Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060087.seq
         (575 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   5.0  
DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex det...    21   8.7  
DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex det...    21   8.7  
DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex det...    21   8.7  
DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex det...    21   8.7  
DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex det...    21   8.7  
DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex det...    21   8.7  
DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex det...    21   8.7  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    21   8.7  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/35 (22%), Positives = 18/35 (51%)
 Frame = +2

Query: 182 IAHSSKVHSVGWSCDGRKLASGSFVKALQYLI*RG 286
           +A  +    + W  DG++L++   ++  QY+   G
Sbjct: 416 VASGNPTPEITWELDGKRLSNTERLQVGQYVTVNG 450


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 294 ESRFYFQRPHRLCRST 341
           E  FY +RP R C +T
Sbjct: 577 EVEFYKRRPQRACSTT 592


>DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -3

Query: 270 YCNAFTNDPEASFLPSQDQ 214
           YC  F + P   ++P Q+Q
Sbjct: 128 YCGNFPSRPMGPWVPMQEQ 146


>DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -3

Query: 270 YCNAFTNDPEASFLPSQDQ 214
           YC  F + P   ++P Q+Q
Sbjct: 128 YCGNFPSRPMGPWVPMQEQ 146


>DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -3

Query: 270 YCNAFTNDPEASFLPSQDQ 214
           YC  F + P   ++P Q+Q
Sbjct: 128 YCGNFPSRPMGPWVPMQEQ 146


>DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -3

Query: 270 YCNAFTNDPEASFLPSQDQ 214
           YC  F + P   ++P Q+Q
Sbjct: 128 YCGNFPSRPMGPWVPMQEQ 146


>DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -3

Query: 270 YCNAFTNDPEASFLPSQDQ 214
           YC  F + P   ++P Q+Q
Sbjct: 128 YCGNFPSRPMGPWVPMQEQ 146


>DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -3

Query: 270 YCNAFTNDPEASFLPSQDQ 214
           YC  F + P   ++P Q+Q
Sbjct: 128 YCGNFPSRPMGPWVPMQEQ 146


>DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -3

Query: 270 YCNAFTNDPEASFLPSQDQ 214
           YC  F + P   ++P Q+Q
Sbjct: 128 YCGNFPSRPMGPWVPMQEQ 146


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -3

Query: 270 YCNAFTNDPEASFLPSQDQ 214
           YC  F + P   ++P Q+Q
Sbjct: 131 YCGNFPSRPMGPWVPMQEQ 149


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,106
Number of Sequences: 438
Number of extensions: 2901
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)