = 0.28 Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 2/60 (3%) Frame = +1 Query: 304 FIFKGHTGSVDQLCWHASXPXLLSTASG--DKSVRXWXTRSHKXAATIPTKGXNLNIAWA 477 + F H +V + W +L++ G D++++ W T+ I T N+ W+ Sbjct: 410 YSFHNHIAAVKAITWSPHQRGILASGGGTADRTIKLWNTQRGSMLHNIDTGSQVCNLLWS 469 >SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 502 Score = 29.9 bits (64), Expect = 0.28 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%) Frame = +1 Query: 316 GHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAATIPTKGXNLN-IAWAPN 483 GH G++ + S L T SGD + R W + AT+ ++ +AWAP+ Sbjct: 132 GHDGTIISAQFSPSTSSRLVTGSGDFTARLWDCDTQTPIATMKGHTNWVSCVAWAPD 188 Score = 29.9 bits (64), Expect = 0.28 Identities = 12/27 (44%), Positives = 19/27 (70%) Frame = +2 Query: 188 HSSKVHSVGWSCDGRKLASGSFVKALQ 268 H +V +V WS DG+++ASG KA++ Sbjct: 472 HEDQVFAVDWSPDGQRVASGGADKAVR 498 Score = 25.8 bits (54), Expect = 4.5 Identities = 11/24 (45%), Positives = 16/24 (66%) Frame = +1 Query: 370 LSTASGDKSVRXWXTRSHKXAATI 441 ++TAS D SVR W ++ K AT+ Sbjct: 404 IATASFDSSVRLWDGKTGKFLATL 427 >SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosaccharomyces pombe|chr 1|||Manual Length = 614 Score = 28.7 bits (61), Expect = 0.64 Identities = 15/62 (24%), Positives = 29/62 (46%) Frame = +1 Query: 304 FIFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAATIPTKGXNLNIAWAPN 483 ++F GH + L + + ++S SGD++ R W + + + + IA +PN Sbjct: 396 YVFSGHEQDIYSLDFSHNGRFIVS-GSGDRTARLWDVETGQCILKLEIENGVTAIAISPN 454 Query: 484 GQ 489 Q Sbjct: 455 DQ 456 Score = 25.4 bits (53), Expect = 6.0 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = +2 Query: 188 HSSKVHSVGWSCDGRKLASGS 250 H + V SV +S DGR+ ASGS Sbjct: 579 HKNSVISVCFSPDGRQFASGS 599 >SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces pombe|chr 1|||Manual Length = 314 Score = 28.7 bits (61), Expect = 0.64 Identities = 13/33 (39%), Positives = 21/33 (63%) Frame = +2 Query: 170 TREYIAHSSKVHSVGWSCDGRKLASGSFVKALQ 268 T +++ H+S V SV S D R++ SGS K ++ Sbjct: 98 THQFVGHTSDVLSVSISPDNRQVVSGSRDKTIK 130 Score = 27.1 bits (57), Expect = 2.0 Identities = 12/32 (37%), Positives = 17/32 (53%) Frame = +1 Query: 313 KGHTGSVDQLCWHASXPXLLSTASGDKSVRXW 408 +GH+G V L P +L + S DKS+ W Sbjct: 12 EGHSGWVTSLSTAPENPDILLSGSRDKSIILW 43 >SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosaccharomyces pombe|chr 1|||Manual Length = 586 Score = 28.7 bits (61), Expect = 0.64 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%) Frame = +2 Query: 98 DSKHSQAPIEDLSELRSY-FASHNTTREYIAHSSKVHSVGWSCDGRKLASGS 250 D K+ +ED ++R + A R H +++S+ +S DG+ L SGS Sbjct: 345 DGKYLATGVED-QQIRIWDIAQKRVYRLLTGHEQEIYSLDFSKDGKTLVSGS 395 Score = 27.9 bits (59), Expect = 1.1 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = +2 Query: 140 LRSYFASHNTTREYIAHSSKVHSVGWSCDGRKLASGS 250 +R + +S + H V+SV +S DG+ L SGS Sbjct: 441 IRIWTSSGTLVEQLHGHEESVYSVAFSPDGKYLVSGS 477 Score = 26.6 bits (56), Expect = 2.6 Identities = 16/78 (20%), Positives = 37/78 (47%) Frame = +1 Query: 256 KSVAIFNLERSRLSQDFIFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAA 435 + + I+++ + R+ + + GH + L + L+S SGD++V W + + Sbjct: 356 QQIRIWDIAQKRVYR--LLTGHEQEIYSLDFSKDGKTLVS-GSGDRTVCLWDVEAGEQKL 412 Query: 436 TIPTKGXNLNIAWAPNGQ 489 + T + ++P+GQ Sbjct: 413 ILHTDDGVTTVMFSPDGQ 430 >SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizosaccharomyces pombe|chr 1|||Manual Length = 506 Score = 28.7 bits (61), Expect = 0.64 Identities = 12/34 (35%), Positives = 22/34 (64%) Frame = +1 Query: 307 IFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXW 408 + +GH SV+ + ++S L+ TAS D+++R W Sbjct: 342 VLRGHLASVNSV-QYSSKTGLIVTASSDRTLRTW 374 >SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||Manual Length = 404 Score = 28.3 bits (60), Expect = 0.85 Identities = 12/34 (35%), Positives = 18/34 (52%) Frame = +1 Query: 316 GHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTR 417 GHTG+V + W +L++ S D + R W R Sbjct: 187 GHTGNVLAVDWCPKNEFVLASGSADGTCRLWDIR 220 Score = 27.9 bits (59), Expect = 1.1 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 3/62 (4%) Frame = +1 Query: 244 WVIRK---SVAIFNLERSRLSQDFIFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXT 414 W IRK S A +L L + H G+V+ L W + L S + D+ +R W Sbjct: 217 WDIRKVSSSFACMDLHNKYLPSNQTNISHYGTVNGLAWTSDARYLASCGTDDR-IRVWNM 275 Query: 415 RS 420 S Sbjct: 276 ES 277 Score = 27.1 bits (57), Expect = 2.0 Identities = 12/58 (20%), Positives = 25/58 (43%) Frame = +1 Query: 319 HTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAATIPTKGXNLNIAWAPNGQH 492 H + L W + +++S D +++ W + + A T + + AW+P H Sbjct: 102 HKFGITDLHWFPFDNGIFTSSSFDHTLKVWDVSTLQEAYTFTMEDMIYSHAWSPIASH 159 >SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosaccharomyces pombe|chr 1|||Manual Length = 601 Score = 28.3 bits (60), Expect = 0.85 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%) Frame = +1 Query: 280 ERSRL-SQDFIFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXW 408 ER +L Q +F+GHT +V W+ +L++ D + W Sbjct: 66 ERGKLPDQVNLFRGHTAAVLDTDWNPFHDQVLASGGDDSKIMIW 109 Score = 27.5 bits (58), Expect = 1.5 Identities = 9/32 (28%), Positives = 20/32 (62%) Frame = +1 Query: 313 KGHTGSVDQLCWHASXPXLLSTASGDKSVRXW 408 KGH+ V + +H + +L+++S D +++ W Sbjct: 131 KGHSRKVGLVQYHPTAANVLASSSADNTIKLW 162 >SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pombe|chr 2|||Manual Length = 380 Score = 28.3 bits (60), Expect = 0.85 Identities = 12/31 (38%), Positives = 19/31 (61%) Frame = +1 Query: 316 GHTGSVDQLCWHASXPXLLSTASGDKSVRXW 408 GH + Q+ W A+ L++AS DK++R W Sbjct: 94 GHYRGISQVKW-ATGSKYLASASDDKTIRIW 123 >SPCC584.14 |mug160||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 431 Score = 28.3 bits (60), Expect = 0.85 Identities = 14/37 (37%), Positives = 20/37 (54%) Frame = -3 Query: 261 AFTNDPEASFLPSQDQPTECTLDECAMYSRVVLCDAK 151 AF D E FLP P +CT E A++S + + D + Sbjct: 86 AFLMDNEDFFLPVPMNPAQCTALEIALWSLIRVDDQR 122 >SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccharomyces pombe|chr 1|||Manual Length = 846 Score = 27.9 bits (59), Expect = 1.1 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 3/67 (4%) Frame = +1 Query: 319 HTGSVDQLCWHASXPXLLSTASG-DKSVRXWXTRSHKXAATIPTKGXN-LN-IAWAPNGQ 489 H G V LC + S + + G DK++R W + S+K + I + LN + W P Q Sbjct: 220 HNGVV--LCVNYSPNGVFLASCGRDKTIRIWDSTSNKKKSLITINNVSPLNCVRWRPANQ 277 Query: 490 HHCGWGQ 510 G Q Sbjct: 278 QSRGSNQ 284 >SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccharomyces pombe|chr 2|||Manual Length = 809 Score = 27.5 bits (58), Expect = 1.5 Identities = 11/26 (42%), Positives = 16/26 (61%) Frame = +2 Query: 173 REYIAHSSKVHSVGWSCDGRKLASGS 250 +E H+ V+++ WS DG L SGS Sbjct: 39 KELTGHTGCVNTLDWSADGEFLLSGS 64 Score = 26.6 bits (56), Expect = 2.6 Identities = 14/31 (45%), Positives = 16/31 (51%) Frame = +1 Query: 316 GHTGSVDQLCWHASXPXLLSTASGDKSVRXW 408 GHTG V+ L W A LLS S D + W Sbjct: 43 GHTGCVNTLDWSADGEFLLS-GSDDTRLIVW 72 >SPCC126.01c ||SPCC576.18c|conserved fungal protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 369 Score = 27.5 bits (58), Expect = 1.5 Identities = 14/33 (42%), Positives = 17/33 (51%) Frame = +1 Query: 310 FKGHTGSVDQLCWHASXPXLLSTASGDKSVRXW 408 F GH +V L + L TAS DK+VR W Sbjct: 218 FWGHQSNVYCLLFDPQDSEALWTASADKTVREW 250 >SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizosaccharomyces pombe|chr 2|||Manual Length = 1224 Score = 27.1 bits (57), Expect = 2.0 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 5/58 (8%) Frame = +1 Query: 322 TGSVDQLCWHASXPXLLSTASGDKS---VRXWXTRSHKXAATIPT--KGXNLNIAWAP 480 TG+V+ + WH + L+TA D + W R I T + L+++W P Sbjct: 213 TGAVNSIAWHPNNATRLATAIDDNRNPIILTWDLRQPTVPQNILTGHQKAALSLSWCP 270 Score = 26.2 bits (55), Expect = 3.4 Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 1/78 (1%) Frame = +1 Query: 262 VAIFNLERSRLSQDFIFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAATI 441 + ++L + + Q+ I GH + L W P L ++ D W + + + Sbjct: 241 ILTWDLRQPTVPQN-ILTGHQKAALSLSWCPEDPTFLLSSGKDGRAMVWNVETGESLGSF 299 Query: 442 PTKG-XNLNIAWAPNGQH 492 P G +W P+ + Sbjct: 300 PRSGNWYTKSSWCPSNSN 317 >SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosaccharomyces pombe|chr 1|||Manual Length = 576 Score = 27.1 bits (57), Expect = 2.0 Identities = 10/38 (26%), Positives = 13/38 (34%) Frame = +1 Query: 313 KGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHK 426 KGH + CW + T D + R W K Sbjct: 194 KGHIAEITDGCWQPDSSQIFLTTGYDSTARIWDVNRTK 231 >SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe|chr 1|||Manual Length = 488 Score = 27.1 bits (57), Expect = 2.0 Identities = 11/20 (55%), Positives = 14/20 (70%) Frame = +2 Query: 188 HSSKVHSVGWSCDGRKLASG 247 HSS+V + W DG +LASG Sbjct: 303 HSSEVCGLAWRSDGLQLASG 322 >SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1|Schizosaccharomyces pombe|chr 1|||Manual Length = 431 Score = 26.6 bits (56), Expect = 2.6 Identities = 9/34 (26%), Positives = 19/34 (55%) Frame = +1 Query: 319 HTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRS 420 H+G + + ++ +L+T S DK++ W R+ Sbjct: 280 HSGPIHSVAFNPHNDFILATCSTDKTIALWDLRN 313 >SPAC806.02c |||Par A family ATPase iron cluster assembly protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 608 Score = 26.2 bits (55), Expect = 3.4 Identities = 10/26 (38%), Positives = 17/26 (65%) Frame = +2 Query: 188 HSSKVHSVGWSCDGRKLASGSFVKAL 265 H ++V + WSC+G LA+ S K++ Sbjct: 377 HENEVKCIAWSCNGNYLATCSRDKSV 402 >SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces pombe|chr 1|||Manual Length = 2244 Score = 26.2 bits (55), Expect = 3.4 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%) Frame = +2 Query: 71 FYMITKAMKDSKHSQAPIEDLSELRSYF--ASHNTTREYIAHSSKV 202 FY + MKD K +ED S L+ Y A H+ + E + + V Sbjct: 46 FYSVNGEMKDYKLMALELEDKSVLQGYSFGADHSVSGELVFQTGMV 91 >SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate synthase Arg5 |Schizosaccharomyces pombe|chr 2|||Manual Length = 415 Score = 26.2 bits (55), Expect = 3.4 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%) Frame = -2 Query: 565 VPPVTTYKVLVPKMEPKLP-VPTRNGVA 485 VPPVT ++ ++PK +P P P +N +A Sbjct: 20 VPPVTNHERILPK-QPSFPTAPAQNEIA 46 >SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|Schizosaccharomyces pombe|chr 1|||Manual Length = 462 Score = 26.2 bits (55), Expect = 3.4 Identities = 13/42 (30%), Positives = 20/42 (47%) Frame = +1 Query: 319 HTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAATIP 444 H + + W + L+T+S D +V+ W R A TIP Sbjct: 348 HIRQIVAMAWSPNG-YQLATSSADDTVKIWDLRKVSLAHTIP 388 >SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pombe|chr 2|||Manual Length = 1207 Score = 25.8 bits (54), Expect = 4.5 Identities = 14/49 (28%), Positives = 25/49 (51%) Frame = +1 Query: 262 VAIFNLERSRLSQDFIFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXW 408 V ++ + S+ + +GH +V +H +LS AS DK++R W Sbjct: 236 VKLWRMTASKAWEVDTCRGHFNNVSCCLFHPHQELILS-ASEDKTIRVW 283 >SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosaccharomyces pombe|chr 1|||Manual Length = 962 Score = 25.4 bits (53), Expect = 6.0 Identities = 14/59 (23%), Positives = 29/59 (49%) Frame = +1 Query: 250 IRKSVAIFNLERSRLSQDFIFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHK 426 ++K + +++ + D + GHT +V + +L TAS D +++ W R+ K Sbjct: 194 LQKDIQLWDCVSKKRITDLV--GHTDNVRDILISDDGRTIL-TASSDATIKLWSLRAQK 249 >SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyces pombe|chr 1|||Manual Length = 398 Score = 25.4 bits (53), Expect = 6.0 Identities = 14/47 (29%), Positives = 22/47 (46%) Frame = +2 Query: 98 DSKHSQAPIEDLSELRSYFASHNTTREYIAHSSKVHSVGWSCDGRKL 238 DS + PI+D L + + H+ T+ HS + V S D K+ Sbjct: 187 DSTFAPPPIQDALVLGADYVVHSATKYLAGHSDVLAGVTASKDRSKI 233 >SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 651 Score = 25.0 bits (52), Expect = 7.9 Identities = 15/58 (25%), Positives = 29/58 (50%) Frame = +2 Query: 95 KDSKHSQAPIEDLSELRSYFASHNTTREYIAHSSKVHSVGWSCDGRKLASGSFVKALQ 268 ++S S+AP S + + N +++ AHS + S+ +S LA+ S K ++ Sbjct: 300 QNSAFSKAPENTESSVNQNYIVGNLVKQFQAHSEYITSLDFSHPFGTLATASTDKTVK 357 >SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Schizosaccharomyces pombe|chr 1|||Manual Length = 507 Score = 25.0 bits (52), Expect = 7.9 Identities = 9/36 (25%), Positives = 18/36 (50%) Frame = +1 Query: 316 GHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSH 423 GH V+ + ++ P ++A D +VR W + + Sbjct: 468 GHVKCVNYVAYNPVDPYQFASAGDDNTVRIWSNKDN 503 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,161,747 Number of Sequences: 5004 Number of extensions: 39878 Number of successful extensions: 194 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 155 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 194 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 246098644 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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