Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060086.seq
(572 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 45 9e-06
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git... 39 5e-04
SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces p... 38 8e-04
SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc... 36 0.003
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ... 35 0.007
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc... 35 0.010
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc... 34 0.013
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 33 0.022
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 33 0.039
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 32 0.069
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 31 0.091
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo... 31 0.091
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy... 31 0.091
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 31 0.091
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 31 0.12
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 31 0.12
SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces p... 31 0.12
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 31 0.12
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ... 31 0.16
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom... 30 0.21
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa... 30 0.28
SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||... 29 0.48
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 29 0.64
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 29 0.64
SPAC806.02c |||Par A family ATPase iron cluster assembly protein... 28 0.84
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ... 28 0.84
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1... 28 0.84
SPCC584.14 |mug160||conserved eukaryotic protein|Schizosaccharom... 28 0.84
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 28 1.1
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 28 1.1
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 28 1.1
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha... 27 1.5
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 27 2.0
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po... 27 2.0
SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces pom... 27 2.0
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 27 2.0
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb... 27 2.6
SPBC17D11.08 |||WD repeat protein, human WDR68 family|Schizosacc... 27 2.6
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 26 3.4
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 26 3.4
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc... 26 3.4
SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces pombe... 26 3.4
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb... 26 4.5
SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharom... 26 4.5
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc... 25 6.0
SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyce... 25 6.0
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb... 25 7.9
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 7.9
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 25 7.9
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 44.8 bits (101), Expect = 9e-06
Identities = 18/40 (45%), Positives = 24/40 (60%)
Frame = +1
Query: 301 DFIFKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRS 420
+F+ GHT V + WH +PD+L+T D SV WD RS
Sbjct: 315 EFMLHGHTRAVTDMNWHRQNPDVLATCSIDSSVHCWDLRS 354
>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
Git5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 305
Score = 39.1 bits (87), Expect = 5e-04
Identities = 19/63 (30%), Positives = 34/63 (53%)
Frame = +1
Query: 256 KSVAIFNLERSRLSQDFIFKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKCAA 435
K+ +++E+++ + KGH + L + S+P+L T DK ++WD R+ C A
Sbjct: 127 KTCMFWDIEQAKAIS--VLKGHEMDIVSLDFLPSNPNLFVTGGCDKLAKLWDLRAAYCCA 184
Query: 436 TIP 444
T P
Sbjct: 185 TFP 187
Score = 25.0 bits (52), Expect = 7.9
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = +1
Query: 316 GHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKCAATI 441
GH G V C + LL T GDK+ WD K + +
Sbjct: 104 GHAGFVS-CCKYVDDGHLL-TGSGDKTCMFWDIEQAKAISVL 143
>SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 309
Score = 38.3 bits (85), Expect = 8e-04
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = +1
Query: 259 SVAIFNLERS--RLSQDFIFKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKCA 432
SV ++N +R + + + +G+ G V+QL W +H D L K +R WD RS K
Sbjct: 47 SVLVWNSDRLDFKFTTELGNRGY-GLVEQLVWDPTHSDRLMAVYAGKMIRFWDFRSAKPI 105
Query: 433 ATI 441
A I
Sbjct: 106 AEI 108
Score = 28.7 bits (61), Expect = 0.64
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +2
Query: 455 ENINIAWXPNGQHHXGREKGXLVSFIDTKTYKVV 556
ENI W P+G + + ++SFID + +++
Sbjct: 113 ENIYATWSPSGNYCCASSRDDMLSFIDARERRIM 146
>SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 340
Score = 36.3 bits (80), Expect = 0.003
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +1
Query: 313 KGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKCAATIPTK 450
KGH G V+ L +LL++ D ++++WD+RS C TI K
Sbjct: 132 KGHAGVVNALDVLKVGSELLTSVSDDCTMKVWDSRSKDCIKTIEEK 177
>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 35.1 bits (77), Expect = 0.007
Identities = 19/61 (31%), Positives = 31/61 (50%)
Frame = +1
Query: 259 SVAIFNLERSRLSQDFIFKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKCAAT 438
S+ ++N S +++ GH V + WH S LL++ D V+ WD R+ C AT
Sbjct: 187 SLKVWNFHMS--TEELKLTGHGWDVKTVDWHPSK-GLLASGSKDNLVKFWDPRTGTCIAT 243
Query: 439 I 441
+
Sbjct: 244 L 244
Score = 31.1 bits (67), Expect = 0.12
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 307 IFKGHTGXVDQLCWHASHPDLLSTXXGDKSV 399
+ +GH V+ + WH +P+LL+T D SV
Sbjct: 287 VLRGHEKDVNCVTWHPLYPNLLTTGGSDGSV 317
>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 490
Score = 34.7 bits (76), Expect = 0.010
Identities = 20/63 (31%), Positives = 31/63 (49%)
Frame = +1
Query: 262 VAIFNLERSRLSQDFIFKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKCAATI 441
V +F+ R+ S + GHT V + W S L++ D SVR+W++ H AA +
Sbjct: 417 VVVFDTTRNCSSSAMLTGGHTKDVTAVDW--SSEGQLASISDDGSVRVWNSSLHGSAANL 474
Query: 442 PTK 450
K
Sbjct: 475 REK 477
>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 430
Score = 34.3 bits (75), Expect = 0.013
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +1
Query: 307 IFKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRS 420
+ KGHT LCW+ + P L+T D+ + +WD ++
Sbjct: 177 VLKGHTAEGFGLCWNPNLPGNLATGAEDQVICLWDVQT 214
Score = 27.5 bits (58), Expect = 1.5
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 319 HTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTR 417
HT V+ + +H H LL++ D +++I DTR
Sbjct: 234 HTDIVNDVQFHPQHEALLASVSDDCTLQIHDTR 266
Score = 27.5 bits (58), Expect = 1.5
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +1
Query: 256 KSVAIFNLERSRLSQDFIFKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWD 411
K+VA+++L R+ + +GH V L W +L++ D+ V IWD
Sbjct: 304 KTVALWDL-RNPYQRLHTLEGHEDEVYGLEWSPHDEPILASSSTDRRVCIWD 354
Score = 27.1 bits (57), Expect = 2.0
Identities = 10/38 (26%), Positives = 22/38 (57%)
Frame = +1
Query: 307 IFKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRS 420
+ + H+ ++ + + + LL+T DK+V +WD R+
Sbjct: 276 VIQAHSKAINAVAINPFNDYLLATASADKTVALWDLRN 313
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 33.5 bits (73), Expect = 0.022
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 310 FKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRS 420
F HT V+ L W S ++ S+ D + RIWD R+
Sbjct: 287 FLSHTAAVEDLQWSPSEKNVFSSCSCDGTFRIWDVRN 323
Score = 32.7 bits (71), Expect = 0.039
Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +1
Query: 268 IFNLERSRLSQDFIFKGHTGX-VDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKCAATIP 444
I+++ + + H G V+ L W+ P+LL+T + +WD RS K ++++
Sbjct: 318 IWDVRNKQKTSALTVNAHPGVDVNVLSWNTRVPNLLATGADNGVWSVWDLRSLKSSSSVA 377
Query: 445 TKGGKHKY 468
T K+
Sbjct: 378 TPVASFKW 385
Score = 27.9 bits (59), Expect = 1.1
Identities = 8/34 (23%), Positives = 15/34 (44%)
Frame = +1
Query: 310 FKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWD 411
FK H + + WH + ++ D + +WD
Sbjct: 383 FKWHRAPIYSIEWHPNEDSVIGVVGADNQISLWD 416
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 32.7 bits (71), Expect = 0.039
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 280 ERSRL-SQDFIFKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIW 408
ER +L Q +F+GHT V W+ H +L++ D + IW
Sbjct: 66 ERGKLPDQVNLFRGHTAAVLDTDWNPFHDQVLASGGDDSKIMIW 109
Score = 28.3 bits (60), Expect = 0.84
Identities = 9/33 (27%), Positives = 21/33 (63%)
Frame = +1
Query: 313 KGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWD 411
KGH+ V + +H + ++L++ D ++++WD
Sbjct: 131 KGHSRKVGLVQYHPTAANVLASSSADNTIKLWD 163
Score = 25.0 bits (52), Expect = 7.9
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 370 LSTXXGDKSVRIWDTRSHK 426
L T DK VR+WD R+ K
Sbjct: 191 LVTTSRDKKVRVWDPRTDK 209
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 31.9 bits (69), Expect = 0.069
Identities = 16/62 (25%), Positives = 34/62 (54%)
Frame = +1
Query: 256 KSVAIFNLERSRLSQDFIFKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKCAA 435
+++ I+N++ + Q +GHTG + +L + + ++S D V++W S +C A
Sbjct: 529 RTIRIWNVDTQQCVQTL--EGHTGAILKLIYISQGTQVVSAA-ADGLVKVWSLSSGECVA 585
Query: 436 TI 441
T+
Sbjct: 586 TL 587
Score = 31.5 bits (68), Expect = 0.091
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +1
Query: 310 FKGHTGXVDQLCWHASHPD--LLSTXXGDKSVRIWDTRSHKCAA 435
F+GH G + LC+ H + +L++ D VR+WD S + A
Sbjct: 141 FRGHGGVISALCF-GKHQNTWVLASGADDSRVRLWDLNSSRSMA 183
Score = 31.5 bits (68), Expect = 0.091
Identities = 18/61 (29%), Positives = 32/61 (52%)
Frame = +1
Query: 262 VAIFNLERSRLSQDFIFKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKCAATI 441
V +++L SR +F+GH+ + L + + LLS DK+V++W+ + TI
Sbjct: 171 VRLWDLNSSRSMA--VFEGHSSVIRGLTFEPTGSFLLSGSR-DKTVQVWNIKKRSAVRTI 227
Query: 442 P 444
P
Sbjct: 228 P 228
Score = 27.9 bits (59), Expect = 1.1
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +1
Query: 307 IFKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKCAATI 441
+ +GH V C L++ GD+++RIW+ + +C T+
Sbjct: 502 VLRGHRRGV-WACSFNPFSRQLASGSGDRTIRIWNVDTQQCVQTL 545
>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 558
Score = 31.5 bits (68), Expect = 0.091
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +1
Query: 310 FKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKC 429
F+GH + L + LST DK++++WDT KC
Sbjct: 306 FQGHARPIRDLSFSQDGRSFLSTSF-DKTIKLWDTELGKC 344
>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 651
Score = 31.5 bits (68), Expect = 0.091
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = +1
Query: 310 FKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKCAATIP 444
F GHT + L + ++H L + D SVRIWD RS IP
Sbjct: 532 FIGHTAPISSLQFDSNH---LYSGSYDNSVRIWDLRSGSPINIIP 573
Score = 30.3 bits (65), Expect = 0.21
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +1
Query: 307 IFKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKCAATI 441
+ HT V L S D+L T DK+VR WD + +C T+
Sbjct: 430 VLTSHTAPVTALA--LSSDDVLITGADDKTVRQWDIVTGRCIQTL 472
Score = 25.8 bits (54), Expect = 4.5
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +1
Query: 310 FKGHTGXVDQLCWHASHP-DLLSTXXGDKSVRIWD 411
F+ H+ + L + SHP L+T DK+V++WD
Sbjct: 328 FQAHSEYITSLDF--SHPFGTLATASTDKTVKVWD 360
Score = 25.0 bits (52), Expect = 7.9
Identities = 15/58 (25%), Positives = 29/58 (50%)
Frame = +2
Query: 95 KDSKHSQAPIEDLSELRSYFASHNTTREYIAHSSKVHSVGWSCDGRKLASGSFVKALQ 268
++S S+AP S + + N +++ AHS + S+ +S LA+ S K ++
Sbjct: 300 QNSAFSKAPENTESSVNQNYIVGNLVKQFQAHSEYITSLDFSHPFGTLATASTDKTVK 357
>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 314
Score = 31.5 bits (68), Expect = 0.091
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +1
Query: 262 VAIFNLERSRLSQDFIFKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRS 420
V ++++ S F+GHT V + +H L+T D +V++WD R+
Sbjct: 63 VRLYDINTSSQMPLMTFEGHTNNVTAIAFHCD-GKWLATSSEDGTVKVWDMRA 114
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 31.5 bits (68), Expect = 0.091
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +1
Query: 259 SVAIFNLERSRLSQDFIFKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKC 429
+V I+N++ L F GHT + + W + S+ DK++RIWD + KC
Sbjct: 250 TVRIWNVKLRTLL--FTLSGHTAPITCVRWGGQNWIYSSSY--DKTIRIWDAKDGKC 302
Score = 29.9 bits (64), Expect = 0.28
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +2
Query: 188 HSSKVHSVGWSCDGRKLASGSFVKALQ 268
H +V +V WS DG+++ASG KA++
Sbjct: 472 HEDQVFAVDWSPDGQRVASGGADKAVR 498
Score = 28.7 bits (61), Expect = 0.64
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Frame = +1
Query: 319 HTGXVDQLCWHASH------PDLLSTXXGDKSVRIWDTR 417
HT + LCW H P LL++ D +VRIW+ +
Sbjct: 219 HTKPIMALCWQPLHLAPDSGPYLLASGSKDNTVRIWNVK 257
Score = 26.6 bits (56), Expect = 2.6
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Frame = +1
Query: 349 HASH-PD--LLSTXXGDKSVRIWDTRSHKCAATI 441
HAS PD ++T D SVR+WD ++ K AT+
Sbjct: 394 HASFSPDGRCIATASFDSSVRLWDGKTGKFLATL 427
Score = 25.8 bits (54), Expect = 4.5
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +1
Query: 316 GHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKCAATI 441
GH G + + S L T GD + R+WD + AT+
Sbjct: 132 GHDGTIISAQFSPSTSSRLVTGSGDFTARLWDCDTQTPIATM 173
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 31.1 bits (67), Expect = 0.12
Identities = 18/60 (30%), Positives = 31/60 (51%)
Frame = +1
Query: 262 VAIFNLERSRLSQDFIFKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKCAATI 441
V ++N + +L F GH V +H +P +LS D+++RIW+ +S C A +
Sbjct: 77 VNVWNYKSRKLL--FSLCGHMDYVRVCTFHHEYPWILSCSD-DQTIRIWNWQSRNCIAIL 133
Score = 28.7 bits (61), Expect = 0.64
Identities = 14/59 (23%), Positives = 27/59 (45%)
Frame = +1
Query: 262 VAIFNLERSRLSQDFIFKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKCAAT 438
V ++ + S+ + +GH V +H H +L+ + DK++R+WD T
Sbjct: 236 VKLWRMTASKAWEVDTCRGHFNNVSCCLFHP-HQELILSASEDKTIRVWDLNRRTAVQT 293
Score = 26.2 bits (55), Expect = 3.4
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 307 IFKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWD 411
I GH+ V +H S DL+ + D++VR+WD
Sbjct: 132 ILTGHSHYVMCAAFHPSE-DLIVSASLDQTVRVWD 165
>SPAC343.17c |||WD repeat protein, human WDR70
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 576
Score = 31.1 bits (67), Expect = 0.12
Identities = 12/38 (31%), Positives = 15/38 (39%)
Frame = +1
Query: 313 KGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHK 426
KGH + CW + T D + RIWD K
Sbjct: 194 KGHIAEITDGCWQPDSSQIFLTTGYDSTARIWDVNRTK 231
>SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 352
Score = 31.1 bits (67), Expect = 0.12
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 8/72 (11%)
Frame = +1
Query: 265 AIFNLERSRLSQDFIFK------GHTGXVDQLCWHASHPDL--LSTXXGDKSVRIWDTRS 420
AI N++ SQ+F F+ G++ V + A HP ST D + WD S
Sbjct: 226 AIQNIDEKNASQNFSFRCHRNQAGNSADVYSVNSIAFHPQYGTFSTAGSDGTFSFWDKDS 285
Query: 421 HKCAATIPTKGG 456
H+ + P GG
Sbjct: 286 HQRLKSYPNVGG 297
Score = 30.3 bits (65), Expect = 0.21
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +2
Query: 188 HSSKVHSVGWSCDGRKLASGSFVKA 262
H V SV WS DG K+ASGS K+
Sbjct: 73 HQGPVLSVNWSRDGTKVASGSVDKS 97
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 31.1 bits (67), Expect = 0.12
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +1
Query: 316 GHTGXVDQLCWHASHPDLLSTXXGDKSVRIWD 411
GH G V L +++S LL++ DK+VRIWD
Sbjct: 465 GHEGPVSSLSFNSSG-SLLASGSWDKTVRIWD 495
Score = 27.5 bits (58), Expect = 1.5
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = +2
Query: 152 FASHNTTREYIAHSSKVHSVGWSCDGRKLASGS 250
FA REY H + S+ WS D R S S
Sbjct: 133 FAPFVLHREYTGHFDDIVSISWSADSRFFISTS 165
>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 314
Score = 30.7 bits (66), Expect = 0.16
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 313 KGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWD 411
+GH+G V L +PD+L + DKS+ +W+
Sbjct: 12 EGHSGWVTSLSTAPENPDILLSGSRDKSIILWN 44
Score = 28.7 bits (61), Expect = 0.64
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +2
Query: 170 TREYIAHSSKVHSVGWSCDGRKLASGSFVKALQ 268
T +++ H+S V SV S D R++ SGS K ++
Sbjct: 98 THQFVGHTSDVLSVSISPDNRQVVSGSRDKTIK 130
>SPAC23H3.05c |swd1||COMPASS complex subunit
Swd1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 398
Score = 30.3 bits (65), Expect = 0.21
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +1
Query: 247 VIRKSVAIFNLERSRLSQDFIFKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTR 417
++ SV I++L +S+ + GHT + +CW + LL+ K + +WD R
Sbjct: 43 LVNGSVVIWDLSTFSVSR--VLTGHTRAIQSVCWSSCDRFLLTASRDWKCI-LWDLR 96
>SPBC215.15 |sec13||COPII-coated vesicle component
Sec13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 29.9 bits (64), Expect = 0.28
Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +1
Query: 256 KSVAIFNLERSRLSQDFIFKGHTGXVDQLCW-HASHPDLLSTXXGDKSVRIW 408
+++ +F++E ++ + +GH+G V QL W H +L++ D V +W
Sbjct: 31 QTIKVFSIENNQQTLLETLRGHSGPVWQLGWAHPKFGTILASASYDGHVIVW 82
>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 29.1 bits (62), Expect = 0.48
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 316 GHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTR 417
GHTG V + W + +L++ D + R+WD R
Sbjct: 187 GHTGNVLAVDWCPKNEFVLASGSADGTCRLWDIR 220
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 28.7 bits (61), Expect = 0.64
Identities = 12/51 (23%), Positives = 26/51 (50%)
Frame = +1
Query: 304 FIFKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKCAATIPTKGG 456
++F GH + L + + ++S GD++ R+WD + +C + + G
Sbjct: 396 YVFSGHEQDIYSLDFSHNGRFIVS-GSGDRTARLWDVETGQCILKLEIENG 445
Score = 25.4 bits (53), Expect = 6.0
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 188 HSSKVHSVGWSCDGRKLASGS 250
H + V SV +S DGR+ ASGS
Sbjct: 579 HKNSVISVCFSPDGRQFASGS 599
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 28.7 bits (61), Expect = 0.64
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +2
Query: 98 DSKHSQAPIEDLSELRSY-FASHNTTREYIAHSSKVHSVGWSCDGRKLASGS 250
D K+ +ED ++R + A R H +++S+ +S DG+ L SGS
Sbjct: 345 DGKYLATGVED-QQIRIWDIAQKRVYRLLTGHEQEIYSLDFSKDGKTLVSGS 395
Score = 27.9 bits (59), Expect = 1.1
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 140 LRSYFASHNTTREYIAHSSKVHSVGWSCDGRKLASGS 250
+R + +S + H V+SV +S DG+ L SGS
Sbjct: 441 IRIWTSSGTLVEQLHGHEESVYSVAFSPDGKYLVSGS 477
>SPAC806.02c |||Par A family ATPase iron cluster assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 608
Score = 28.3 bits (60), Expect = 0.84
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 316 GHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKCAATI 441
GHTG + + H P L +T DKSVRI+++ ++ I
Sbjct: 288 GHTGRLWSVAAHPMLP-LFATSSQDKSVRIYNSNTYNLVHVI 328
Score = 26.2 bits (55), Expect = 3.4
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 188 HSSKVHSVGWSCDGRKLASGSFVKAL 265
H ++V + WSC+G LA+ S K++
Sbjct: 377 HENEVKCIAWSCNGNYLATCSRDKSV 402
>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 28.3 bits (60), Expect = 0.84
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +1
Query: 298 QDFIFKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKCAATIPTK 450
+ + +GH + + +++S LLS D+S++IWD S C TK
Sbjct: 93 ETLVLEGHEHNIPCITFNSSGTLLLSGSI-DRSLQIWDITSLSCLCKFYTK 142
>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
Prw1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 431
Score = 28.3 bits (60), Expect = 0.84
Identities = 9/34 (26%), Positives = 21/34 (61%)
Frame = +1
Query: 319 HTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRS 420
H+G + + ++ + +L+T DK++ +WD R+
Sbjct: 280 HSGPIHSVAFNPHNDFILATCSTDKTIALWDLRN 313
>SPCC584.14 |mug160||conserved eukaryotic
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 431
Score = 28.3 bits (60), Expect = 0.84
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -3
Query: 261 AFTNDPEASFLPSQDQPTECTLDECAMYSRVVLCDAK 151
AF D E FLP P +CT E A++S + + D +
Sbjct: 86 AFLMDNEDFFLPVPMNPAQCTALEIALWSLIRVDDQR 122
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 27.9 bits (59), Expect = 1.1
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 364 DLLSTXXGDKSVRIWDTRSHKC 429
D L T D++VR+WD R+ +C
Sbjct: 457 DTLVTGSTDRTVRVWDLRTGEC 478
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 27.9 bits (59), Expect = 1.1
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 316 GHTGXVDQLCWHASHPDLLSTXXGDKSVRIWD 411
GH + Q+ W A+ L++ DK++RIWD
Sbjct: 94 GHYRGISQVKW-ATGSKYLASASDDKTIRIWD 124
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 27.9 bits (59), Expect = 1.1
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 370 LSTXXGDKSVRIWDTRSHKCAATIP 444
L+T D +V+IWD R A TIP
Sbjct: 364 LATSSADDTVKIWDLRKVSLAHTIP 388
>SPBC609.03 |||WD repeat protein, human IQWD1
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 27.5 bits (58), Expect = 1.5
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 173 REYIAHSSKVHSVGWSCDGRKLASGS 250
+E H+ V+++ WS DG L SGS
Sbjct: 39 KELTGHTGCVNTLDWSADGEFLLSGS 64
Score = 27.1 bits (57), Expect = 2.0
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 316 GHTGXVDQLCWHASHPDLLSTXXGDKSVRIWD 411
GHTG V+ L W A LLS D + +WD
Sbjct: 43 GHTGCVNTLDWSADGEFLLS-GSDDTRLIVWD 73
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 27.1 bits (57), Expect = 2.0
Identities = 16/67 (23%), Positives = 30/67 (44%)
Frame = +1
Query: 256 KSVAIFNLERSRLSQDFIFKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKCAA 435
KS+ +++L ++ +GH V L + L + D ++RIWD + K
Sbjct: 569 KSIRVWDLSTGTCK--YVLEGHDAFVTLLNVFQNR---LISGSADSTIRIWDLNTGKPLM 623
Query: 436 TIPTKGG 456
+P+ G
Sbjct: 624 VLPSNSG 630
>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 27.1 bits (57), Expect = 2.0
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +1
Query: 301 DFIFK--GHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKCAATIPT 447
+F+++ GHT V L + + L+++ D+++RIW + T+PT
Sbjct: 206 EFLYELHGHTSFVYSLTY-IHNQQLIASCGEDRTIRIWKGKECLQCITLPT 255
>SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 308
Score = 27.1 bits (57), Expect = 2.0
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +1
Query: 307 IFKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKC 429
+ GH V + S DLL+T D + RI+D H C
Sbjct: 228 VLSGHQLAVRSIKSSNSAHDLLATASYDMTSRIFDPEQHSC 268
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 27.1 bits (57), Expect = 2.0
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 188 HSSKVHSVGWSCDGRKLASG 247
HSS+V + W DG +LASG
Sbjct: 303 HSSEVCGLAWRSDGLQLASG 322
>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 605
Score = 26.6 bits (56), Expect = 2.6
Identities = 16/61 (26%), Positives = 32/61 (52%)
Frame = +1
Query: 259 SVAIFNLERSRLSQDFIFKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKCAAT 438
++ ++NL + Q + +GH+ V C L+S DK++RIW+ R+ +C +
Sbjct: 294 TIRLWNL--ATFQQVALLEGHSSGVT--CLQFDQCKLISGSM-DKTIRIWNYRTSECISI 348
Query: 439 I 441
+
Sbjct: 349 L 349
>SPBC17D11.08 |||WD repeat protein, human WDR68
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 435
Score = 26.6 bits (56), Expect = 2.6
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +1
Query: 313 KGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWD 411
+GH G V+ + W L+T D V +WD
Sbjct: 312 RGHKGDVNAVKWMPGSKSKLATCGDDCVVSLWD 344
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2244
Score = 26.2 bits (55), Expect = 3.4
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +2
Query: 71 FYMITKAMKDSKHSQAPIEDLSELRSYF--ASHNTTREYIAHSSKV 202
FY + MKD K +ED S L+ Y A H+ + E + + V
Sbjct: 46 FYSVNGEMKDYKLMALELEDKSVLQGYSFGADHSVSGELVFQTGMV 91
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 26.2 bits (55), Expect = 3.4
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +1
Query: 319 HTGXVDQLCWHASHPDLLSTXXG-DKSVRIWDTRSHK 426
H G V LC + S + G DK++RIWD+ S+K
Sbjct: 220 HNGVV--LCVNYSPNGVFLASCGRDKTIRIWDSTSNK 254
Score = 25.4 bits (53), Expect = 6.0
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +1
Query: 310 FKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKCAATIPTKG 453
F H+ V +L + HP + T D +++WD + + ++TI +G
Sbjct: 130 FNEHSRAVHKLDISSFHPSYVLTASQDGLIKLWDYK--ESSSTITFRG 175
>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 26.2 bits (55), Expect = 3.4
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +1
Query: 313 KGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKCAATIP 444
+ H+G D + W +S+ ++ + IWDT+SH+ +P
Sbjct: 228 ENHSGVTD-ISW-SSNGMYIAASFKKGGILIWDTQSHEVVVELP 269
>SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 26.2 bits (55), Expect = 3.4
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +1
Query: 313 KGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDT 414
+ H G + L + S P ++T D+ V++W+T
Sbjct: 380 QAHDGPISCLSVNPSVPSFVATGSTDRVVKLWNT 413
Score = 25.8 bits (54), Expect = 4.5
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 310 FKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTR 417
F H+ V L W++ P +L + DK+ +I D R
Sbjct: 293 FTYHSDKVSCLDWYSKAPSVLLSGSYDKTAKIADLR 328
>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 494
Score = 25.8 bits (54), Expect = 4.5
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +1
Query: 256 KSVAIFNLERSRLSQDFIFKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTR 417
K+V +++L + D GH V W ++ L + D ++R+WDTR
Sbjct: 146 KTVKVWDLSTGAVQYDL--SGHEDYVRTASWMSA--TRLVSGGYDGTIRLWDTR 195
>SPAC890.04c |||ribosome biogenesis protein Ytm1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 440
Score = 25.8 bits (54), Expect = 4.5
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = +1
Query: 316 GHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRS 420
GH V L +P + ++ D + R+WD R+
Sbjct: 353 GHKNLVSGLSASPENPYMFASVSHDNTCRVWDVRA 387
>SPAC31A2.14 |||WD repeat protein, human WRDR48
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 25.4 bits (53), Expect = 6.0
Identities = 13/60 (21%), Positives = 28/60 (46%)
Frame = +1
Query: 250 IRKSVAIFNLERSRLSQDFIFKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKC 429
++K + +++ + D + GHT V + +L T D ++++W R+ KC
Sbjct: 194 LQKDIQLWDCVSKKRITDLV--GHTDNVRDILISDDGRTIL-TASSDATIKLWSLRAQKC 250
>SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 398
Score = 25.4 bits (53), Expect = 6.0
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +2
Query: 98 DSKHSQAPIEDLSELRSYFASHNTTREYIAHSSKVHSVGWSCDGRKL 238
DS + PI+D L + + H+ T+ HS + V S D K+
Sbjct: 187 DSTFAPPPIQDALVLGADYVVHSATKYLAGHSDVLAGVTASKDRSKI 233
>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1073
Score = 25.0 bits (52), Expect = 7.9
Identities = 13/63 (20%), Positives = 27/63 (42%)
Frame = +1
Query: 250 IRKSVAIFNLERSRLSQDFIFKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKC 429
+R SVA+F + S + + + + C++ S LL + D+ + + C
Sbjct: 940 LRDSVAVFQYDSENNSLNLVCSDTSSRLGIDCFYISQKKLLFSCDKDRLLTCFKVEGEVC 999
Query: 430 AAT 438
+T
Sbjct: 1000 TST 1002
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.0 bits (52), Expect = 7.9
Identities = 13/64 (20%), Positives = 25/64 (39%)
Frame = +1
Query: 262 VAIFNLERSRLSQDFIFKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKCAATI 441
+ ++L + + Q+ I GH L W P L + D +W+ + + +
Sbjct: 241 ILTWDLRQPTVPQN-ILTGHQKAALSLSWCPEDPTFLLSSGKDGRAMVWNVETGESLGSF 299
Query: 442 PTKG 453
P G
Sbjct: 300 PRSG 303
>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 827
Score = 25.0 bits (52), Expect = 7.9
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +1
Query: 259 SVAIFNLERSRLSQDFIFKGHT-GXVDQLCWHASHPDLLSTXXGDKSVRIW 408
SVA+F L SRLSQ + F + +L H D+L++ S R++
Sbjct: 301 SVALFALFSSRLSQAYTFTNNALLCCHELGLHKDFSDVLTSHESRLSKRVF 351
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,153,098
Number of Sequences: 5004
Number of extensions: 40927
Number of successful extensions: 212
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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