Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060087.seq
(575 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21573| Best HMM Match : WD40 (HMM E-Value=4.1e-32) 72 3e-13
SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30) 37 0.014
SB_6110| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.018
SB_51892| Best HMM Match : WD40 (HMM E-Value=8.7e-14) 36 0.031
SB_23694| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.072
SB_6741| Best HMM Match : WD40 (HMM E-Value=0) 34 0.096
SB_24139| Best HMM Match : WD40 (HMM E-Value=8.29989e-42) 34 0.096
SB_29024| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.17
SB_5612| Best HMM Match : WD40 (HMM E-Value=4.4e-18) 32 0.39
SB_3361| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.39
SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.51
SB_4488| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.51
SB_58364| Best HMM Match : WD40 (HMM E-Value=2.8026e-45) 31 0.67
SB_11169| Best HMM Match : WD40 (HMM E-Value=5.5001e-42) 30 1.2
SB_56034| Best HMM Match : GATA (HMM E-Value=5.6e-17) 30 1.6
SB_8639| Best HMM Match : WD40 (HMM E-Value=1.9e-22) 29 2.1
SB_4649| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_39216| Best HMM Match : WD40 (HMM E-Value=1.1e-14) 29 2.1
SB_19258| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_9384| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_49401| Best HMM Match : WD40 (HMM E-Value=1.6e-22) 29 2.7
SB_42279| Best HMM Match : WD40 (HMM E-Value=2.2e-10) 29 2.7
SB_39225| Best HMM Match : NIF (HMM E-Value=0) 29 2.7
SB_45687| Best HMM Match : WD40 (HMM E-Value=4.5e-16) 29 2.7
SB_8765| Best HMM Match : WD40 (HMM E-Value=3.9e-15) 29 3.6
SB_5618| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_44417| Best HMM Match : RdRP_2 (HMM E-Value=5.6) 29 3.6
SB_41443| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_6763| Best HMM Match : WD40 (HMM E-Value=4.6e-24) 28 6.3
SB_57418| Best HMM Match : WD40 (HMM E-Value=4.5e-15) 28 6.3
SB_51303| Best HMM Match : WD40 (HMM E-Value=3.5e-40) 28 6.3
SB_24742| Best HMM Match : E-MAP-115 (HMM E-Value=4.8) 28 6.3
SB_12443| Best HMM Match : WD40 (HMM E-Value=1e-24) 28 6.3
SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_21488| Best HMM Match : WD40 (HMM E-Value=3.5e-16) 27 8.3
>SB_21573| Best HMM Match : WD40 (HMM E-Value=4.1e-32)
Length = 458
Score = 72.1 bits (169), Expect = 3e-13
Identities = 29/54 (53%), Positives = 39/54 (72%)
Frame = +1
Query: 256 KSVAIFNLERSRLSQDFIFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTR 417
++ ++F L++ RL+ D I+KGH SVDQLCWH S P L TASGDK++R W R
Sbjct: 55 RTASVFVLDKDRLTLDHIYKGHNESVDQLCWHPSNPDLFVTASGDKTIRIWDAR 108
Score = 63.7 bits (148), Expect = 1e-10
Identities = 25/44 (56%), Positives = 36/44 (81%)
Frame = +2
Query: 122 IEDLSELRSYFASHNTTREYIAHSSKVHSVGWSCDGRKLASGSF 253
++ L+E+R +F + T+++ AH+SKVHSV WSCDGR+LASGSF
Sbjct: 10 LDYLNEMRKHFECNTKTKDFTAHNSKVHSVSWSCDGRRLASGSF 53
>SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30)
Length = 1093
Score = 36.7 bits (81), Expect = 0.014
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Frame = +1
Query: 313 KGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAATIPT--KGXNLNIAWAPNG 486
+ HT V++L W+ LL++ S D SVR W T + T G ++ W+P G
Sbjct: 201 QAHTSGVNRLDWNPVYTNLLASCSMDNSVRVWDTYLNGICVKSHTFHGGAVKDVKWSPGG 260
Query: 487 QH--HCGW 504
CG+
Sbjct: 261 MQLLSCGY 268
>SB_6110| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2051
Score = 36.3 bits (80), Expect = 0.018
Identities = 21/57 (36%), Positives = 33/57 (57%)
Frame = +1
Query: 253 RKSVAIFNLERSRLSQDFIFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSH 423
R+ + F+L++++L F GH+G+V LC S LS AS DK+V+ W +H
Sbjct: 1718 RERKSQFHLQQAKLQT---FTGHSGAVRSLCIQDSEHYFLS-ASKDKTVKLWSLSNH 1770
>SB_51892| Best HMM Match : WD40 (HMM E-Value=8.7e-14)
Length = 353
Score = 35.5 bits (78), Expect = 0.031
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +1
Query: 310 FKGHTGSVDQLCWHASXPXLLSTASGDKSVRXW 408
F GHTG + Q+ W+ P T S D SVR W
Sbjct: 111 FHGHTGPIYQVKWNPLYPEAFLTCSADWSVRLW 143
>SB_23694| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 172
Score = 34.3 bits (75), Expect = 0.072
Identities = 18/65 (27%), Positives = 32/65 (49%)
Frame = +1
Query: 295 SQDFIFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAATIPTKGXNLNIAW 474
++ +++GH+G V + + L +T S DKSV+ W + + T+ +I W
Sbjct: 24 TEALVYEGHSGMVRCVTVDPTGQWL-ATGSDDKSVKFWEVATGRCTKTVTLDRSIQSIDW 82
Query: 475 APNGQ 489
PN Q
Sbjct: 83 NPNPQ 87
>SB_6741| Best HMM Match : WD40 (HMM E-Value=0)
Length = 714
Score = 33.9 bits (74), Expect = 0.096
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +1
Query: 304 FIFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAATIPTKGXNLNI 468
++ HT V C+ A+ +L++ SGDK+ R W A P G N ++
Sbjct: 6 YVISRHTKDVTGCCFSANS-RVLASCSGDKTARLWDVEKGTELAQSPLDGHNYHV 59
>SB_24139| Best HMM Match : WD40 (HMM E-Value=8.29989e-42)
Length = 198
Score = 33.9 bits (74), Expect = 0.096
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +1
Query: 304 FIFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAATIPTKGXNLNI 468
++ HT V C+ A+ +L++ SGDK+ R W A P G N ++
Sbjct: 6 YVISRHTKDVTGCCFSANS-RVLASCSGDKTARLWDVEKGTELAQSPLDGHNYHV 59
>SB_29024| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 998
Score = 33.1 bits (72), Expect = 0.17
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = +1
Query: 316 GHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAATI 441
GHT +V+ + W+ P ++++AS D +VR W + + + +
Sbjct: 245 GHTRTVNCVTWNPLVPSMMASASDDGTVRIWGPSTEETSGNL 286
>SB_5612| Best HMM Match : WD40 (HMM E-Value=4.4e-18)
Length = 736
Score = 31.9 bits (69), Expect = 0.39
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +1
Query: 316 GHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAATIPTK-GXNLNIAWA 477
GH G V L W P L T+S D S + W +++ A G +++ W+
Sbjct: 20 GHCGRVTALSWSPHHPDRLVTSSYDGSAQVWDVETNQPIANYRGHVGRVMSVCWS 74
Score = 31.9 bits (69), Expect = 0.39
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 310 FKGHTGSVDQLCWHASXPXLLSTASGDKSVRXW 408
++GH G V +CW P ++ + D +VR W
Sbjct: 61 YRGHVGRVMSVCWSYLDPDVVFSGGEDGTVRPW 93
>SB_3361| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 247
Score = 31.9 bits (69), Expect = 0.39
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +1
Query: 286 SRLSQDFIFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHK 426
+R + +FK HT +V + + LL TAS DKS++ W K
Sbjct: 16 NRKGESTVFKAHTATVRSVDFSGDGQSLL-TASDDKSLKVWTVHRQK 61
>SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1480
Score = 31.5 bits (68), Expect = 0.51
Identities = 17/62 (27%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Frame = +1
Query: 310 FKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAA-TIPTKGXNLNIAWAPNG 486
F H G V L WH ++T DK V+ W + I T I W P
Sbjct: 417 FMAHNGPVFTLDWHPEDRNWIATGGRDKCVKVWDVQGKATPVNNIQTISSVSRIKWRPQK 476
Query: 487 QH 492
++
Sbjct: 477 KY 478
>SB_4488| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 645
Score = 31.5 bits (68), Expect = 0.51
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +1
Query: 310 FKGHTGSVDQLCWHASXPXLLSTASGDKSVRXW 408
F GHTG V LC H LL + S DK+++ W
Sbjct: 456 FVGHTGPVWALCVHGE---LLFSGSSDKTIKIW 485
>SB_58364| Best HMM Match : WD40 (HMM E-Value=2.8026e-45)
Length = 426
Score = 31.1 bits (67), Expect = 0.67
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +1
Query: 313 KGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAATIP 444
K H+G + L W +L TASGDKS + W K T P
Sbjct: 202 KAHSGGIYGLSWSDDSKFIL-TASGDKSCKIWNIED-KSLQTFP 243
>SB_11169| Best HMM Match : WD40 (HMM E-Value=5.5001e-42)
Length = 383
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +1
Query: 313 KGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAATIPTK--GXNLNIAWAPNG 486
+GH G+V+ + + + S S DKS+R W S K T+ G + +AP+G
Sbjct: 185 RGHQGAVNVVAFSLDNRYIFS-GSDDKSIRIWSRESSKCENTLTDSLGGEVRCLRFAPHG 243
Query: 487 Q 489
+
Sbjct: 244 E 244
>SB_56034| Best HMM Match : GATA (HMM E-Value=5.6e-17)
Length = 297
Score = 29.9 bits (64), Expect = 1.6
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +2
Query: 71 FYMITKAMKDSKHSQAPIEDLSELRSYFASHNTTREYIAHSSKVHSVGWSCDG-RKLASG 247
FYM + DSK + I +L +S+F + N T + S K +G S D R LAS
Sbjct: 3 FYMKKHSFFDSKRIPSSIAELERYKSFFTNLNET-SHSGISIKKAKIGQSPDSIRSLASC 61
Query: 248 S 250
S
Sbjct: 62 S 62
>SB_8639| Best HMM Match : WD40 (HMM E-Value=1.9e-22)
Length = 442
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 316 GHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSH 423
GH G+V L W+ +++T S D V W H
Sbjct: 13 GHKGAVLDLAWNPFDDHMIATGSEDARVMIWQIPEH 48
>SB_4649| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 475
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +1
Query: 319 HTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXA--ATIPTKGXNLNIAWAPNGQ 489
HT V+ L ++ +L+T S DK+V W R+ K + K + W+P+ +
Sbjct: 320 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNE 378
>SB_39216| Best HMM Match : WD40 (HMM E-Value=1.1e-14)
Length = 867
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +1
Query: 316 GHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAATIPTKGXNL-NIAWAPNGQ 489
GH + + +H + LL++A+ D +V+ W + K T+ + ++AW+ +G+
Sbjct: 108 GHYDKPNIVRYHPNAENLLTSAAYDLTVKLWDINAAKSVITLEGHNEQVFSLAWSADGK 166
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +2
Query: 188 HSSKVHSVGWSCDGRKLASGSFVKALQ 268
H+ +V S+ WS DG++LA+ S K L+
Sbjct: 152 HNEQVFSLAWSADGKQLATFSRDKKLR 178
>SB_19258| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 459
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 188 HSSKVHSVGWSCDGRKLASGSFVK 259
H V+++ +S DGR LASGSF K
Sbjct: 332 HHEPVYTISFSPDGRYLASGSFDK 355
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/39 (28%), Positives = 18/39 (46%)
Frame = +1
Query: 370 LSTASGDKSVRXWXTRSHKXAATIPTKGXNLNIAWAPNG 486
L++ S DK V W T++ + G + W+P G
Sbjct: 348 LASGSFDKRVHIWSTQTGNLVHSFQGSGGIFEVQWSPRG 386
>SB_9384| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 468
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 316 GHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSH 423
GH G+V L W+ +++T S D V W H
Sbjct: 77 GHKGAVLDLAWNPFDDHMIATGSEDARVMIWQIPEH 112
>SB_49401| Best HMM Match : WD40 (HMM E-Value=1.6e-22)
Length = 453
Score = 29.1 bits (62), Expect = 2.7
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Frame = +1
Query: 262 VAIFNLERSRLSQDFIFK-GHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAAT 438
V +++L + R S F+ + GH ++ + A +L+TAS D +V+ W + +
Sbjct: 350 VGLYDLGKRRWS--FLREMGHVETIFDCKFKADDADMLATASFDGTVKVWDVDTLSGVHS 407
Query: 439 IP-TKGXNLNIAWAP 480
P +G ++WAP
Sbjct: 408 SPGNEGIIYALSWAP 422
>SB_42279| Best HMM Match : WD40 (HMM E-Value=2.2e-10)
Length = 291
Score = 29.1 bits (62), Expect = 2.7
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Frame = +1
Query: 262 VAIFNLERSRLSQDFIFK-GHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAAT 438
V +++L + R S F+ + GH ++ + A +L+TAS D +V+ W + +
Sbjct: 188 VGLYDLGKRRWS--FLREMGHVETIFDCKFKADDADMLATASFDGTVKVWDVDTLSGVHS 245
Query: 439 IP-TKGXNLNIAWAP 480
P +G ++WAP
Sbjct: 246 SPGNEGIIYALSWAP 260
>SB_39225| Best HMM Match : NIF (HMM E-Value=0)
Length = 1772
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 307 IFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRS 420
+ +GHT SV+ C + TAS DK++R W S
Sbjct: 34 VMRGHTDSVNS-CRFCFDDAKIVTASHDKTIRLWDASS 70
>SB_45687| Best HMM Match : WD40 (HMM E-Value=4.5e-16)
Length = 301
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +1
Query: 310 FKGHTGSVDQL--CWHASXPXLLSTASGDKSVRXW 408
F HT V + C HA P L ++ + DK+VR W
Sbjct: 135 FTEHTDRVSSVRFCPHALHPGLCASGADDKTVRLW 169
>SB_8765| Best HMM Match : WD40 (HMM E-Value=3.9e-15)
Length = 481
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/60 (23%), Positives = 29/60 (48%)
Frame = +1
Query: 310 FKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAATIPTKGXNLNIAWAPNGQ 489
+K H G V ++ W+ +LS D + W + ++ P + +++WAP+G+
Sbjct: 47 WKAHEGIVLKIDWNPINNLILSGGE-DCKYKVWDSYGRVLYSSAPHEYPITSVSWAPDGE 105
>SB_5618| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 801
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/61 (26%), Positives = 28/61 (45%)
Frame = +1
Query: 310 FKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAATIPTKGXNLNIAWAPNGQ 489
F+GHT V+ + + A ++S AS D +++ W +S + T L+ N
Sbjct: 345 FRGHTSFVNDVIFTADAHHIIS-ASSDGTIKIWNIKSTECQHTFKPSVGGLSSEITVNSV 403
Query: 490 H 492
H
Sbjct: 404 H 404
>SB_44417| Best HMM Match : RdRP_2 (HMM E-Value=5.6)
Length = 541
Score = 28.7 bits (61), Expect = 3.6
Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Frame = -3
Query: 234 FLPSQDQPTECTLDECAMYSRVVLCDAK*LRNS--LKSSIGACECFESFIA 88
FLPS TEC L C Y V LR S L S EC +F++
Sbjct: 58 FLPSHTATTECALTFCHRYEEVCSYLLTPLRGSVPLPSHTSTRECVFTFLS 108
>SB_41443| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 482
Score = 28.7 bits (61), Expect = 3.6
Identities = 21/99 (21%), Positives = 41/99 (41%), Gaps = 7/99 (7%)
Frame = +1
Query: 274 NLERSRLSQDFIF--KGHTGSVDQLCWHASXPXLLSTASG--DKSVRXWXTRSHKXAATI 441
N+ S +S + +F H +V L W +L++ G D+ ++ W + +I
Sbjct: 321 NISASGISSNSLFCLSQHQAAVKALDWCPFQRNVLASGGGTADRQIKFWNASTGSCLNSI 380
Query: 442 PTKGXNLNIAWAPNGQH---HCGWGQGVXVPFSVPKLYK 549
TK +I W+ + G+ Q + + P + K
Sbjct: 381 DTKSQVCSILWSKEYKELISSHGYAQNQLIVWKYPSMTK 419
>SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1308
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Frame = +1
Query: 307 IFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXW----XTRSHKXAATIPTKG-XNLNIA 471
+ +GH+ + + W P LL + + D + W T ++ +PT + ++
Sbjct: 256 VLEGHSRGILSIAWCPQDPDLLMSCAKDNRILCWNPNEQTAGNEIVYELPTTAQWSFDVK 315
Query: 472 WAP 480
W P
Sbjct: 316 WCP 318
>SB_6763| Best HMM Match : WD40 (HMM E-Value=4.6e-24)
Length = 208
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +1
Query: 316 GHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAATI 441
GH ++Q+C+ L+++A+ DKSV+ W + K ++
Sbjct: 57 GHQALINQVCFSPDG-RLIASAAFDKSVKLWNGETGKFITSL 97
>SB_57418| Best HMM Match : WD40 (HMM E-Value=4.5e-15)
Length = 365
Score = 27.9 bits (59), Expect = 6.3
Identities = 9/34 (26%), Positives = 17/34 (50%)
Frame = +1
Query: 307 IFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXW 408
+FK TG + + WH + + + +S D + W
Sbjct: 270 LFKHSTGPITSVEWHPTDGSVFAASSADNQITLW 303
>SB_51303| Best HMM Match : WD40 (HMM E-Value=3.5e-40)
Length = 400
Score = 27.9 bits (59), Expect = 6.3
Identities = 10/45 (22%), Positives = 23/45 (51%)
Frame = +1
Query: 319 HTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAATIPTKG 453
H S++ + W+ + T+S D++++ W T + + T +G
Sbjct: 98 HRSSIETVQWYPHDSGMFLTSSVDRTLKVWDTNALQVVETFNFEG 142
>SB_24742| Best HMM Match : E-MAP-115 (HMM E-Value=4.8)
Length = 215
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/64 (23%), Positives = 29/64 (45%)
Frame = +2
Query: 2 GTRNSRQINKKH*QENN*SFNVKFYMITKAMKDSKHSQAPIEDLSELRSYFASHNTTREY 181
GT+ ++ +K + N + K A + + +AP+ D+ EL+ A+ EY
Sbjct: 85 GTKKNKDTKQKESRTRNAESSRKSDTYRGANESRRDYRAPVADIDELKQSIANVQEQEEY 144
Query: 182 IAHS 193
+ S
Sbjct: 145 VLSS 148
>SB_12443| Best HMM Match : WD40 (HMM E-Value=1e-24)
Length = 515
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +1
Query: 316 GHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAA 435
GH V+ + ++ P +L +AS D ++R W +R A
Sbjct: 475 GHQNVVNCVAFNPRDPDMLVSASDDHTLRVWKSRRRSGKA 514
>SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2323
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/64 (23%), Positives = 29/64 (45%)
Frame = +2
Query: 2 GTRNSRQINKKH*QENN*SFNVKFYMITKAMKDSKHSQAPIEDLSELRSYFASHNTTREY 181
GT+ ++ +K + N + K A + + +AP+ D+ EL+ A+ EY
Sbjct: 1748 GTKKNKDTKQKESRTRNAESSRKSDTYRGANESRRDYRAPVADIDELKQSIANVQEQEEY 1807
Query: 182 IAHS 193
+ S
Sbjct: 1808 VLSS 1811
>SB_21488| Best HMM Match : WD40 (HMM E-Value=3.5e-16)
Length = 675
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 149 YFASHNTTREYIAHSSKVHSVGWSCDGRKLASG 247
Y +T R Y H+ V S+ DGR +ASG
Sbjct: 162 YNLKKHTQRHYTQHTDDVKSLAVHPDGRTIASG 194
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,663,487
Number of Sequences: 59808
Number of extensions: 317797
Number of successful extensions: 715
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -