Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060087.seq
(575 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g56130.1 68418.m07002 transducin family protein / WD-40 repea... 77 8e-15
At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless... 42 2e-04
At5g13480.1 68418.m01554 WD-40 repeat family protein similar to ... 40 9e-04
At4g22910.1 68417.m03309 WD-40 repeat family protein contains 6 ... 38 0.005
At5g10940.1 68418.m01269 transducin family protein / WD-40 repea... 38 0.006
At5g43920.1 68418.m05372 transducin family protein / WD-40 repea... 36 0.015
At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6 ... 36 0.019
At2g47790.1 68415.m05965 transducin family protein / WD-40 repea... 36 0.019
At4g18900.1 68417.m02786 transducin family protein / WD-40 repea... 36 0.026
At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pf... 35 0.045
At1g18830.1 68414.m02345 transducin family protein / WD-40 repea... 35 0.045
At1g52360.1 68414.m05909 coatomer protein complex, subunit beta ... 34 0.059
At3g15980.3 68416.m02022 coatomer protein complex, subunit beta ... 34 0.078
At3g15980.2 68416.m02021 coatomer protein complex, subunit beta ... 34 0.078
At3g15980.1 68416.m02020 coatomer protein complex, subunit beta ... 34 0.078
At2g19540.1 68415.m02283 transducin family protein / WD-40 repea... 34 0.078
At2g16780.1 68415.m01924 WD-40 repeat protein (MSI2) contains 5 ... 34 0.078
At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pf... 33 0.10
At5g08390.1 68418.m00988 transducin family protein / WD-40 repea... 33 0.10
At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7 ... 33 0.10
At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7 ... 33 0.10
At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7 ... 33 0.10
At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7 ... 33 0.10
At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7 ... 33 0.10
At1g52730.2 68414.m05959 transducin family protein / WD-40 repea... 33 0.10
At1g52730.1 68414.m05958 transducin family protein / WD-40 repea... 33 0.10
At5g58230.1 68418.m07290 WD-40 repeat protein (MSI1) contains 6 ... 33 0.14
At3g27640.1 68416.m03452 transducin family protein / WD-40 repea... 33 0.14
At3g15610.1 68416.m01980 transducin family protein / WD-40 repea... 33 0.14
At5g25150.1 68418.m02981 transducin family protein / WD-40 repea... 33 0.18
At4g33270.1 68417.m04734 WD-40 repeat family protein contains 6 ... 33 0.18
At4g33260.1 68417.m04733 WD-40 repeat family protein contains 6 ... 33 0.18
At4g28450.1 68417.m04071 transducin family protein / WD-40 repea... 33 0.18
At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 ... 32 0.24
At5g64730.1 68418.m08140 transducin family protein / WD-40 repea... 32 0.32
At4g32990.1 68417.m04692 transducin family protein / WD-40 repea... 32 0.32
At1g29260.1 68414.m03578 peroxisomal targeting signal type 2 rec... 32 0.32
At5g27570.1 68418.m03302 WD-40 repeat family protein contains 5 ... 31 0.42
At5g42010.1 68418.m05114 WD-40 repeat family protein contains Pf... 31 0.55
At4g18905.1 68417.m02787 transducin family protein / WD-40 repea... 31 0.55
At5g16750.1 68418.m01961 transducin family protein / WD-40 repea... 31 0.73
At5g08560.1 68418.m01018 transducin family protein / WD-40 repea... 31 0.73
At3g63460.2 68416.m07146 WD-40 repeat family protein hypothetica... 31 0.73
At3g63460.1 68416.m07145 WD-40 repeat family protein hypothetica... 31 0.73
At2g40360.1 68415.m04977 transducin family protein / WD-40 repea... 31 0.73
At1g15470.1 68414.m01860 transducin family protein / WD-40 repea... 31 0.73
At5g27080.1 68418.m03231 WD-40 repeat family protein contains 5 ... 30 0.96
At5g26900.1 68418.m03208 WD-40 repeat family protein contains 5 ... 30 0.96
At3g20740.1 68416.m02624 fertilization-independent endosperm pro... 30 0.96
At2g43770.1 68415.m05441 transducin family protein / WD-40 repea... 30 0.96
At2g22040.1 68415.m02617 transducin family protein / WD-40 repea... 30 0.96
At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha... 30 0.96
At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha... 30 0.96
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi... 30 1.3
At1g80670.1 68414.m09466 transducin family protein / WD-40 repea... 30 1.3
At5g27945.1 68418.m03364 transducin family protein / WD-40 repea... 29 1.7
At4g35050.1 68417.m04974 WD-40 repeat protein (MSI3) contains 5 ... 29 1.7
At1g64610.2 68414.m07324 WD-40 repeat family protein contains Pf... 29 1.7
At1g64610.1 68414.m07323 WD-40 repeat family protein contains Pf... 29 1.7
At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta... 29 2.2
At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta... 29 2.2
At2g26060.1 68415.m03129 transducin family protein / WD-40 repea... 29 2.2
At4g03020.1 68417.m00410 transducin family protein / WD-40 repea... 29 2.9
At1g10580.1 68414.m01192 transducin family protein / WD-40 repea... 29 2.9
At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG) co... 28 3.9
At1g71840.1 68414.m08302 transducin family protein / WD-40 repea... 28 3.9
At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6 ... 28 5.1
At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6 ... 28 5.1
At5g63010.1 68418.m07905 WD-40 repeat family protein contains 4 ... 27 6.8
At5g19920.1 68418.m02370 transducin family protein / WD-40 repea... 27 6.8
At4g04940.1 68417.m00718 transducin family protein / WD-40 repea... 27 6.8
At3g18140.1 68416.m02306 transducin family protein / WD-40 repea... 27 9.0
>At5g56130.1 68418.m07002 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to beta transducin-like protein HET-E2C*4
(GI:17225206) [Podospora anserina]
Length = 315
Score = 77.0 bits (181), Expect = 8e-15
Identities = 37/83 (44%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Frame = +1
Query: 250 IRKSVAIFNLERSRLSQ--DFIFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSH 423
+ ++ I+N+E S+ D KGHT SVDQLCW L++TASGDKSVR W RS
Sbjct: 40 VDQTARIWNIEPHGHSKAKDLELKGHTDSVDQLCWDPKHSDLVATASGDKSVRLWDARSG 99
Query: 424 KXAATIPTKGXNLNIAWAPNGQH 492
K + G N+NI + P+G H
Sbjct: 100 KCTQQVELSGENINITYKPDGTH 122
Score = 41.1 bits (92), Expect = 5e-04
Identities = 17/27 (62%), Positives = 20/27 (74%)
Frame = +2
Query: 170 TREYIAHSSKVHSVGWSCDGRKLASGS 250
+REY H KVHSV W+ +G KLASGS
Sbjct: 13 SREYQGHKKKVHSVAWNSNGTKLASGS 39
>At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless
protein, putative similar to notchless [Xenopus laevis]
GI:3687833; contains Pfam PF00400: WD domain, G-beta
repeat (8 copies)
Length = 473
Score = 42.3 bits (95), Expect = 2e-04
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +1
Query: 307 IFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAATIPTKGXNL-NIAWAPN 483
+F+GH G V Q+ W A LLS S D +++ W R+ K +P + + W+P+
Sbjct: 397 VFRGHVGPVYQVSWSADSRLLLS-GSKDSTLKIWEIRTKKLKQDLPGHADEVFAVDWSPD 455
Query: 484 GQ 489
G+
Sbjct: 456 GE 457
Score = 33.5 bits (73), Expect = 0.10
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Frame = +1
Query: 247 VIRKSVAIFNLER-SRLSQDFIFKGHTGSVDQLCWHASXPXL-LSTASGDKSVRXWXTRS 420
++ + A+F + +R SQ GH +V LC S L++ SGD +VR W +
Sbjct: 85 IVYQQQAVFRIRPVNRCSQTIA--GHAEAV--LCVSFSPDGKQLASGSGDTTVRLWDLYT 140
Query: 421 HKXAATIPT-KGXNLNIAWAPNGQH 492
T K L +AW+P+G+H
Sbjct: 141 ETPLFTCKGHKNWVLTVAWSPDGKH 165
Score = 27.5 bits (58), Expect = 6.8
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 188 HSSKVHSVGWSCDGRKLASGSFVKALQ 268
H+ +V +V WS DG K+ SG + L+
Sbjct: 443 HADEVFAVDWSPDGEKVVSGGKDRVLK 469
>At5g13480.1 68418.m01554 WD-40 repeat family protein similar to
WD-repeat protein WDC146 (SP:Q9C0J8|) {Homo sapiens};
contains 3 weak Pfam PF00400: WD domain, G-beta repeats;
Length = 711
Score = 40.3 bits (90), Expect = 9e-04
Identities = 27/95 (28%), Positives = 37/95 (38%), Gaps = 4/95 (4%)
Frame = +1
Query: 226 W*KAGFWVIRKSV-AIFNLERSRLSQDF-IFKGHTGSVDQLCWHASXPXLLSTASGDKSV 399
W + G W++ S I L R ++ F+GHT V L WH + S D S+
Sbjct: 318 WNQNGNWLLTASKDQIIKLYDIRTMKELQSFRGHTKDVTSLAWHPCHEEYFVSGSSDGSI 377
Query: 400 RXWXTRSHKXAATIPTKGXN--LNIAWAPNGQHHC 498
W IP N ++AW P G C
Sbjct: 378 CHWIVGHENPQIEIPNAHDNSVWDLAWHPIGYLLC 412
>At4g22910.1 68417.m03309 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similar to fizzy-related
protein (GI:5813825) Drosophila melanogaster,
PID:g2326419;
Length = 518
Score = 37.9 bits (84), Expect = 0.005
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +1
Query: 310 FKGHTGSVDQLCWHASXPXLLSTASG--DKSVRXWXTRSHKXAATIPTKGXNLNIAWAPN 483
+ HT +V + W LL++ G D+ +R W T ++ ++I T N+AW+ N
Sbjct: 373 YSEHTAAVKAIAWSPHVHGLLASGGGTADRCIRFWNTTTNTHLSSIDTCSQVCNLAWSKN 432
>At5g10940.1 68418.m01269 transducin family protein / WD-40 repeat
family protein unnamed ORF cDNA FLJ10872, Homo sapiens,
EMBL:AK001734; contains Pfam PF00400: WD domain, G-beta
repeat (6 copies,1 weak)
Length = 757
Score = 37.5 bits (83), Expect = 0.006
Identities = 22/60 (36%), Positives = 31/60 (51%)
Frame = +1
Query: 289 RLSQDFIFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAATIPTKGXNLNI 468
RLSQ+ +GH G V+ L W+++ L+S S D + W S K +I T G NI
Sbjct: 39 RLSQEQELEGHQGCVNALAWNSNGSLLIS-GSDDLRINIWNYSSRKLLHSIDT-GHTANI 96
>At5g43920.1 68418.m05372 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 523
Score = 36.3 bits (80), Expect = 0.015
Identities = 15/49 (30%), Positives = 32/49 (65%)
Frame = +1
Query: 262 VAIFNLERSRLSQDFIFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXW 408
V I+NL+ ++ + + GH+ +V+ + W+ P +L++AS D+++R W
Sbjct: 467 VYIWNLKNTKPLE--VLSGHSMTVNCVSWNPKNPRMLASASDDQTIRIW 513
>At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similar to Fzr1
(GI:6463679){Homo sapiens}
Length = 481
Score = 35.9 bits (79), Expect = 0.019
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +1
Query: 319 HTGSVDQLCWHASXPXLLSTASG--DKSVRXWXTRSHKXAATIPTKGXNLNIAWAPN 483
HT +V + W LL++ G D+ +R W T + +I T N+AW+ N
Sbjct: 339 HTAAVKAITWSPHQSSLLASGGGTADRCIRFWNTTNGNQLNSIDTGSQVCNLAWSKN 395
Score = 27.1 bits (57), Expect = 9.0
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 182 IAHSSKVHSVGWSCDGRKLASG 247
+ H S+V + WS D R+LASG
Sbjct: 295 VGHKSEVCGLKWSHDDRELASG 316
>At2g47790.1 68415.m05965 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 5
(SP:Q9UGP9) [Homo sapiens]; The first 3 exons are
identical to that of GB:AJ224957. This gene appears to
be a truncated version of that in GB:AJ224957; contains
4 WD-40 repeats (PF00400)
Length = 392
Score = 35.9 bits (79), Expect = 0.019
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Frame = +1
Query: 313 KGHTGSVDQLCWH---ASXPXLLSTASGDKSVRXWXTRSHKXAATIPT 447
KGH+ +V+Q+ + A+ P +L + S D ++R W TRS + + I T
Sbjct: 80 KGHSDTVNQIAFSSDSAASPHVLHSCSSDGTIRSWDTRSFQQVSRIDT 127
>At4g18900.1 68417.m02786 transducin family protein / WD-40 repeat
family protein contains 5 (4 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 461
Score = 35.5 bits (78), Expect = 0.026
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = +1
Query: 274 NLERSRLSQDFIFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHK---XAATIP 444
++ S + F GH + + ++ S P LL+T S D++V+ W +++ A P
Sbjct: 353 SISASESNPSFTINGHDEAATSVSYNISAPNLLATGSKDRTVKLWDLSNNEPSCIATHNP 412
Query: 445 TKGXNLNIAWAPN 483
G IA++P+
Sbjct: 413 NAGGLFFIAFSPD 425
Score = 31.1 bits (67), Expect = 0.55
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 319 HTGSVDQLCWHASXPXLLSTASGDKSVRXW 408
HT SV L W+ +L++AS DK V+ W
Sbjct: 232 HTRSVLGLAWNKEFRNILASASADKKVKVW 261
>At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]; similar to rab11 binding protein GI:4512103
from [Bos taurus]
Length = 593
Score = 34.7 bits (76), Expect = 0.045
Identities = 18/33 (54%), Positives = 20/33 (60%)
Frame = +1
Query: 316 GHTGSVDQLCWHASXPXLLSTASGDKSVRXWXT 414
GHTG V L W S LL +AS DK+VR W T
Sbjct: 270 GHTGDVLDLAW--SDSNLLLSASKDKTVRLWRT 300
>At1g18830.1 68414.m02345 transducin family protein / WD-40 repeat
family protein similar to Sec31p (GI:13928450) {Oryza
sativa}
Length = 969
Score = 34.7 bits (76), Expect = 0.045
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +1
Query: 310 FKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAATIPT-KGXNLNIAWAP 480
F GH V + W S L T D W T++ K A +PT + N ++ W P
Sbjct: 248 FVGHQRGVIAMEWCPSDSLYLLTCGKDNRTICWNTKTGKIVAELPTGQNWNFDVHWYP 305
>At1g52360.1 68414.m05909 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to (SP:O55029) Coatomer
beta' subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:O55029) [Mus musculus]; similar to GI:298096 from
[Homo sapiens]
Length = 926
Score = 34.3 bits (75), Expect = 0.059
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +1
Query: 313 KGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAATI 441
+GHT +V +C+H P ++ T S D +VR W +++ T+
Sbjct: 226 EGHTHNVSAVCFHPELPIII-TGSEDGTVRIWHATTYRLENTL 267
>At3g15980.3 68416.m02022 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 33.9 bits (74), Expect = 0.078
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +1
Query: 316 GHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAATI 441
GHT +V +C+H P ++ T S D +VR W +++ T+
Sbjct: 227 GHTHNVSAVCFHPELPIII-TGSEDGTVRIWHATTYRLENTL 267
>At3g15980.2 68416.m02021 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 33.9 bits (74), Expect = 0.078
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +1
Query: 316 GHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAATI 441
GHT +V +C+H P ++ T S D +VR W +++ T+
Sbjct: 227 GHTHNVSAVCFHPELPIII-TGSEDGTVRIWHATTYRLENTL 267
>At3g15980.1 68416.m02020 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 909
Score = 33.9 bits (74), Expect = 0.078
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +1
Query: 316 GHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAATI 441
GHT +V +C+H P ++ T S D +VR W +++ T+
Sbjct: 227 GHTHNVSAVCFHPELPIII-TGSEDGTVRIWHATTYRLENTL 267
>At2g19540.1 68415.m02283 transducin family protein / WD-40 repeat
family protein contains WD-40 repeats (PF00400); similar
to Glutamate-rich WD repeat protein (GRWD)
(SP:Q9BQ67)[Homo sapiens]
Length = 469
Score = 33.9 bits (74), Expect = 0.078
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = +1
Query: 310 FKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAATIPTKGXNLNI 468
F GHT SV+ L W + + ++ S D SV W R K A + K N ++
Sbjct: 265 FAGHTASVEDLQWSPAEENVFASCSVDGSVAVWDIRLGKSPA-LSFKAHNADV 316
>At2g16780.1 68415.m01924 WD-40 repeat protein (MSI2) contains 5
WD-40 repeats (PF0400); identical to WD-40 repeat
protein MSI2 (SP:O22468) [Arabidopsis thaliana] WD-40
repeats (PF0400);
Length = 415
Score = 33.9 bits (74), Expect = 0.078
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = +1
Query: 292 LSQDFIFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHK 426
L+ F+++GH ++ + WH L +A D + W TR+++
Sbjct: 207 LNAMFVYEGHESAIADVSWHMKNENLFGSAGEDGRLVIWDTRTNQ 251
Score = 28.3 bits (60), Expect = 3.9
Identities = 8/35 (22%), Positives = 18/35 (51%)
Frame = +1
Query: 304 FIFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXW 408
F GH + W+ + P ++++ + D S++ W
Sbjct: 357 FSHGGHKAKISDFAWNKNEPWVIASVAEDNSLQVW 391
>At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 654
Score = 33.5 bits (73), Expect = 0.10
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = +1
Query: 310 FKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSH 423
F+GHTG V + W S L +AS DK+VR W S+
Sbjct: 324 FRGHTGEVLDISW--SKDNYLLSASMDKTVRLWKVGSN 359
>At5g08390.1 68418.m00988 transducin family protein / WD-40 repeat
family protein similar to katanin p80 subunit
[Strongylocentrotus purpuratus] GI:3005601; contains
Pfam profile PF00400: WD domain, G-beta repeat
Length = 871
Score = 33.5 bits (73), Expect = 0.10
Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Frame = +1
Query: 262 VAIFNLERSRLSQDFIFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAATI 441
V +++L +L +F K H G + L +H LL+T S DK+V+ W + + +
Sbjct: 260 VKVWDLTAGKLLHEF--KSHEGKIQSLDFHPHE-FLLATGSADKTVKFWDLETFELIGSG 316
Query: 442 PTKGXNLN-IAWAPNGQH-HCGWGQGVXV 522
T+ + + + P+G+ CG + + +
Sbjct: 317 GTETTGVRCLTFNPDGKSVLCGLQESLKI 345
>At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 785
Score = 33.5 bits (73), Expect = 0.10
Identities = 18/54 (33%), Positives = 33/54 (61%)
Frame = +1
Query: 259 SVAIFNLERSRLSQDFIFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRS 420
+V+IF++E + + IFKGH+ +V +CW + L+++ S D +V+ W S
Sbjct: 655 TVSIFDIENNNKRVN-IFKGHSSNVHSVCWSPNG-ELVASVSED-AVKLWSLSS 705
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +2
Query: 188 HSSKVHSVGWSCDGRKLASGS 250
HSS VHSV WS +G +AS S
Sbjct: 674 HSSNVHSVCWSPNGELVASVS 694
>At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 33.5 bits (73), Expect = 0.10
Identities = 18/54 (33%), Positives = 33/54 (61%)
Frame = +1
Query: 259 SVAIFNLERSRLSQDFIFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRS 420
+V+IF++E + + IFKGH+ +V +CW + L+++ S D +V+ W S
Sbjct: 657 TVSIFDIENNNKRVN-IFKGHSSNVHSVCWSPNG-ELVASVSED-AVKLWSLSS 707
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +2
Query: 188 HSSKVHSVGWSCDGRKLASGS 250
HSS VHSV WS +G +AS S
Sbjct: 676 HSSNVHSVCWSPNGELVASVS 696
>At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 33.5 bits (73), Expect = 0.10
Identities = 18/54 (33%), Positives = 33/54 (61%)
Frame = +1
Query: 259 SVAIFNLERSRLSQDFIFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRS 420
+V+IF++E + + IFKGH+ +V +CW + L+++ S D +V+ W S
Sbjct: 657 TVSIFDIENNNKRVN-IFKGHSSNVHSVCWSPNG-ELVASVSED-AVKLWSLSS 707
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +2
Query: 188 HSSKVHSVGWSCDGRKLASGS 250
HSS VHSV WS +G +AS S
Sbjct: 676 HSSNVHSVCWSPNGELVASVS 696
>At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 33.5 bits (73), Expect = 0.10
Identities = 18/54 (33%), Positives = 33/54 (61%)
Frame = +1
Query: 259 SVAIFNLERSRLSQDFIFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRS 420
+V+IF++E + + IFKGH+ +V +CW + L+++ S D +V+ W S
Sbjct: 657 TVSIFDIENNNKRVN-IFKGHSSNVHSVCWSPNG-ELVASVSED-AVKLWSLSS 707
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +2
Query: 188 HSSKVHSVGWSCDGRKLASGS 250
HSS VHSV WS +G +AS S
Sbjct: 676 HSSNVHSVCWSPNGELVASVS 696
>At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 33.5 bits (73), Expect = 0.10
Identities = 18/54 (33%), Positives = 33/54 (61%)
Frame = +1
Query: 259 SVAIFNLERSRLSQDFIFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRS 420
+V+IF++E + + IFKGH+ +V +CW + L+++ S D +V+ W S
Sbjct: 657 TVSIFDIENNNKRVN-IFKGHSSNVHSVCWSPNG-ELVASVSED-AVKLWSLSS 707
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +2
Query: 188 HSSKVHSVGWSCDGRKLASGS 250
HSS VHSV WS +G +AS S
Sbjct: 676 HSSNVHSVCWSPNGELVASVS 696
>At1g52730.2 68414.m05959 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to UNR-interacting protein (WD-40 repeat protein
PT-WD) (SP:Q9Y3F4) [Homo sapiens]
Length = 343
Score = 33.5 bits (73), Expect = 0.10
Identities = 21/79 (26%), Positives = 36/79 (45%)
Frame = +1
Query: 256 KSVAIFNLERSRLSQDFIFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAA 435
K + +F++ R + K GS+ L W S +LS+ + VR W RS K
Sbjct: 124 KILRVFDMNRLDAPPTEVDKS-PGSIRTLTWLHSDQTILSSCTDIGGVRLWDVRSGKIVQ 182
Query: 436 TIPTKGXNLNIAWAPNGQH 492
T+ TK + + +G++
Sbjct: 183 TLETKSPVTSAEVSQDGRY 201
>At1g52730.1 68414.m05958 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to UNR-interacting protein (WD-40 repeat protein
PT-WD) (SP:Q9Y3F4) [Homo sapiens]
Length = 343
Score = 33.5 bits (73), Expect = 0.10
Identities = 21/79 (26%), Positives = 36/79 (45%)
Frame = +1
Query: 256 KSVAIFNLERSRLSQDFIFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAA 435
K + +F++ R + K GS+ L W S +LS+ + VR W RS K
Sbjct: 124 KILRVFDMNRLDAPPTEVDKS-PGSIRTLTWLHSDQTILSSCTDIGGVRLWDVRSGKIVQ 182
Query: 436 TIPTKGXNLNIAWAPNGQH 492
T+ TK + + +G++
Sbjct: 183 TLETKSPVTSAEVSQDGRY 201
>At5g58230.1 68418.m07290 WD-40 repeat protein (MSI1) contains 6
WD-40 repeats (PF0400); identical to WD-40 repeat
protein (SP:O22467) [Arabidopsis thaliana]
Length = 424
Score = 33.1 bits (72), Expect = 0.14
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +1
Query: 307 IFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRS 420
IFK H G V+ + WH L + D+ + W RS
Sbjct: 222 IFKAHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRS 259
>At3g27640.1 68416.m03452 transducin family protein / WD-40 repeat
family protein contains seven WD-40 G-protein beta
repeats; similar to RA-regulated nuclear
matrix-associated protein (GI:14161320) {Homo sapiens}
Length = 535
Score = 33.1 bits (72), Expect = 0.14
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Frame = +1
Query: 256 KSVAIFNLERSRLSQDFIFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTR----SH 423
+++ ++++E ++ + I GHTG+V +C H + LL + S D W R SH
Sbjct: 150 QTIKVWDVEENKCTGVLI--GHTGTVKSMCSHPTNSDLLVSGSRDGCFALWDLRCKSSSH 207
Query: 424 KXAATIPTKG 453
K I + G
Sbjct: 208 KEEFCINSTG 217
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = +1
Query: 274 NLERSRLSQDFIFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAATI 441
N E++R +D+I H ++ + W LL TASGD++++ W +K +
Sbjct: 115 NTEKARF-RDWI--AHYNAIFDISWIKGDSCLL-TASGDQTIKVWDVEENKCTGVL 166
Score = 29.1 bits (62), Expect = 2.2
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +1
Query: 307 IFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXW 408
I KGH V + W S ++TAS D +VR W
Sbjct: 376 ILKGHDFEVTAVDWSPSEIGKVATASDDFTVRLW 409
>At3g15610.1 68416.m01980 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to serine/threonine kinase receptor associated
protein GB:NP_035629 (SP:Q9Z1Z2) [Mus musculus];
UNR-interacting protein GB:NP_009109 [Homo sapiens]
Length = 341
Score = 33.1 bits (72), Expect = 0.14
Identities = 22/79 (27%), Positives = 35/79 (44%)
Frame = +1
Query: 256 KSVAIFNLERSRLSQDFIFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAA 435
K + +F+L R I K GS+ L W +LS+ + VR W RS K
Sbjct: 124 KILRVFDLNRLDAPPTEIDKS-PGSIRTLTWLHGDQTILSSCTDIGGVRLWDVRSGKIVQ 182
Query: 436 TIPTKGXNLNIAWAPNGQH 492
T+ TK + + +G++
Sbjct: 183 TLETKSPVTSAEVSQDGRY 201
>At5g25150.1 68418.m02981 transducin family protein / WD-40 repeat
family protein similar to TBP-associated factor
(GI:1732075) [Homo sapiens] and to 100 kDa subunit of
Pol II transcription factor (GI:1491718) {Homo sapiens];
contains Pfam PF00400: WD domain, G-beta repeat (6
copies)|8689032|gb|AV528749.1|AV528749
Length = 666
Score = 32.7 bits (71), Expect = 0.18
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +1
Query: 307 IFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAAT-IPTKGXNLNIAWAPN 483
I GH VD WH + ++T S DK+VR W ++ + I + L++A +P+
Sbjct: 497 IMAGHLSDVD---WHPNC-NYIATGSSDKTVRLWDVQTGECVRIFIGHRSMVLSLAMSPD 552
Query: 484 GQH 492
G++
Sbjct: 553 GRY 555
>At4g33270.1 68417.m04734 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); WD-repeat protein -Daucus
carota,PID:g2253631
Length = 457
Score = 32.7 bits (71), Expect = 0.18
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +1
Query: 319 HTGSVDQLCWHASXPXLLSTASG--DKSVRXWXTRSHKXAATIPTKGXNLNIAWAPN 483
HT +V L W LL+T G D++++ W T + ++ T ++ W+ N
Sbjct: 313 HTSAVKALAWCPFQANLLATGGGGGDRTIKFWNTHTGACLNSVDTGSQVCSLLWSKN 369
>At4g33260.1 68417.m04733 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); WD-repeat protein -Daucus
carota, PID:g2253631
Length = 447
Score = 32.7 bits (71), Expect = 0.18
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +1
Query: 319 HTGSVDQLCWHASXPXLLSTASG--DKSVRXWXTRSHKXAATIPTKGXNLNIAWAPN 483
HT +V L W LL+T G D++++ W T + ++ T ++ W+ N
Sbjct: 303 HTSAVKALAWCPFQANLLATGGGGGDRTIKFWNTHTGACLNSVDTGSQVCSLLWSKN 359
>At4g28450.1 68417.m04071 transducin family protein / WD-40 repeat
family protein SOF1 (involved in rRNA processing)
protein-yeast
Length = 442
Score = 32.7 bits (71), Expect = 0.18
Identities = 22/71 (30%), Positives = 35/71 (49%)
Frame = +1
Query: 268 IFNLERSRLSQDFIFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAATIPT 447
I+N RS+ Q F + T SV + ++ P LL+T++ D+S+ + R A I
Sbjct: 177 IWNHNRSQPVQSF--QWGTDSVISVRFNPGEPNLLATSASDRSITIYDLRLSSAARKIIM 234
Query: 448 KGXNLNIAWAP 480
+IAW P
Sbjct: 235 MTKTNSIAWNP 245
>At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 WD
repeats (PF00400); similar to Fzr1 (GI:6463679) {Homo
sapiens}; similar to WD repeat protein Srw1
-Schizosaccharomyces pombe,PID:d1023012
Length = 475
Score = 32.3 bits (70), Expect = 0.24
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Frame = +1
Query: 310 FKGHTGSVDQLCWHASXPXLLSTASG--DKSVRXWXTRSHKXAATIPTKGXNLNIAWAPN 483
F H +V + W LL++ G D+ +R W T ++ + T N+ W+ N
Sbjct: 330 FCEHAAAVKAIAWSPHHFGLLASGGGTADRCIRFWNTTTNTHLNCVDTNSQVCNLVWSKN 389
>At5g64730.1 68418.m08140 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to Will die slowly protein (SP:Q9V3J8) [Fruit
fly] {Drosophila m.]
Length = 299
Score = 31.9 bits (69), Expect = 0.32
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +1
Query: 310 FKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSH 423
F+GH G V+ + ++ S ++S A D+S+R W RSH
Sbjct: 98 FRGHDGEVNAVKFNDSSSVVVS-AGFDRSLRVWDCRSH 134
>At4g32990.1 68417.m04692 transducin family protein / WD-40 repeat
family protein HIRA protein, Drosophila melanogaster,
PID:e1250847
Length = 318
Score = 31.9 bits (69), Expect = 0.32
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +1
Query: 313 KGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRS 420
+GHT V + W+ + ++++ S DK+VR W S
Sbjct: 17 EGHTDRVWNVAWNPAADGVIASCSADKTVRIWEQSS 52
Score = 30.7 bits (66), Expect = 0.73
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 307 IFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXW 408
+ +GH V + W+AS LL+T DKSV W
Sbjct: 87 VLRGHESEVKSVSWNASG-SLLATCGRDKSVWIW 119
>At1g29260.1 68414.m03578 peroxisomal targeting signal type 2
receptor (PEX7) identical to peroxisomal targeting
signal type 2 receptor (Pex7p) (GI:9502414) [Arabidopsis
thaliana]; WD-40 repeat protein family member; contains
6 WD-40 repeats (PF00400); similar to peroxismal
targeting signal 2 receptor (PTS2R) (Peroxin-7)
(PEX7)(SP:O00628) [Homo sapiens]
Length = 317
Score = 31.9 bits (69), Expect = 0.32
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +1
Query: 310 FKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAATIP 444
FK H V Q W+ + ++ASGD ++R W R IP
Sbjct: 145 FKEHAYCVYQAVWNPKHGDVFASASGDCTLRIWDVREPGSTMIIP 189
Score = 29.1 bits (62), Expect = 2.2
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +1
Query: 307 IFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHK 426
I H + W+ +L+T+S DK+V+ W RS++
Sbjct: 187 IIPAHDFEILSCDWNKYDDCILATSSVDKTVKVWDVRSYR 226
>At5g27570.1 68418.m03302 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to fizzy1 (GI:3298595)
{Xenopus laevis}; similar to "Will die slowly" protein,
Drosophia; putative cdc20 protein - Arabidopsis
thaliana, EMBL:AF029262
Length = 411
Score = 31.5 bits (68), Expect = 0.42
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Frame = +1
Query: 256 KSVAIFNLERSRLSQDFIFKGHTGSVDQLCWHASXPXLLSTAS--GDKSVRXWXTRSHKX 429
+SVA N R L + F+ HT +V L W LL+T GD ++ W T +
Sbjct: 248 RSVASSNPTRQWLHR---FEEHTAAVRALAWCPFQASLLATGGGVGDGKIKFWNTHTGAC 304
Query: 430 AATIPTKGXNLNIAWA 477
++ T ++ W+
Sbjct: 305 LNSVETGSQVCSLLWS 320
Score = 28.7 bits (61), Expect = 2.9
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 179 YIAHSSKVHSVGWSCDGRKLASG 247
Y+ H+ +V + WS G+KLASG
Sbjct: 214 YLGHTEEVCGLKWSESGKKLASG 236
>At5g42010.1 68418.m05114 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 709
Score = 31.1 bits (67), Expect = 0.55
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +1
Query: 310 FKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRS 420
F+GHTG + L W S L ++S D++VR W S
Sbjct: 359 FRGHTGEILDLSW--SEKGFLLSSSVDETVRLWRVGS 393
>At4g18905.1 68417.m02787 transducin family protein / WD-40 repeat
family protein contains 5 (4 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 494
Score = 31.1 bits (67), Expect = 0.55
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 319 HTGSVDQLCWHASXPXLLSTASGDKSVRXW 408
HT SV L W+ +L++AS DK V+ W
Sbjct: 264 HTESVLGLAWNKEFRNILASASADKKVKVW 293
Score = 30.3 bits (65), Expect = 0.96
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Frame = +1
Query: 286 SRLSQDFIFKGHTGS--VDQLCWHASXPXLLSTASGDKSVRXWXTRSHK---XAATIPTK 450
S L+ + + H V + ++ S P LL+T S DKSV+ W +++ A P
Sbjct: 390 SDLNPTYTIQAHAQDRGVSSISYNISTPNLLATGSMDKSVKLWDLSNNEPSCIATHQPNA 449
Query: 451 GXNLNIAWA 477
G +I++A
Sbjct: 450 GAVFSISFA 458
>At5g16750.1 68418.m01961 transducin family protein / WD-40 repeat
family protein contains 8 WD-40 repeats (PF00400);
similar to transducin homolog sazD - Homo sapiens,
EMBL:U02609
Length = 876
Score = 30.7 bits (66), Expect = 0.73
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +1
Query: 256 KSVAIFNLERSRLSQDFIFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXW 408
+ + +++LE + + + KGH G V + HAS LL+TA D+ V W
Sbjct: 82 RQIRVWDLETLKCIRSW--KGHEGPVMGMACHASG-GLLATAGADRKVLVW 129
Score = 27.5 bits (58), Expect = 6.8
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +1
Query: 292 LSQDFIFKGHTGSVDQL--CWHASXPXLLSTASGDKSVRXWXTRS 420
+S ++ GH V L C +S L+ T S DK+VR W S
Sbjct: 391 MSCSYVLAGHKEVVLSLDTCVSSSGNVLIVTGSKDKTVRLWNATS 435
>At5g08560.1 68418.m01018 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 589
Score = 30.7 bits (66), Expect = 0.73
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +1
Query: 316 GHTGSVDQLCWHASXPXLLSTASGDKSVRXW 408
GH G+V+ + W + +L++AS D ++R W
Sbjct: 529 GHAGAVNCVSWSPTNLHMLASASDDGTIRIW 559
>At3g63460.2 68416.m07146 WD-40 repeat family protein hypothetical
protein contains similarity to ec31p [Oryza sativa]
gi|13928450|dbj|BAB47154; contains Pfam profile PF00400:
WD domain, G-beta repeat
Length = 1102
Score = 30.7 bits (66), Expect = 0.73
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Frame = +1
Query: 310 FKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAATIPT-KGXNLNIAWAP 480
F GH V + W S L T + D W T + + A +P N ++ W P
Sbjct: 259 FTGHQRGVIAMEWCPSDSSYLLTCAKDNRTICWDTNTAEIVAELPAGNNWNFDVHWYP 316
>At3g63460.1 68416.m07145 WD-40 repeat family protein hypothetical
protein contains similarity to ec31p [Oryza sativa]
gi|13928450|dbj|BAB47154; contains Pfam profile PF00400:
WD domain, G-beta repeat
Length = 1104
Score = 30.7 bits (66), Expect = 0.73
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Frame = +1
Query: 310 FKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAATIPT-KGXNLNIAWAP 480
F GH V + W S L T + D W T + + A +P N ++ W P
Sbjct: 259 FTGHQRGVIAMEWCPSDSSYLLTCAKDNRTICWDTNTAEIVAELPAGNNWNFDVHWYP 316
>At2g40360.1 68415.m04977 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to block of proliferation protein Bop1
(GI:1679772) [Mus musculus]
Length = 753
Score = 30.7 bits (66), Expect = 0.73
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +1
Query: 310 FKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAATIPTKGXNLNIAWAP 480
+KGHTG+V + +S + S S D SVR W + + + +AW P
Sbjct: 419 YKGHTGAVTSISTDSSGEWIAS-GSTDGSVRMWEVETGRCLKVWQFDEAIMCVAWNP 474
>At1g15470.1 68414.m01860 transducin family protein / WD-40 repeat
family protein Strong similarity to gb AF096285
serine-threonine kinase receptor-associated protein from
Mus musculus and contains 5 PF|00400 WD40, G-beta repeat
domains. EST gb|F14050 comes from this gene
Length = 333
Score = 30.7 bits (66), Expect = 0.73
Identities = 20/81 (24%), Positives = 36/81 (44%)
Frame = +1
Query: 250 IRKSVAIFNLERSRLSQDFIFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKX 429
+ K + IF+L R + GS+ + W S +LS+ + +R W RS K
Sbjct: 117 MEKILRIFDLNRPDAPPKEVGNS-PGSIRTVEWLHSDNTILSSCTDTGDIRLWDIRSDKI 175
Query: 430 AATIPTKGXNLNIAWAPNGQH 492
T+ TK + + +G++
Sbjct: 176 VHTLETKSPVTSAEVSQDGRY 196
>At5g27080.1 68418.m03231 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to fizzy1 (GI:3298595)
{Xenopus laevis};
Length = 466
Score = 30.3 bits (65), Expect = 0.96
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = +1
Query: 310 FKGHTGSVDQLCWHASXPXLLSTAS--GDKSVRXWXTRSHKXAATIPTKGXNLNIAWA 477
F+ HT +V L W LL+T GD ++ W T + ++ T ++ W+
Sbjct: 294 FEEHTAAVRALAWCPFQATLLATGGGVGDGKIKFWNTHTGACLNSVETGSQVCSLLWS 351
Score = 28.7 bits (61), Expect = 2.9
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 179 YIAHSSKVHSVGWSCDGRKLASG 247
Y+ H+ +V + WS G+KLASG
Sbjct: 245 YLGHTEEVCGLKWSESGKKLASG 267
>At5g26900.1 68418.m03208 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to fizzy1 (GI:3298595)
{Xenopus laevis}; WD-repeat protein, carrot, PIR:T14352
Length = 444
Score = 30.3 bits (65), Expect = 0.96
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = +1
Query: 310 FKGHTGSVDQLCWHASXPXLLSTAS--GDKSVRXWXTRSHKXAATIPTKGXNLNIAWA 477
F+ HT +V L W LL+T GD ++ W T + ++ T ++ W+
Sbjct: 296 FEEHTAAVRALAWCPFQASLLATGGGVGDGKIKFWNTHTGACLNSVETGSQVCSLLWS 353
>At3g20740.1 68416.m02624 fertilization-independent endosperm
protein (FIE) contains 6 WD-40 repeats (PF00400);
identical to fertilization-independent endosperm protein
(GI:4567095) [Arabidopsis thaliana]
Length = 369
Score = 30.3 bits (65), Expect = 0.96
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +1
Query: 316 GHTGSVDQLCWHASXPXLLSTASGDKSVRXW 408
GH SV+++ P L+ TAS D+SVR W
Sbjct: 126 GHGDSVNEIRTQPLKPQLVITASKDESVRLW 156
>At2g43770.1 68415.m05441 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to U5 snRNP-specific 40 kDa protein (GI:3820594)
[Homo sapiens]
Length = 343
Score = 30.3 bits (65), Expect = 0.96
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 307 IFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHK 426
+ KGH ++ L W + ++S AS DK+VR W + K
Sbjct: 91 VLKGHKNAILDLHWTSDGSQIVS-ASPDKTVRAWDVETGK 129
Score = 29.1 bits (62), Expect = 2.2
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +1
Query: 316 GHTGSVDQLCWHASXPXLLSTASGDKSV 399
GHTGSV++ +H + P ++ + S DK++
Sbjct: 312 GHTGSVNECVFHPTEP-IIGSCSSDKNI 338
>At2g22040.1 68415.m02617 transducin family protein / WD-40 repeat
family protein similar to Pop3 (GI:3434986)
[Schizosaccharomyces pombe]; contains Pfam PF00400: WD
domain, G-beta repeat (6 copies, 2 weak);
Length = 312
Score = 30.3 bits (65), Expect = 0.96
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +2
Query: 131 LSELRSYFASHNTTREYIAHSSKVHSVGWSCDGRKLASGS 250
L +LRSY H R +++H+ V +VG+ G + SGS
Sbjct: 65 LFDLRSY-NPHIPVRNFVSHTKNVMAVGFQYTGHMMYSGS 103
Score = 27.1 bits (57), Expect = 9.0
Identities = 19/57 (33%), Positives = 28/57 (49%)
Frame = +1
Query: 256 KSVAIFNLERSRLSQDFIFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHK 426
K+V I+NL+ +L + + GH V C + L TAS D + R W R+ K
Sbjct: 239 KTVKIWNLDGFKLEK--VLTGHERWVWD-CDFSMDGEYLVTASSDTTARLWSMRAGK 292
>At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1218
Score = 30.3 bits (65), Expect = 0.96
Identities = 13/51 (25%), Positives = 27/51 (52%)
Frame = +1
Query: 256 KSVAIFNLERSRLSQDFIFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXW 408
+ V ++ + ++ + +GH +V + +HA ++S S DKS+R W
Sbjct: 226 RQVKLWRMNETKAWEVDTLRGHMNNVSSVMFHAKQDIIVSN-SEDKSIRVW 275
>At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1216
Score = 30.3 bits (65), Expect = 0.96
Identities = 13/51 (25%), Positives = 27/51 (52%)
Frame = +1
Query: 256 KSVAIFNLERSRLSQDFIFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXW 408
+ V ++ + ++ + +GH +V + +HA ++S S DKS+R W
Sbjct: 226 RQVKLWRMNETKAWEVDTLRGHMNNVSSVMFHAKQDIIVSN-SEDKSIRVW 275
>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
similarity to unknown protein (ref|NP_005638.1)
Length = 613
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +1
Query: 307 IFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXW 408
I +GHT V W S LL++ SGD + R W
Sbjct: 260 ILEGHTSEVCACAWSPSAS-LLASGSGDATARIW 292
Score = 28.7 bits (61), Expect = 2.9
Identities = 16/59 (27%), Positives = 22/59 (37%)
Frame = +1
Query: 310 FKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAATIPTKGXNLNIAWAPNG 486
F GH V L + + + S S DKS+ W + K T G + W G
Sbjct: 537 FNGHREPVYSLAFSPNGEYIAS-GSLDKSIHIWSIKEGKIVKTYTGNGGIFEVCWNKEG 594
>At1g80670.1 68414.m09466 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400) (1
weak); similar to Hypothetical RAE1-like
protein.(SP:Q38942) [Arabidopsis thaliana]; similar to
mRNA-associated protein mrnp 41 ((mRNA export protein)
(GB:AAC28126) (GI:1903456)(RAE1) (MRNP41) (SP:P78406)
[Homo sapiens]
Length = 349
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +1
Query: 319 HTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAAT--IPTKGXNLNI 468
H G + + W LL+T S DK+++ W TR T +P K L++
Sbjct: 113 HEGPIAAMAWIPGM-NLLATGSWDKTLKYWDTRQQNPVHTQQLPDKCYTLSV 163
>At5g27945.1 68418.m03364 transducin family protein / WD-40 repeat
family protein fizzy-related (FZR); contains 6 WD-40
repeats (PF00400); WD-repeat protein,
carrot,(gi:2253631) PIR:T14352
Length = 428
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Frame = +1
Query: 310 FKGHTGSVDQLCWHASXPXLLSTAS--GDKSVRXWXTRSHKXAATIPTKGXNLNIAWA 477
F+ HT +V L W LL+T GD + W T + ++ T ++ W+
Sbjct: 280 FEEHTAAVRALAWCPFQASLLATGGGVGDGKINFWNTHTGACLNSVETGSQVCSLLWS 337
Score = 29.1 bits (62), Expect = 2.2
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 179 YIAHSSKVHSVGWSCDGRKLASG 247
Y+ H+ +V + WS G+KLASG
Sbjct: 232 YVGHTEEVCGLKWSESGKKLASG 254
>At4g35050.1 68417.m04974 WD-40 repeat protein (MSI3) contains 5
WD-40 repeats (PF0400); identical to WD-40 repeat
protein MSI3 (SP:O22469) [Arabidopsis thaliana]
Length = 424
Score = 29.5 bits (63), Expect = 1.7
Identities = 9/53 (16%), Positives = 23/53 (43%)
Frame = +1
Query: 307 IFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAATIPTKGXNLN 465
+++GH ++ + WH + +A D + W R+++ + +N
Sbjct: 213 VYEGHQSIIEDVAWHMKNENIFGSAGDDCQLVIWDLRTNQMQHQVKVHEREIN 265
Score = 29.1 bits (62), Expect = 2.2
Identities = 9/35 (25%), Positives = 17/35 (48%)
Frame = +1
Query: 304 FIFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXW 408
F GH + W+ P ++S+ + D S++ W
Sbjct: 358 FSHGGHKAKISDFAWNKDEPWVISSVAEDNSLQVW 392
>At1g64610.2 68414.m07324 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 647
Score = 29.5 bits (63), Expect = 1.7
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +1
Query: 268 IFNLERSRLSQDFIFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXW 408
IF++ L + FKGH G + L W S L ++S D++VR W
Sbjct: 307 IFSISEKPLHE---FKGHIGEILDLSW--SEKGYLLSSSVDETVRLW 348
>At1g64610.1 68414.m07323 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 647
Score = 29.5 bits (63), Expect = 1.7
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +1
Query: 268 IFNLERSRLSQDFIFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXW 408
IF++ L + FKGH G + L W S L ++S D++VR W
Sbjct: 307 IFSISEKPLHE---FKGHIGEILDLSW--SEKGYLLSSSVDETVRLW 348
>At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 347
Score = 29.1 bits (62), Expect = 2.2
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Frame = +1
Query: 313 KGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXT-RSHKXAATIPTKGXNLNIAWAPNGQ 489
+GHTG V L W ++S AS D + W S K A + A++PNGQ
Sbjct: 62 QGHTGKVYSLDWTPERNRIVS-ASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPNGQ 120
Query: 490 H-HCGWGQGVXVPFSV 534
CG V FS+
Sbjct: 121 SVACGGLDSVCSIFSL 136
>At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 377
Score = 29.1 bits (62), Expect = 2.2
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Frame = +1
Query: 313 KGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXT-RSHKXAATIPTKGXNLNIAWAPNGQ 489
+GHTG V L W ++S AS D + W S K A + A++PNGQ
Sbjct: 62 QGHTGKVYSLDWTPERNRIVS-ASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPNGQ 120
Query: 490 H-HCGWGQGVXVPFSV 534
CG V FS+
Sbjct: 121 SVACGGLDSVCSIFSL 136
>At2g26060.1 68415.m03129 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to WD40-repeat containing protein Ciao 1
(SP:O76071) [Homo sapiens]
Length = 352
Score = 29.1 bits (62), Expect = 2.2
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 12/71 (16%)
Frame = +1
Query: 313 KGHTGSVDQLCW-----HASX-PXLLSTASGDKSVRXWXTRSHKXAATIPTKGXNL---- 462
+GHT V + W HA +L++ SGD +VR W S + T T
Sbjct: 17 EGHTDRVWSVAWNPVSSHADGVSPILASCSGDNTVRIWEQSSLSRSWTCKTVLEETHTRT 76
Query: 463 --NIAWAPNGQ 489
+ AW+P+GQ
Sbjct: 77 VRSCAWSPSGQ 87
Score = 28.3 bits (60), Expect = 3.9
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +1
Query: 256 KSVAIFN-LERSRLSQDFIFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXW 408
KSV I+ LE + + GHT V + WH + L S S D +++ W
Sbjct: 140 KSVWIWEVLEGNEYDCAAVLTGHTQDVKMVQWHPTMDVLFS-CSYDNTIKVW 190
>At4g03020.1 68417.m00410 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to L. erythrorhizon LEC14B, GenBank accession
number Q40153
Length = 493
Score = 28.7 bits (61), Expect = 2.9
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = +1
Query: 259 SVAIFNLERSRLSQDFIFKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTR 417
S+ +++LE +R+S + HT V+ +C+ L+ + S D + W R
Sbjct: 252 SIYVYDLEANRVSLRTV--AHTSDVNTVCFADESGNLILSGSDDNLCKVWDRR 302
>At1g10580.1 68414.m01192 transducin family protein / WD-40 repeat
family protein similar to splicing factor hPRP17
(gi|3283220); contains 7 WD-40 repeats (PF00400);similar
to ESTs emb|F15435 and dbj|AUO62661
Length = 573
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +1
Query: 310 FKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAATIPT 447
+ GH +V +C+ L TA DK+++ W T + + +T T
Sbjct: 322 YMGHAKAVRDICFSNDGSKFL-TAGYDKNIKYWDTETGQVISTFST 366
>At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG)
contains seven G-protein beta WD-40 repeats; beta
transducin-like protein, Podospora anserina, gb:L28125;
contains Pfam profiles PF04503: Single-stranded DNA
binding protein, SSDP; PF00400:WD domain, G-beta repeat;
identical to cDNA LEUNIG (LEUNIG) GI:11141604
Length = 931
Score = 28.3 bits (60), Expect = 3.9
Identities = 15/57 (26%), Positives = 24/57 (42%)
Frame = +1
Query: 310 FKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAATIPTKGXNLNIAWAP 480
F GH+ V L +H L+ + D +R W + + T KG + I + P
Sbjct: 732 FMGHSSMVTSLDFHPIKDDLICSCDNDNEIRYWSI--NNGSCTRVYKGGSTQIRFQP 786
>At1g71840.1 68414.m08302 transducin family protein / WD-40 repeat
family protein contains Pfam profile:PF00560 Leucine
Rich Repeat (4 copies); Pfam profile:PF00069 Eukaryotic
protein kinase domain; Pfam profile:PF00400 WD domain,
G-beta repeat (7 copies)
Length = 407
Score = 28.3 bits (60), Expect = 3.9
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +1
Query: 310 FKGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRSHKXAATIPTKGXNLN-IAWAPNG 486
F GH G + L + L++T GD W + AA +P +++ +A++ +G
Sbjct: 66 FTGHKGELYALACSPTDATLVATGGGDDKAFLWKIGNGDWAAELPGHKDSVSCLAFSYDG 125
Query: 487 Q 489
Q
Sbjct: 126 Q 126
>At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); rab11 binding protein, Bos
taurus, EMBL:AF117897
Length = 905
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +1
Query: 310 FKGHTGSVDQLCWHASXPXLLSTASGDKSVRXW 408
F GH V L W S LL ++S DK+VR W
Sbjct: 515 FTGHLDDVLDLSWSRSQ--LLLSSSMDKTVRLW 545
>At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similiar to rab11 binding
protein (GI:4512103) [Bos taurus]
Length = 903
Score = 27.9 bits (59), Expect = 5.1
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 313 KGHTGSVDQLCWHASXPXLLSTASGDKSVRXW 408
KGH ++ L W S LL ++S DK+VR W
Sbjct: 503 KGHLDAILDLSWSKSQ--LLLSSSMDKTVRLW 532
>At5g63010.1 68418.m07905 WD-40 repeat family protein contains 4
WD-40 repeats (PF00400);low similarity to
photomorphogenesis repressor (COP1) GI:2702280
[Arabidopsis thaliana] and COP1 GI:11127996 [Ipomoea
nil]
Length = 343
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 313 KGHTGSVDQLCWHASXPXLLSTASGDKSVRXWXTRS 420
K HT V + + S P + T S D+++R W TRS
Sbjct: 207 KVHTMGVCCISSNPSDPYSIFTGSYDETLRVWDTRS 242
>At5g19920.1 68418.m02370 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
related to TipD protein (SP:O15736, PIR:T08602)
[Dictyostelium discoideum]; related to WD-repeat protein
RBAP1 (GI:9716495) [Zea mays]
Length = 656
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +1
Query: 262 VAIFNLERSRLSQDFIFKGHTGSVDQLCWHASXPXLLSTAS 384
+ IF++ + S K H V + WH+S P L+S +S
Sbjct: 606 IHIFDIRYNAPSPSLSMKAHKKRVFKAEWHSSYPLLVSISS 646
>At4g04940.1 68417.m00718 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats
Length = 910
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 310 FKGHTGSVDQLCWHASXPXLLSTASGDKSVRXW 408
F+GHT + LC+ ++S +S D S+R W
Sbjct: 553 FRGHTDRITDLCFSEDGKWVIS-SSMDGSLRIW 584
>At3g18140.1 68416.m02306 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to Pop3 (GP:3434986) [Schizosaccharomyces pombe]
Length = 305
Score = 27.1 bits (57), Expect = 9.0
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 179 YIAHSSKVHSVGWSCDGRKLASGS 250
Y +H++ V +VG+ CD + + SGS
Sbjct: 74 YDSHTNNVMAVGFQCDAKWMYSGS 97
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,468,900
Number of Sequences: 28952
Number of extensions: 218183
Number of successful extensions: 666
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -