SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060087.seq
         (575 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces p...    43   3e-05
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    42   9e-05
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    37   0.002
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po...    35   0.007
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13...    35   0.010
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc...    33   0.030
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git...    33   0.030
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa...    32   0.052
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe...    32   0.069
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom...    32   0.069
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy...    31   0.091
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ...    31   0.16 
SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc...    30   0.21 
SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces p...    30   0.21 
SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces pombe...    30   0.21 
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po...    30   0.28 
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c...    30   0.28 
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac...    29   0.64 
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ...    29   0.64 
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac...    29   0.64 
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos...    29   0.64 
SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||...    28   0.85 
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    28   0.85 
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom...    28   0.85 
SPCC584.14 |mug160||conserved eukaryotic protein|Schizosaccharom...    28   0.85 
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    28   1.1  
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha...    27   1.5  
SPCC126.01c ||SPCC576.18c|conserved fungal protein|Schizosacchar...    27   1.5  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    27   2.0  
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch...    27   2.0  
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    27   2.0  
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1...    27   2.6  
SPAC806.02c |||Par A family ATPase iron cluster assembly protein...    26   3.4  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    26   3.4  
SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate syntha...    26   3.4  
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S...    26   3.4  
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    26   4.5  
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc...    25   6.0  
SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyce...    25   6.0  
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo...    25   7.9  
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    25   7.9  

>SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 309

 Score = 43.2 bits (97), Expect = 3e-05
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
 Frame = +1

Query: 259 SVAIFNLERS--RLSQDFIFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXA 432
           SV ++N +R   + + +   +G+ G V+QL W  +    L      K +R W  RS K  
Sbjct: 47  SVLVWNSDRLDFKFTTELGNRGY-GLVEQLVWDPTHSDRLMAVYAGKMIRFWDFRSAKPI 105

Query: 433 ATIPTKGXNLNIAWAPNGQHHC 498
           A I +   N+   W+P+G + C
Sbjct: 106 AEIESNYENIYATWSPSGNYCC 127



 Score = 26.2 bits (55), Expect = 3.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 170 TREYIAHSSKVHSVGWSCDGRKLASGS 250
           TR+       + S+GW+  G +LAS S
Sbjct: 17  TRDLQGQQGPIRSLGWNLSGSRLASSS 43


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 41.5 bits (93), Expect = 9e-05
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = +1

Query: 301 DFIFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRS 420
           +F+  GHT +V  + WH   P +L+T S D SV  W  RS
Sbjct: 315 EFMLHGHTRAVTDMNWHRQNPDVLATCSIDSSVHCWDLRS 354


>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 36.7 bits (81), Expect = 0.002
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = +1

Query: 316 GHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHK-XAATIPTKGXNLNIAWAPNGQH 492
           GH G V  L +++S   LL++ S DK+VR W   S       +P     L++A+ P+G+ 
Sbjct: 465 GHEGPVSSLSFNSSGS-LLASGSWDKTVRIWDIFSRSGIVEPLPIPSDVLSLAFHPDGKE 523

Query: 493 HC 498
            C
Sbjct: 524 VC 525



 Score = 27.5 bits (58), Expect = 1.5
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +2

Query: 152 FASHNTTREYIAHSSKVHSVGWSCDGRKLASGS 250
           FA     REY  H   + S+ WS D R   S S
Sbjct: 133 FAPFVLHREYTGHFDDIVSISWSADSRFFISTS 165


>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 35.1 bits (77), Expect = 0.007
 Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
 Frame = +1

Query: 301 DFIFK--GHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAATIPTKGXNLNIAW 474
           +F+++  GHT  V  L +      L+++   D+++R W  +      T+PT     +++ 
Sbjct: 206 EFLYELHGHTSFVYSLTY-IHNQQLIASCGEDRTIRIWKGKECLQCITLPTTSV-WSVSS 263

Query: 475 APNGQHHCGWGQGVXVPFSVPKL 543
            PNG   CG   G    F+V K+
Sbjct: 264 LPNGDLVCGSSDGFVRIFTVDKV 286


>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 777

 Score = 34.7 bits (76), Expect = 0.010
 Identities = 24/76 (31%), Positives = 36/76 (47%)
 Frame = +1

Query: 262 VAIFNLERSRLSQDFIFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAATI 441
           V +++L  SR     +F+GH+  +  L +  +   LLS  S DK+V+ W  +      TI
Sbjct: 171 VRLWDLNSSRSMA--VFEGHSSVIRGLTFEPTGSFLLS-GSRDKTVQVWNIKKRSAVRTI 227

Query: 442 PTKGXNLNIAWAPNGQ 489
           P       I W  NGQ
Sbjct: 228 PVFHSVEAIGWV-NGQ 242


>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 430

 Score = 33.1 bits (72), Expect = 0.030
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +1

Query: 307 IFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAAT 438
           + KGHT     LCW+ + P  L+T + D+ +  W  ++    ++
Sbjct: 177 VLKGHTAEGFGLCWNPNLPGNLATGAEDQVICLWDVQTQSFTSS 220



 Score = 27.9 bits (59), Expect = 1.1
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +1

Query: 307 IFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRS 420
           + + H+ +++ +  +     LL+TAS DK+V  W  R+
Sbjct: 276 VIQAHSKAINAVAINPFNDYLLATASADKTVALWDLRN 313


>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
           Git5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 305

 Score = 33.1 bits (72), Expect = 0.030
 Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
 Frame = +1

Query: 256 KSVAIFNLERSRLSQDFIFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAA 435
           K+   +++E+++     + KGH   +  L +  S P L  T   DK  + W  R+    A
Sbjct: 127 KTCMFWDIEQAKAIS--VLKGHEMDIVSLDFLPSNPNLFVTGGCDKLAKLWDLRAAYCCA 184

Query: 436 TIPTKGXNLN-IAWAP-NGQHHCGWGQGVXVPFSV 534
           T P    ++N I++ P N     G   G+   F +
Sbjct: 185 TFPGNTSDINSISFFPSNADFVTGAEDGIARCFDI 219


>SPBC215.15 |sec13||COPII-coated vesicle component
           Sec13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 32.3 bits (70), Expect = 0.052
 Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = +1

Query: 256 KSVAIFNLERSRLSQDFIFKGHTGSVDQLCW-HASXPXLLSTASGDKSVRXW 408
           +++ +F++E ++ +     +GH+G V QL W H     +L++AS D  V  W
Sbjct: 31  QTIKVFSIENNQQTLLETLRGHSGPVWQLGWAHPKFGTILASASYDGHVIVW 82


>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 31.9 bits (69), Expect = 0.069
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
 Frame = +1

Query: 310 FKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAATIPTK---GXNLNI-AW 474
           F  HT +V+ L W  S   + S+ S D + R W  R+ +  + +      G ++N+ +W
Sbjct: 287 FLSHTAAVEDLQWSPSEKNVFSSCSCDGTFRIWDVRNKQKTSALTVNAHPGVDVNVLSW 345


>SPAC23H3.05c |swd1||COMPASS complex subunit
           Swd1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 31.9 bits (69), Expect = 0.069
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = +1

Query: 247 VIRKSVAIFNLERSRLSQDFIFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTR 417
           ++  SV I++L    +S+  +  GHT ++  +CW +S    L TAS D     W  R
Sbjct: 43  LVNGSVVIWDLSTFSVSR--VLTGHTRAIQSVCW-SSCDRFLLTASRDWKCILWDLR 96


>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 314

 Score = 31.5 bits (68), Expect = 0.091
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = +1

Query: 262 VAIFNLERSRLSQDFIFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRS 420
           V ++++  S       F+GHT +V  + +H      L+T+S D +V+ W  R+
Sbjct: 63  VRLYDINTSSQMPLMTFEGHTNNVTAIAFHCDGKW-LATSSEDGTVKVWDMRA 114


>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 509

 Score = 30.7 bits (66), Expect = 0.16
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 307 IFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXW 408
           + +GH   V+ + WH   P LL+T   D SV  +
Sbjct: 287 VLRGHEKDVNCVTWHPLYPNLLTTGGSDGSVNHY 320


>SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 340

 Score = 30.3 bits (65), Expect = 0.21
 Identities = 19/58 (32%), Positives = 27/58 (46%)
 Frame = +1

Query: 313 KGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAATIPTKGXNLNIAWAPNG 486
           KGH G V+ L        LL++ S D +++ W +RS     TI  K     +A A  G
Sbjct: 132 KGHAGVVNALDVLKVGSELLTSVSDDCTMKVWDSRSKDCIKTIEEKYPLTAVAIAQQG 189


>SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 352

 Score = 30.3 bits (65), Expect = 0.21
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +2

Query: 188 HSSKVHSVGWSCDGRKLASGSFVKA 262
           H   V SV WS DG K+ASGS  K+
Sbjct: 73  HQGPVLSVNWSRDGTKVASGSVDKS 97



 Score = 29.5 bits (63), Expect = 0.37
 Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 9/76 (11%)
 Frame = +1

Query: 265 AIFNLERSRLSQDFIFKGHTG---------SVDQLCWHASXPXLLSTASGDKSVRXWXTR 417
           AI N++    SQ+F F+ H           SV+ + +H       STA  D +   W   
Sbjct: 226 AIQNIDEKNASQNFSFRCHRNQAGNSADVYSVNSIAFHPQY-GTFSTAGSDGTFSFWDKD 284

Query: 418 SHKXAATIPTKGXNLN 465
           SH+   + P  G  ++
Sbjct: 285 SHQRLKSYPNVGGTIS 300


>SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 30.3 bits (65), Expect = 0.21
 Identities = 14/62 (22%), Positives = 29/62 (46%)
 Frame = +1

Query: 310 FKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAATIPTKGXNLNIAWAPNGQ 489
           F  H+  V  L W++  P +L + S DK+ +    R  +  ++        N+AW  + +
Sbjct: 293 FTYHSDKVSCLDWYSKAPSVLLSGSYDKTAKIADLRLEEAPSSFQVTSDVENVAWDQHSE 352

Query: 490 HH 495
           ++
Sbjct: 353 NN 354



 Score = 27.1 bits (57), Expect = 2.0
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 313 KGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXT 414
           + H G +  L  + S P  ++T S D+ V+ W T
Sbjct: 380 QAHDGPISCLSVNPSVPSFVATGSTDRVVKLWNT 413


>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 556

 Score = 29.9 bits (64), Expect = 0.28
 Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
 Frame = +1

Query: 304 FIFKGHTGSVDQLCWHASXPXLLSTASG--DKSVRXWXTRSHKXAATIPTKGXNLNIAWA 477
           + F  H  +V  + W      +L++  G  D++++ W T+       I T     N+ W+
Sbjct: 410 YSFHNHIAAVKAITWSPHQRGILASGGGTADRTIKLWNTQRGSMLHNIDTGSQVCNLLWS 469


>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 502

 Score = 29.9 bits (64), Expect = 0.28
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +1

Query: 316 GHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAATIPTKGXNLN-IAWAPN 483
           GH G++    +  S    L T SGD + R W   +    AT+      ++ +AWAP+
Sbjct: 132 GHDGTIISAQFSPSTSSRLVTGSGDFTARLWDCDTQTPIATMKGHTNWVSCVAWAPD 188



 Score = 29.9 bits (64), Expect = 0.28
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +2

Query: 188 HSSKVHSVGWSCDGRKLASGSFVKALQ 268
           H  +V +V WS DG+++ASG   KA++
Sbjct: 472 HEDQVFAVDWSPDGQRVASGGADKAVR 498



 Score = 25.8 bits (54), Expect = 4.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 370 LSTASGDKSVRXWXTRSHKXAATI 441
           ++TAS D SVR W  ++ K  AT+
Sbjct: 404 IATASFDSSVRLWDGKTGKFLATL 427


>SPAC18B11.10 |tup11||transcriptional corepressor
           Tup11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 28.7 bits (61), Expect = 0.64
 Identities = 15/62 (24%), Positives = 29/62 (46%)
 Frame = +1

Query: 304 FIFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAATIPTKGXNLNIAWAPN 483
           ++F GH   +  L +  +   ++S  SGD++ R W   + +    +  +     IA +PN
Sbjct: 396 YVFSGHEQDIYSLDFSHNGRFIVS-GSGDRTARLWDVETGQCILKLEIENGVTAIAISPN 454

Query: 484 GQ 489
            Q
Sbjct: 455 DQ 456



 Score = 25.4 bits (53), Expect = 6.0
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +2

Query: 188 HSSKVHSVGWSCDGRKLASGS 250
           H + V SV +S DGR+ ASGS
Sbjct: 579 HKNSVISVCFSPDGRQFASGS 599


>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 314

 Score = 28.7 bits (61), Expect = 0.64
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +2

Query: 170 TREYIAHSSKVHSVGWSCDGRKLASGSFVKALQ 268
           T +++ H+S V SV  S D R++ SGS  K ++
Sbjct: 98  THQFVGHTSDVLSVSISPDNRQVVSGSRDKTIK 130



 Score = 27.1 bits (57), Expect = 2.0
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 313 KGHTGSVDQLCWHASXPXLLSTASGDKSVRXW 408
           +GH+G V  L      P +L + S DKS+  W
Sbjct: 12  EGHSGWVTSLSTAPENPDILLSGSRDKSIILW 43


>SPAC630.14c |tup12||transcriptional corepressor Tup12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 586

 Score = 28.7 bits (61), Expect = 0.64
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +2

Query: 98  DSKHSQAPIEDLSELRSY-FASHNTTREYIAHSSKVHSVGWSCDGRKLASGS 250
           D K+    +ED  ++R +  A     R    H  +++S+ +S DG+ L SGS
Sbjct: 345 DGKYLATGVED-QQIRIWDIAQKRVYRLLTGHEQEIYSLDFSKDGKTLVSGS 395



 Score = 27.9 bits (59), Expect = 1.1
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 140 LRSYFASHNTTREYIAHSSKVHSVGWSCDGRKLASGS 250
           +R + +S     +   H   V+SV +S DG+ L SGS
Sbjct: 441 IRIWTSSGTLVEQLHGHEESVYSVAFSPDGKYLVSGS 477



 Score = 26.6 bits (56), Expect = 2.6
 Identities = 16/78 (20%), Positives = 37/78 (47%)
 Frame = +1

Query: 256 KSVAIFNLERSRLSQDFIFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAA 435
           + + I+++ + R+ +  +  GH   +  L +      L+S  SGD++V  W   + +   
Sbjct: 356 QQIRIWDIAQKRVYR--LLTGHEQEIYSLDFSKDGKTLVS-GSGDRTVCLWDVEAGEQKL 412

Query: 436 TIPTKGXNLNIAWAPNGQ 489
            + T      + ++P+GQ
Sbjct: 413 ILHTDDGVTTVMFSPDGQ 430


>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
           Pof11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 506

 Score = 28.7 bits (61), Expect = 0.64
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +1

Query: 307 IFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXW 408
           + +GH  SV+ +  ++S   L+ TAS D+++R W
Sbjct: 342 VLRGHLASVNSV-QYSSKTGLIVTASSDRTLRTW 374


>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 28.3 bits (60), Expect = 0.85
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 316 GHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTR 417
           GHTG+V  + W      +L++ S D + R W  R
Sbjct: 187 GHTGNVLAVDWCPKNEFVLASGSADGTCRLWDIR 220



 Score = 27.9 bits (59), Expect = 1.1
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
 Frame = +1

Query: 244 WVIRK---SVAIFNLERSRLSQDFIFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXT 414
           W IRK   S A  +L    L  +     H G+V+ L W +    L S  + D+ +R W  
Sbjct: 217 WDIRKVSSSFACMDLHNKYLPSNQTNISHYGTVNGLAWTSDARYLASCGTDDR-IRVWNM 275

Query: 415 RS 420
            S
Sbjct: 276 ES 277



 Score = 27.1 bits (57), Expect = 2.0
 Identities = 12/58 (20%), Positives = 25/58 (43%)
 Frame = +1

Query: 319 HTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAATIPTKGXNLNIAWAPNGQH 492
           H   +  L W      + +++S D +++ W   + + A T   +    + AW+P   H
Sbjct: 102 HKFGITDLHWFPFDNGIFTSSSFDHTLKVWDVSTLQEAYTFTMEDMIYSHAWSPIASH 159


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 28.3 bits (60), Expect = 0.85
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +1

Query: 280 ERSRL-SQDFIFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXW 408
           ER +L  Q  +F+GHT +V    W+     +L++   D  +  W
Sbjct: 66  ERGKLPDQVNLFRGHTAAVLDTDWNPFHDQVLASGGDDSKIMIW 109



 Score = 27.5 bits (58), Expect = 1.5
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +1

Query: 313 KGHTGSVDQLCWHASXPXLLSTASGDKSVRXW 408
           KGH+  V  + +H +   +L+++S D +++ W
Sbjct: 131 KGHSRKVGLVQYHPTAANVLASSSADNTIKLW 162


>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 28.3 bits (60), Expect = 0.85
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 316 GHTGSVDQLCWHASXPXLLSTASGDKSVRXW 408
           GH   + Q+ W A+    L++AS DK++R W
Sbjct: 94  GHYRGISQVKW-ATGSKYLASASDDKTIRIW 123


>SPCC584.14 |mug160||conserved eukaryotic
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 431

 Score = 28.3 bits (60), Expect = 0.85
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -3

Query: 261 AFTNDPEASFLPSQDQPTECTLDECAMYSRVVLCDAK 151
           AF  D E  FLP    P +CT  E A++S + + D +
Sbjct: 86  AFLMDNEDFFLPVPMNPAQCTALEIALWSLIRVDDQR 122


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
 Frame = +1

Query: 319 HTGSVDQLCWHASXPXLLSTASG-DKSVRXWXTRSHKXAATIPTKGXN-LN-IAWAPNGQ 489
           H G V  LC + S   +   + G DK++R W + S+K  + I     + LN + W P  Q
Sbjct: 220 HNGVV--LCVNYSPNGVFLASCGRDKTIRIWDSTSNKKKSLITINNVSPLNCVRWRPANQ 277

Query: 490 HHCGWGQ 510
              G  Q
Sbjct: 278 QSRGSNQ 284


>SPBC609.03 |||WD repeat protein, human IQWD1
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 173 REYIAHSSKVHSVGWSCDGRKLASGS 250
           +E   H+  V+++ WS DG  L SGS
Sbjct: 39  KELTGHTGCVNTLDWSADGEFLLSGS 64



 Score = 26.6 bits (56), Expect = 2.6
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +1

Query: 316 GHTGSVDQLCWHASXPXLLSTASGDKSVRXW 408
           GHTG V+ L W A    LLS  S D  +  W
Sbjct: 43  GHTGCVNTLDWSADGEFLLS-GSDDTRLIVW 72


>SPCC126.01c ||SPCC576.18c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 369

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +1

Query: 310 FKGHTGSVDQLCWHASXPXLLSTASGDKSVRXW 408
           F GH  +V  L +       L TAS DK+VR W
Sbjct: 218 FWGHQSNVYCLLFDPQDSEALWTASADKTVREW 250


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
 Frame = +1

Query: 322 TGSVDQLCWHASXPXLLSTASGDKS---VRXWXTRSHKXAATIPT--KGXNLNIAWAP 480
           TG+V+ + WH +    L+TA  D     +  W  R       I T  +   L+++W P
Sbjct: 213 TGAVNSIAWHPNNATRLATAIDDNRNPIILTWDLRQPTVPQNILTGHQKAALSLSWCP 270



 Score = 26.2 bits (55), Expect = 3.4
 Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 1/78 (1%)
 Frame = +1

Query: 262 VAIFNLERSRLSQDFIFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAATI 441
           +  ++L +  + Q+ I  GH  +   L W    P  L ++  D     W   + +   + 
Sbjct: 241 ILTWDLRQPTVPQN-ILTGHQKAALSLSWCPEDPTFLLSSGKDGRAMVWNVETGESLGSF 299

Query: 442 PTKG-XNLNIAWAPNGQH 492
           P  G      +W P+  +
Sbjct: 300 PRSGNWYTKSSWCPSNSN 317


>SPAC343.17c |||WD repeat protein, human WDR70
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 576

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 10/38 (26%), Positives = 13/38 (34%)
 Frame = +1

Query: 313 KGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHK 426
           KGH   +   CW      +  T   D + R W     K
Sbjct: 194 KGHIAEITDGCWQPDSSQIFLTTGYDSTARIWDVNRTK 231


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 188 HSSKVHSVGWSCDGRKLASG 247
           HSS+V  + W  DG +LASG
Sbjct: 303 HSSEVCGLAWRSDGLQLASG 322


>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
           Prw1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 431

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = +1

Query: 319 HTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRS 420
           H+G +  + ++     +L+T S DK++  W  R+
Sbjct: 280 HSGPIHSVAFNPHNDFILATCSTDKTIALWDLRN 313


>SPAC806.02c |||Par A family ATPase iron cluster assembly
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 608

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 188 HSSKVHSVGWSCDGRKLASGSFVKAL 265
           H ++V  + WSC+G  LA+ S  K++
Sbjct: 377 HENEVKCIAWSCNGNYLATCSRDKSV 402


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2244

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +2

Query: 71  FYMITKAMKDSKHSQAPIEDLSELRSYF--ASHNTTREYIAHSSKV 202
           FY +   MKD K     +ED S L+ Y   A H+ + E +  +  V
Sbjct: 46  FYSVNGEMKDYKLMALELEDKSVLQGYSFGADHSVSGELVFQTGMV 91


>SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate synthase
           Arg5 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 415

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -2

Query: 565 VPPVTTYKVLVPKMEPKLP-VPTRNGVA 485
           VPPVT ++ ++PK +P  P  P +N +A
Sbjct: 20  VPPVTNHERILPK-QPSFPTAPAQNEIA 46


>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 462

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +1

Query: 319 HTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAATIP 444
           H   +  + W  +    L+T+S D +V+ W  R    A TIP
Sbjct: 348 HIRQIVAMAWSPNG-YQLATSSADDTVKIWDLRKVSLAHTIP 388


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1207

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +1

Query: 262 VAIFNLERSRLSQDFIFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXW 408
           V ++ +  S+  +    +GH  +V    +H     +LS AS DK++R W
Sbjct: 236 VKLWRMTASKAWEVDTCRGHFNNVSCCLFHPHQELILS-ASEDKTIRVW 283


>SPAC31A2.14 |||WD repeat protein, human WRDR48
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 14/59 (23%), Positives = 29/59 (49%)
 Frame = +1

Query: 250 IRKSVAIFNLERSRLSQDFIFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHK 426
           ++K + +++    +   D +  GHT +V  +        +L TAS D +++ W  R+ K
Sbjct: 194 LQKDIQLWDCVSKKRITDLV--GHTDNVRDILISDDGRTIL-TASSDATIKLWSLRAQK 249


>SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 398

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +2

Query: 98  DSKHSQAPIEDLSELRSYFASHNTTREYIAHSSKVHSVGWSCDGRKL 238
           DS  +  PI+D   L + +  H+ T+    HS  +  V  S D  K+
Sbjct: 187 DSTFAPPPIQDALVLGADYVVHSATKYLAGHSDVLAGVTASKDRSKI 233


>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 651

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 15/58 (25%), Positives = 29/58 (50%)
 Frame = +2

Query: 95  KDSKHSQAPIEDLSELRSYFASHNTTREYIAHSSKVHSVGWSCDGRKLASGSFVKALQ 268
           ++S  S+AP    S +   +   N  +++ AHS  + S+ +S     LA+ S  K ++
Sbjct: 300 QNSAFSKAPENTESSVNQNYIVGNLVKQFQAHSEYITSLDFSHPFGTLATASTDKTVK 357


>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 9/36 (25%), Positives = 18/36 (50%)
 Frame = +1

Query: 316 GHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSH 423
           GH   V+ + ++   P   ++A  D +VR W  + +
Sbjct: 468 GHVKCVNYVAYNPVDPYQFASAGDDNTVRIWSNKDN 503


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,161,747
Number of Sequences: 5004
Number of extensions: 39878
Number of successful extensions: 194
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -