Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060087.seq
(575 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces p... 43 3e-05
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 42 9e-05
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 37 0.002
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po... 35 0.007
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 35 0.010
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc... 33 0.030
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git... 33 0.030
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa... 32 0.052
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 32 0.069
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom... 32 0.069
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy... 31 0.091
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ... 31 0.16
SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc... 30 0.21
SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces p... 30 0.21
SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces pombe... 30 0.21
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po... 30 0.28
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 30 0.28
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 29 0.64
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ... 29 0.64
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 29 0.64
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 29 0.64
SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||... 28 0.85
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 28 0.85
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 28 0.85
SPCC584.14 |mug160||conserved eukaryotic protein|Schizosaccharom... 28 0.85
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 28 1.1
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha... 27 1.5
SPCC126.01c ||SPCC576.18c|conserved fungal protein|Schizosacchar... 27 1.5
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 27 2.0
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 27 2.0
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 27 2.0
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1... 27 2.6
SPAC806.02c |||Par A family ATPase iron cluster assembly protein... 26 3.4
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 26 3.4
SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate syntha... 26 3.4
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 26 3.4
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 26 4.5
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc... 25 6.0
SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyce... 25 6.0
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo... 25 7.9
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 25 7.9
>SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 309
Score = 43.2 bits (97), Expect = 3e-05
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Frame = +1
Query: 259 SVAIFNLERS--RLSQDFIFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXA 432
SV ++N +R + + + +G+ G V+QL W + L K +R W RS K
Sbjct: 47 SVLVWNSDRLDFKFTTELGNRGY-GLVEQLVWDPTHSDRLMAVYAGKMIRFWDFRSAKPI 105
Query: 433 ATIPTKGXNLNIAWAPNGQHHC 498
A I + N+ W+P+G + C
Sbjct: 106 AEIESNYENIYATWSPSGNYCC 127
Score = 26.2 bits (55), Expect = 3.4
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 170 TREYIAHSSKVHSVGWSCDGRKLASGS 250
TR+ + S+GW+ G +LAS S
Sbjct: 17 TRDLQGQQGPIRSLGWNLSGSRLASSS 43
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 41.5 bits (93), Expect = 9e-05
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +1
Query: 301 DFIFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRS 420
+F+ GHT +V + WH P +L+T S D SV W RS
Sbjct: 315 EFMLHGHTRAVTDMNWHRQNPDVLATCSIDSSVHCWDLRS 354
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 36.7 bits (81), Expect = 0.002
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +1
Query: 316 GHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHK-XAATIPTKGXNLNIAWAPNGQH 492
GH G V L +++S LL++ S DK+VR W S +P L++A+ P+G+
Sbjct: 465 GHEGPVSSLSFNSSGS-LLASGSWDKTVRIWDIFSRSGIVEPLPIPSDVLSLAFHPDGKE 523
Query: 493 HC 498
C
Sbjct: 524 VC 525
Score = 27.5 bits (58), Expect = 1.5
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = +2
Query: 152 FASHNTTREYIAHSSKVHSVGWSCDGRKLASGS 250
FA REY H + S+ WS D R S S
Sbjct: 133 FAPFVLHREYTGHFDDIVSISWSADSRFFISTS 165
>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 35.1 bits (77), Expect = 0.007
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Frame = +1
Query: 301 DFIFK--GHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAATIPTKGXNLNIAW 474
+F+++ GHT V L + L+++ D+++R W + T+PT +++
Sbjct: 206 EFLYELHGHTSFVYSLTY-IHNQQLIASCGEDRTIRIWKGKECLQCITLPTTSV-WSVSS 263
Query: 475 APNGQHHCGWGQGVXVPFSVPKL 543
PNG CG G F+V K+
Sbjct: 264 LPNGDLVCGSSDGFVRIFTVDKV 286
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 34.7 bits (76), Expect = 0.010
Identities = 24/76 (31%), Positives = 36/76 (47%)
Frame = +1
Query: 262 VAIFNLERSRLSQDFIFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAATI 441
V +++L SR +F+GH+ + L + + LLS S DK+V+ W + TI
Sbjct: 171 VRLWDLNSSRSMA--VFEGHSSVIRGLTFEPTGSFLLS-GSRDKTVQVWNIKKRSAVRTI 227
Query: 442 PTKGXNLNIAWAPNGQ 489
P I W NGQ
Sbjct: 228 PVFHSVEAIGWV-NGQ 242
>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 430
Score = 33.1 bits (72), Expect = 0.030
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +1
Query: 307 IFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAAT 438
+ KGHT LCW+ + P L+T + D+ + W ++ ++
Sbjct: 177 VLKGHTAEGFGLCWNPNLPGNLATGAEDQVICLWDVQTQSFTSS 220
Score = 27.9 bits (59), Expect = 1.1
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +1
Query: 307 IFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRS 420
+ + H+ +++ + + LL+TAS DK+V W R+
Sbjct: 276 VIQAHSKAINAVAINPFNDYLLATASADKTVALWDLRN 313
>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
Git5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 305
Score = 33.1 bits (72), Expect = 0.030
Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Frame = +1
Query: 256 KSVAIFNLERSRLSQDFIFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAA 435
K+ +++E+++ + KGH + L + S P L T DK + W R+ A
Sbjct: 127 KTCMFWDIEQAKAIS--VLKGHEMDIVSLDFLPSNPNLFVTGGCDKLAKLWDLRAAYCCA 184
Query: 436 TIPTKGXNLN-IAWAP-NGQHHCGWGQGVXVPFSV 534
T P ++N I++ P N G G+ F +
Sbjct: 185 TFPGNTSDINSISFFPSNADFVTGAEDGIARCFDI 219
>SPBC215.15 |sec13||COPII-coated vesicle component
Sec13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 32.3 bits (70), Expect = 0.052
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +1
Query: 256 KSVAIFNLERSRLSQDFIFKGHTGSVDQLCW-HASXPXLLSTASGDKSVRXW 408
+++ +F++E ++ + +GH+G V QL W H +L++AS D V W
Sbjct: 31 QTIKVFSIENNQQTLLETLRGHSGPVWQLGWAHPKFGTILASASYDGHVIVW 82
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 31.9 bits (69), Expect = 0.069
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Frame = +1
Query: 310 FKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAATIPTK---GXNLNI-AW 474
F HT +V+ L W S + S+ S D + R W R+ + + + G ++N+ +W
Sbjct: 287 FLSHTAAVEDLQWSPSEKNVFSSCSCDGTFRIWDVRNKQKTSALTVNAHPGVDVNVLSW 345
>SPAC23H3.05c |swd1||COMPASS complex subunit
Swd1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 398
Score = 31.9 bits (69), Expect = 0.069
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +1
Query: 247 VIRKSVAIFNLERSRLSQDFIFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTR 417
++ SV I++L +S+ + GHT ++ +CW +S L TAS D W R
Sbjct: 43 LVNGSVVIWDLSTFSVSR--VLTGHTRAIQSVCW-SSCDRFLLTASRDWKCILWDLR 96
>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 314
Score = 31.5 bits (68), Expect = 0.091
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +1
Query: 262 VAIFNLERSRLSQDFIFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRS 420
V ++++ S F+GHT +V + +H L+T+S D +V+ W R+
Sbjct: 63 VRLYDINTSSQMPLMTFEGHTNNVTAIAFHCDGKW-LATSSEDGTVKVWDMRA 114
>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 30.7 bits (66), Expect = 0.16
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 307 IFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXW 408
+ +GH V+ + WH P LL+T D SV +
Sbjct: 287 VLRGHEKDVNCVTWHPLYPNLLTTGGSDGSVNHY 320
>SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 340
Score = 30.3 bits (65), Expect = 0.21
Identities = 19/58 (32%), Positives = 27/58 (46%)
Frame = +1
Query: 313 KGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAATIPTKGXNLNIAWAPNG 486
KGH G V+ L LL++ S D +++ W +RS TI K +A A G
Sbjct: 132 KGHAGVVNALDVLKVGSELLTSVSDDCTMKVWDSRSKDCIKTIEEKYPLTAVAIAQQG 189
>SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 352
Score = 30.3 bits (65), Expect = 0.21
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +2
Query: 188 HSSKVHSVGWSCDGRKLASGSFVKA 262
H V SV WS DG K+ASGS K+
Sbjct: 73 HQGPVLSVNWSRDGTKVASGSVDKS 97
Score = 29.5 bits (63), Expect = 0.37
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 9/76 (11%)
Frame = +1
Query: 265 AIFNLERSRLSQDFIFKGHTG---------SVDQLCWHASXPXLLSTASGDKSVRXWXTR 417
AI N++ SQ+F F+ H SV+ + +H STA D + W
Sbjct: 226 AIQNIDEKNASQNFSFRCHRNQAGNSADVYSVNSIAFHPQY-GTFSTAGSDGTFSFWDKD 284
Query: 418 SHKXAATIPTKGXNLN 465
SH+ + P G ++
Sbjct: 285 SHQRLKSYPNVGGTIS 300
>SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 30.3 bits (65), Expect = 0.21
Identities = 14/62 (22%), Positives = 29/62 (46%)
Frame = +1
Query: 310 FKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAATIPTKGXNLNIAWAPNGQ 489
F H+ V L W++ P +L + S DK+ + R + ++ N+AW + +
Sbjct: 293 FTYHSDKVSCLDWYSKAPSVLLSGSYDKTAKIADLRLEEAPSSFQVTSDVENVAWDQHSE 352
Query: 490 HH 495
++
Sbjct: 353 NN 354
Score = 27.1 bits (57), Expect = 2.0
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 313 KGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXT 414
+ H G + L + S P ++T S D+ V+ W T
Sbjct: 380 QAHDGPISCLSVNPSVPSFVATGSTDRVVKLWNT 413
>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 556
Score = 29.9 bits (64), Expect = 0.28
Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Frame = +1
Query: 304 FIFKGHTGSVDQLCWHASXPXLLSTASG--DKSVRXWXTRSHKXAATIPTKGXNLNIAWA 477
+ F H +V + W +L++ G D++++ W T+ I T N+ W+
Sbjct: 410 YSFHNHIAAVKAITWSPHQRGILASGGGTADRTIKLWNTQRGSMLHNIDTGSQVCNLLWS 469
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 29.9 bits (64), Expect = 0.28
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +1
Query: 316 GHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAATIPTKGXNLN-IAWAPN 483
GH G++ + S L T SGD + R W + AT+ ++ +AWAP+
Sbjct: 132 GHDGTIISAQFSPSTSSRLVTGSGDFTARLWDCDTQTPIATMKGHTNWVSCVAWAPD 188
Score = 29.9 bits (64), Expect = 0.28
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +2
Query: 188 HSSKVHSVGWSCDGRKLASGSFVKALQ 268
H +V +V WS DG+++ASG KA++
Sbjct: 472 HEDQVFAVDWSPDGQRVASGGADKAVR 498
Score = 25.8 bits (54), Expect = 4.5
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 370 LSTASGDKSVRXWXTRSHKXAATI 441
++TAS D SVR W ++ K AT+
Sbjct: 404 IATASFDSSVRLWDGKTGKFLATL 427
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 28.7 bits (61), Expect = 0.64
Identities = 15/62 (24%), Positives = 29/62 (46%)
Frame = +1
Query: 304 FIFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAATIPTKGXNLNIAWAPN 483
++F GH + L + + ++S SGD++ R W + + + + IA +PN
Sbjct: 396 YVFSGHEQDIYSLDFSHNGRFIVS-GSGDRTARLWDVETGQCILKLEIENGVTAIAISPN 454
Query: 484 GQ 489
Q
Sbjct: 455 DQ 456
Score = 25.4 bits (53), Expect = 6.0
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 188 HSSKVHSVGWSCDGRKLASGS 250
H + V SV +S DGR+ ASGS
Sbjct: 579 HKNSVISVCFSPDGRQFASGS 599
>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 314
Score = 28.7 bits (61), Expect = 0.64
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +2
Query: 170 TREYIAHSSKVHSVGWSCDGRKLASGSFVKALQ 268
T +++ H+S V SV S D R++ SGS K ++
Sbjct: 98 THQFVGHTSDVLSVSISPDNRQVVSGSRDKTIK 130
Score = 27.1 bits (57), Expect = 2.0
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 313 KGHTGSVDQLCWHASXPXLLSTASGDKSVRXW 408
+GH+G V L P +L + S DKS+ W
Sbjct: 12 EGHSGWVTSLSTAPENPDILLSGSRDKSIILW 43
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 28.7 bits (61), Expect = 0.64
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +2
Query: 98 DSKHSQAPIEDLSELRSY-FASHNTTREYIAHSSKVHSVGWSCDGRKLASGS 250
D K+ +ED ++R + A R H +++S+ +S DG+ L SGS
Sbjct: 345 DGKYLATGVED-QQIRIWDIAQKRVYRLLTGHEQEIYSLDFSKDGKTLVSGS 395
Score = 27.9 bits (59), Expect = 1.1
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 140 LRSYFASHNTTREYIAHSSKVHSVGWSCDGRKLASGS 250
+R + +S + H V+SV +S DG+ L SGS
Sbjct: 441 IRIWTSSGTLVEQLHGHEESVYSVAFSPDGKYLVSGS 477
Score = 26.6 bits (56), Expect = 2.6
Identities = 16/78 (20%), Positives = 37/78 (47%)
Frame = +1
Query: 256 KSVAIFNLERSRLSQDFIFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAA 435
+ + I+++ + R+ + + GH + L + L+S SGD++V W + +
Sbjct: 356 QQIRIWDIAQKRVYR--LLTGHEQEIYSLDFSKDGKTLVS-GSGDRTVCLWDVEAGEQKL 412
Query: 436 TIPTKGXNLNIAWAPNGQ 489
+ T + ++P+GQ
Sbjct: 413 ILHTDDGVTTVMFSPDGQ 430
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 28.7 bits (61), Expect = 0.64
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +1
Query: 307 IFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXW 408
+ +GH SV+ + ++S L+ TAS D+++R W
Sbjct: 342 VLRGHLASVNSV-QYSSKTGLIVTASSDRTLRTW 374
>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 28.3 bits (60), Expect = 0.85
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 316 GHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTR 417
GHTG+V + W +L++ S D + R W R
Sbjct: 187 GHTGNVLAVDWCPKNEFVLASGSADGTCRLWDIR 220
Score = 27.9 bits (59), Expect = 1.1
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Frame = +1
Query: 244 WVIRK---SVAIFNLERSRLSQDFIFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXT 414
W IRK S A +L L + H G+V+ L W + L S + D+ +R W
Sbjct: 217 WDIRKVSSSFACMDLHNKYLPSNQTNISHYGTVNGLAWTSDARYLASCGTDDR-IRVWNM 275
Query: 415 RS 420
S
Sbjct: 276 ES 277
Score = 27.1 bits (57), Expect = 2.0
Identities = 12/58 (20%), Positives = 25/58 (43%)
Frame = +1
Query: 319 HTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAATIPTKGXNLNIAWAPNGQH 492
H + L W + +++S D +++ W + + A T + + AW+P H
Sbjct: 102 HKFGITDLHWFPFDNGIFTSSSFDHTLKVWDVSTLQEAYTFTMEDMIYSHAWSPIASH 159
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 28.3 bits (60), Expect = 0.85
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +1
Query: 280 ERSRL-SQDFIFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXW 408
ER +L Q +F+GHT +V W+ +L++ D + W
Sbjct: 66 ERGKLPDQVNLFRGHTAAVLDTDWNPFHDQVLASGGDDSKIMIW 109
Score = 27.5 bits (58), Expect = 1.5
Identities = 9/32 (28%), Positives = 20/32 (62%)
Frame = +1
Query: 313 KGHTGSVDQLCWHASXPXLLSTASGDKSVRXW 408
KGH+ V + +H + +L+++S D +++ W
Sbjct: 131 KGHSRKVGLVQYHPTAANVLASSSADNTIKLW 162
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 28.3 bits (60), Expect = 0.85
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 316 GHTGSVDQLCWHASXPXLLSTASGDKSVRXW 408
GH + Q+ W A+ L++AS DK++R W
Sbjct: 94 GHYRGISQVKW-ATGSKYLASASDDKTIRIW 123
>SPCC584.14 |mug160||conserved eukaryotic
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 431
Score = 28.3 bits (60), Expect = 0.85
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -3
Query: 261 AFTNDPEASFLPSQDQPTECTLDECAMYSRVVLCDAK 151
AF D E FLP P +CT E A++S + + D +
Sbjct: 86 AFLMDNEDFFLPVPMNPAQCTALEIALWSLIRVDDQR 122
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 27.9 bits (59), Expect = 1.1
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Frame = +1
Query: 319 HTGSVDQLCWHASXPXLLSTASG-DKSVRXWXTRSHKXAATIPTKGXN-LN-IAWAPNGQ 489
H G V LC + S + + G DK++R W + S+K + I + LN + W P Q
Sbjct: 220 HNGVV--LCVNYSPNGVFLASCGRDKTIRIWDSTSNKKKSLITINNVSPLNCVRWRPANQ 277
Query: 490 HHCGWGQ 510
G Q
Sbjct: 278 QSRGSNQ 284
>SPBC609.03 |||WD repeat protein, human IQWD1
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 27.5 bits (58), Expect = 1.5
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 173 REYIAHSSKVHSVGWSCDGRKLASGS 250
+E H+ V+++ WS DG L SGS
Sbjct: 39 KELTGHTGCVNTLDWSADGEFLLSGS 64
Score = 26.6 bits (56), Expect = 2.6
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +1
Query: 316 GHTGSVDQLCWHASXPXLLSTASGDKSVRXW 408
GHTG V+ L W A LLS S D + W
Sbjct: 43 GHTGCVNTLDWSADGEFLLS-GSDDTRLIVW 72
>SPCC126.01c ||SPCC576.18c|conserved fungal
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 369
Score = 27.5 bits (58), Expect = 1.5
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +1
Query: 310 FKGHTGSVDQLCWHASXPXLLSTASGDKSVRXW 408
F GH +V L + L TAS DK+VR W
Sbjct: 218 FWGHQSNVYCLLFDPQDSEALWTASADKTVREW 250
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 27.1 bits (57), Expect = 2.0
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Frame = +1
Query: 322 TGSVDQLCWHASXPXLLSTASGDKS---VRXWXTRSHKXAATIPT--KGXNLNIAWAP 480
TG+V+ + WH + L+TA D + W R I T + L+++W P
Sbjct: 213 TGAVNSIAWHPNNATRLATAIDDNRNPIILTWDLRQPTVPQNILTGHQKAALSLSWCP 270
Score = 26.2 bits (55), Expect = 3.4
Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 1/78 (1%)
Frame = +1
Query: 262 VAIFNLERSRLSQDFIFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAATI 441
+ ++L + + Q+ I GH + L W P L ++ D W + + +
Sbjct: 241 ILTWDLRQPTVPQN-ILTGHQKAALSLSWCPEDPTFLLSSGKDGRAMVWNVETGESLGSF 299
Query: 442 PTKG-XNLNIAWAPNGQH 492
P G +W P+ +
Sbjct: 300 PRSGNWYTKSSWCPSNSN 317
>SPAC343.17c |||WD repeat protein, human WDR70
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 576
Score = 27.1 bits (57), Expect = 2.0
Identities = 10/38 (26%), Positives = 13/38 (34%)
Frame = +1
Query: 313 KGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHK 426
KGH + CW + T D + R W K
Sbjct: 194 KGHIAEITDGCWQPDSSQIFLTTGYDSTARIWDVNRTK 231
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 27.1 bits (57), Expect = 2.0
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 188 HSSKVHSVGWSCDGRKLASG 247
HSS+V + W DG +LASG
Sbjct: 303 HSSEVCGLAWRSDGLQLASG 322
>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
Prw1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 431
Score = 26.6 bits (56), Expect = 2.6
Identities = 9/34 (26%), Positives = 19/34 (55%)
Frame = +1
Query: 319 HTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRS 420
H+G + + ++ +L+T S DK++ W R+
Sbjct: 280 HSGPIHSVAFNPHNDFILATCSTDKTIALWDLRN 313
>SPAC806.02c |||Par A family ATPase iron cluster assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 608
Score = 26.2 bits (55), Expect = 3.4
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 188 HSSKVHSVGWSCDGRKLASGSFVKAL 265
H ++V + WSC+G LA+ S K++
Sbjct: 377 HENEVKCIAWSCNGNYLATCSRDKSV 402
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2244
Score = 26.2 bits (55), Expect = 3.4
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +2
Query: 71 FYMITKAMKDSKHSQAPIEDLSELRSYF--ASHNTTREYIAHSSKV 202
FY + MKD K +ED S L+ Y A H+ + E + + V
Sbjct: 46 FYSVNGEMKDYKLMALELEDKSVLQGYSFGADHSVSGELVFQTGMV 91
>SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate synthase
Arg5 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 415
Score = 26.2 bits (55), Expect = 3.4
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -2
Query: 565 VPPVTTYKVLVPKMEPKLP-VPTRNGVA 485
VPPVT ++ ++PK +P P P +N +A
Sbjct: 20 VPPVTNHERILPK-QPSFPTAPAQNEIA 46
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 26.2 bits (55), Expect = 3.4
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +1
Query: 319 HTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAATIP 444
H + + W + L+T+S D +V+ W R A TIP
Sbjct: 348 HIRQIVAMAWSPNG-YQLATSSADDTVKIWDLRKVSLAHTIP 388
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 25.8 bits (54), Expect = 4.5
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +1
Query: 262 VAIFNLERSRLSQDFIFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXW 408
V ++ + S+ + +GH +V +H +LS AS DK++R W
Sbjct: 236 VKLWRMTASKAWEVDTCRGHFNNVSCCLFHPHQELILS-ASEDKTIRVW 283
>SPAC31A2.14 |||WD repeat protein, human WRDR48
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 25.4 bits (53), Expect = 6.0
Identities = 14/59 (23%), Positives = 29/59 (49%)
Frame = +1
Query: 250 IRKSVAIFNLERSRLSQDFIFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHK 426
++K + +++ + D + GHT +V + +L TAS D +++ W R+ K
Sbjct: 194 LQKDIQLWDCVSKKRITDLV--GHTDNVRDILISDDGRTIL-TASSDATIKLWSLRAQK 249
>SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 398
Score = 25.4 bits (53), Expect = 6.0
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +2
Query: 98 DSKHSQAPIEDLSELRSYFASHNTTREYIAHSSKVHSVGWSCDGRKL 238
DS + PI+D L + + H+ T+ HS + V S D K+
Sbjct: 187 DSTFAPPPIQDALVLGADYVVHSATKYLAGHSDVLAGVTASKDRSKI 233
>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 651
Score = 25.0 bits (52), Expect = 7.9
Identities = 15/58 (25%), Positives = 29/58 (50%)
Frame = +2
Query: 95 KDSKHSQAPIEDLSELRSYFASHNTTREYIAHSSKVHSVGWSCDGRKLASGSFVKALQ 268
++S S+AP S + + N +++ AHS + S+ +S LA+ S K ++
Sbjct: 300 QNSAFSKAPENTESSVNQNYIVGNLVKQFQAHSEYITSLDFSHPFGTLATASTDKTVK 357
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 25.0 bits (52), Expect = 7.9
Identities = 9/36 (25%), Positives = 18/36 (50%)
Frame = +1
Query: 316 GHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSH 423
GH V+ + ++ P ++A D +VR W + +
Sbjct: 468 GHVKCVNYVAYNPVDPYQFASAGDDNTVRIWSNKDN 503
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,161,747
Number of Sequences: 5004
Number of extensions: 39878
Number of successful extensions: 194
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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