Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060086.seq
(572 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g56130.1 68418.m07002 transducin family protein / WD-40 repea... 70 1e-12
At5g58230.1 68418.m07290 WD-40 repeat protein (MSI1) contains 6 ... 40 9e-04
At4g35370.1 68417.m05025 transducin family protein / WD-40 repea... 40 9e-04
At5g16750.1 68418.m01961 transducin family protein / WD-40 repea... 32 0.001
At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7 ... 39 0.002
At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7 ... 39 0.002
At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7 ... 39 0.002
At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7 ... 39 0.002
At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7 ... 39 0.002
At1g29260.1 68414.m03578 peroxisomal targeting signal type 2 rec... 39 0.002
At4g18900.1 68417.m02786 transducin family protein / WD-40 repea... 38 0.006
At5g10940.1 68418.m01269 transducin family protein / WD-40 repea... 37 0.008
At2g16780.1 68415.m01924 WD-40 repeat protein (MSI2) contains 5 ... 37 0.008
At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless... 37 0.011
At3g27640.1 68416.m03452 transducin family protein / WD-40 repea... 36 0.015
At5g14530.1 68418.m01703 transducin family protein / WD-40 repea... 36 0.025
At5g08390.1 68418.m00988 transducin family protein / WD-40 repea... 36 0.025
At2g47790.1 68415.m05965 transducin family protein / WD-40 repea... 35 0.034
At2g19540.1 68415.m02283 transducin family protein / WD-40 repea... 35 0.044
At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pf... 34 0.059
At5g13480.1 68418.m01554 WD-40 repeat family protein similar to ... 34 0.059
At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pf... 34 0.059
At5g64730.1 68418.m08140 transducin family protein / WD-40 repea... 34 0.077
At5g43920.1 68418.m05372 transducin family protein / WD-40 repea... 34 0.077
At4g18905.1 68417.m02787 transducin family protein / WD-40 repea... 34 0.077
At1g52730.2 68414.m05959 transducin family protein / WD-40 repea... 34 0.077
At1g52730.1 68414.m05958 transducin family protein / WD-40 repea... 34 0.077
At4g35050.1 68417.m04974 WD-40 repeat protein (MSI3) contains 5 ... 33 0.10
At3g15610.1 68416.m01980 transducin family protein / WD-40 repea... 33 0.10
At5g27570.1 68418.m03302 WD-40 repeat family protein contains 5 ... 33 0.14
At3g20740.1 68416.m02624 fertilization-independent endosperm pro... 33 0.14
At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha... 33 0.14
At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha... 33 0.14
At5g25150.1 68418.m02981 transducin family protein / WD-40 repea... 33 0.18
At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6 ... 33 0.18
At4g33270.1 68417.m04734 WD-40 repeat family protein contains 6 ... 33 0.18
At4g33260.1 68417.m04733 WD-40 repeat family protein contains 6 ... 33 0.18
At4g32990.1 68417.m04692 transducin family protein / WD-40 repea... 33 0.18
At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p... 33 0.18
At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG) co... 32 0.24
At5g26900.1 68418.m03208 WD-40 repeat family protein contains 5 ... 32 0.31
At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pf... 32 0.31
At2g19430.1 68415.m02267 transducin family protein / WD-40 repea... 32 0.31
At1g52360.1 68414.m05909 coatomer protein complex, subunit beta ... 32 0.31
At5g54200.1 68418.m06748 WD-40 repeat family protein contains Pf... 31 0.41
At5g27080.1 68418.m03231 WD-40 repeat family protein contains 5 ... 31 0.41
At3g15980.3 68416.m02022 coatomer protein complex, subunit beta ... 31 0.41
At3g15980.2 68416.m02021 coatomer protein complex, subunit beta ... 31 0.41
At3g15980.1 68416.m02020 coatomer protein complex, subunit beta ... 31 0.41
At5g27945.1 68418.m03364 transducin family protein / WD-40 repea... 31 0.55
At4g03020.1 68417.m00410 transducin family protein / WD-40 repea... 31 0.55
At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6 ... 31 0.55
At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1 p... 31 0.55
At2g40360.1 68415.m04977 transducin family protein / WD-40 repea... 31 0.72
At2g26060.1 68415.m03129 transducin family protein / WD-40 repea... 31 0.72
At1g64610.2 68414.m07324 WD-40 repeat family protein contains Pf... 31 0.72
At1g64610.1 68414.m07323 WD-40 repeat family protein contains Pf... 31 0.72
At5g21040.1 68418.m02503 F-box family protein / WD-40 repeat fam... 30 0.95
At4g02730.1 68417.m00372 transducin family protein / WD-40 repea... 30 0.95
At2g22040.1 68415.m02617 transducin family protein / WD-40 repea... 30 0.95
At5g54520.1 68418.m06788 WD-40 repeat family protein contains 5 ... 30 1.3
At4g28450.1 68417.m04071 transducin family protein / WD-40 repea... 30 1.3
At3g52030.1 68416.m05707 F-box family protein / WD-40 repeat fam... 30 1.3
At5g42010.1 68418.m05114 WD-40 repeat family protein contains Pf... 29 2.2
At4g04940.1 68417.m00718 transducin family protein / WD-40 repea... 29 2.2
At3g49660.1 68416.m05427 transducin family protein / WD-40 repea... 29 2.2
At2g43770.1 68415.m05441 transducin family protein / WD-40 repea... 29 2.2
At5g08560.1 68418.m01018 transducin family protein / WD-40 repea... 29 2.9
At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta... 29 2.9
At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta... 29 2.9
At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta... 29 2.9
At3g12460.1 68416.m01551 hypothetical protein 29 2.9
At5g63010.1 68418.m07905 WD-40 repeat family protein contains 4 ... 28 3.8
At5g56190.2 68418.m07011 WD-40 repeat family protein contains 3 ... 28 3.8
At5g56190.1 68418.m07010 WD-40 repeat family protein contains 3 ... 28 3.8
At5g18525.1 68418.m02190 WD-40 repeat family protein contains Pf... 28 3.8
At5g15900.1 68418.m01860 expressed protein several hypothetical ... 28 3.8
At3g44600.1 68416.m04794 peptidyl-prolyl cis-trans isomerase cyc... 28 3.8
At1g80670.1 68414.m09466 transducin family protein / WD-40 repea... 28 3.8
At1g10580.1 68414.m01192 transducin family protein / WD-40 repea... 28 3.8
At1g04140.2 68414.m00404 transducin family protein / WD-40 repea... 28 3.8
At1g04140.1 68414.m00403 transducin family protein / WD-40 repea... 28 3.8
At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1 pro... 28 5.1
At3g13340.1 68416.m01679 WD-40 repeat family protein contains Pf... 28 5.1
At1g18830.1 68414.m02345 transducin family protein / WD-40 repea... 28 5.1
At5g43930.1 68418.m05374 transducin family protein / WD-40 repea... 27 6.7
At3g63460.2 68416.m07146 WD-40 repeat family protein hypothetica... 27 6.7
At3g63460.1 68416.m07145 WD-40 repeat family protein hypothetica... 27 6.7
At3g18060.1 68416.m02297 transducin family protein / WD-40 repea... 27 6.7
At1g27840.1 68414.m03412 transducin family protein / WD-40 repea... 27 6.7
At1g19750.1 68414.m02469 transducin family protein / WD-40 repea... 27 6.7
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi... 27 8.9
At5g66240.2 68418.m08345 transducin family protein / WD-40 repea... 27 8.9
At5g66240.1 68418.m08344 transducin family protein / WD-40 repea... 27 8.9
At5g15550.1 68418.m01820 transducin family protein / WD-40 repea... 27 8.9
At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6 ... 27 8.9
At3g18140.1 68416.m02306 transducin family protein / WD-40 repea... 27 8.9
>At5g56130.1 68418.m07002 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to beta transducin-like protein HET-E2C*4
(GI:17225206) [Podospora anserina]
Length = 315
Score = 69.7 bits (163), Expect = 1e-12
Identities = 32/70 (45%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Frame = +1
Query: 250 IRKSVAIFNLERSRLSQ--DFIFKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSH 423
+ ++ I+N+E S+ D KGHT VDQLCW H DL++T GDKSVR+WD RS
Sbjct: 40 VDQTARIWNIEPHGHSKAKDLELKGHTDSVDQLCWDPKHSDLVATASGDKSVRLWDARSG 99
Query: 424 KCAATIPTKG 453
KC + G
Sbjct: 100 KCTQQVELSG 109
Score = 41.5 bits (93), Expect = 4e-04
Identities = 35/137 (25%), Positives = 61/137 (44%), Gaps = 3/137 (2%)
Frame = +2
Query: 170 TREYIAHSSKVHSVGWSCDGRKLASGSFVKALQY--LI*RGAD*VKILFSKA-TQAL*IN 340
+REY H KVHSV W+ +G KLASGS + + + G K L K T ++
Sbjct: 13 SREYQGHKKKVHSVAWNSNGTKLASGSVDQTARIWNIEPHGHSKAKDLELKGHTDSVDQL 72
Query: 341 SAGMRHILIS*VXRXETNLLGYGIHDHTNARRQSQPKVENINIAWXPNGQHHXGREKGXL 520
+H + + ++ + +Q + ENINI + P+G H +
Sbjct: 73 CWDPKHSDLVATASGDKSVRLWDARS-GKCTQQVELSGENINITYKPDGTHVAVGNRDDE 131
Query: 521 VSFIDTKTYKVVTEEQF 571
++ +D + +K + +F
Sbjct: 132 LTILDVRKFKPLHRRKF 148
>At5g58230.1 68418.m07290 WD-40 repeat protein (MSI1) contains 6
WD-40 repeats (PF0400); identical to WD-40 repeat
protein (SP:O22467) [Arabidopsis thaliana]
Length = 424
Score = 40.3 bits (90), Expect = 9e-04
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +1
Query: 307 IFKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRS 420
IFK H G V+ + WH H L + D+ + IWD RS
Sbjct: 222 IFKAHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRS 259
Score = 27.1 bits (57), Expect = 8.9
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = +1
Query: 304 FIFKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIW 408
FI GHT + W+ ++S+ D ++IW
Sbjct: 368 FIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIW 402
>At4g35370.1 68417.m05025 transducin family protein / WD-40 repeat
family protein contains 4 (3 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 414
Score = 40.3 bits (90), Expect = 9e-04
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = +1
Query: 271 FNLERSRLSQDFIFKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHK 426
F+ S LS FI H V + ++ P+LL+T D+SV++WD +++
Sbjct: 328 FDTRASDLSPSFIIHAHDSEVSSISYNIHAPNLLATGSADESVKLWDLSNNQ 379
Score = 27.1 bits (57), Expect = 8.9
Identities = 9/34 (26%), Positives = 21/34 (61%)
Frame = +1
Query: 340 LCWHASHPDLLSTXXGDKSVRIWDTRSHKCAATI 441
L ++ + +++++ DK V++WD + KC T+
Sbjct: 220 LTFNWENRNIVASGSEDKKVKVWDVATGKCKVTM 253
>At5g16750.1 68418.m01961 transducin family protein / WD-40 repeat
family protein contains 8 WD-40 repeats (PF00400);
similar to transducin homolog sazD - Homo sapiens,
EMBL:U02609
Length = 876
Score = 32.3 bits (70), Expect(2) = 0.001
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +1
Query: 310 FKGHTGXVDQLCWHA-SHPDLLSTXXGDKSVRIWD 411
F+GH G V + +H S+ ++L + D +VR+WD
Sbjct: 140 FRGHKGVVSSILFHPDSNKNILISGSDDATVRVWD 174
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +1
Query: 292 LSQDFIFKGHTGXVDQL--CWHASHPDLLSTXXGDKSVRIWDTRSHKC 429
+S ++ GH V L C +S L+ T DK+VR+W+ S C
Sbjct: 391 MSCSYVLAGHKEVVLSLDTCVSSSGNVLIVTGSKDKTVRLWNATSKSC 438
Score = 27.1 bits (57), Expect(2) = 0.001
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 388 DKSVRIWDTRSHKCAATIPT 447
DK V +WD + C AT+ T
Sbjct: 213 DKVVNLWDLHDYSCKATVAT 232
>At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 785
Score = 39.1 bits (87), Expect = 0.002
Identities = 20/67 (29%), Positives = 38/67 (56%)
Frame = +1
Query: 259 SVAIFNLERSRLSQDFIFKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKCAAT 438
+V+IF++E + + IFKGH+ V +CW + + +L+++ D +V++W S C
Sbjct: 655 TVSIFDIENNNKRVN-IFKGHSSNVHSVCW-SPNGELVASVSED-AVKLWSLSSGDCIHE 711
Query: 439 IPTKGGK 459
+ G K
Sbjct: 712 LSNSGNK 718
Score = 29.5 bits (63), Expect = 1.7
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +1
Query: 346 WHASHPDLLSTXXGDKSVRIWDTRSHKC 429
+H S+PDLL G +++ +W+T +KC
Sbjct: 724 FHPSYPDLL-VIGGYQAIELWNTMENKC 750
Score = 28.3 bits (60), Expect = 3.8
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +2
Query: 188 HSSKVHSVGWSCDGRKLASGS 250
HSS VHSV WS +G +AS S
Sbjct: 674 HSSNVHSVCWSPNGELVASVS 694
>At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 39.1 bits (87), Expect = 0.002
Identities = 20/67 (29%), Positives = 38/67 (56%)
Frame = +1
Query: 259 SVAIFNLERSRLSQDFIFKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKCAAT 438
+V+IF++E + + IFKGH+ V +CW + + +L+++ D +V++W S C
Sbjct: 657 TVSIFDIENNNKRVN-IFKGHSSNVHSVCW-SPNGELVASVSED-AVKLWSLSSGDCIHE 713
Query: 439 IPTKGGK 459
+ G K
Sbjct: 714 LSNSGNK 720
Score = 29.5 bits (63), Expect = 1.7
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +1
Query: 346 WHASHPDLLSTXXGDKSVRIWDTRSHKC 429
+H S+PDLL G +++ +W+T +KC
Sbjct: 726 FHPSYPDLL-VIGGYQAIELWNTMENKC 752
Score = 28.3 bits (60), Expect = 3.8
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +2
Query: 188 HSSKVHSVGWSCDGRKLASGS 250
HSS VHSV WS +G +AS S
Sbjct: 676 HSSNVHSVCWSPNGELVASVS 696
>At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 39.1 bits (87), Expect = 0.002
Identities = 20/67 (29%), Positives = 38/67 (56%)
Frame = +1
Query: 259 SVAIFNLERSRLSQDFIFKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKCAAT 438
+V+IF++E + + IFKGH+ V +CW + + +L+++ D +V++W S C
Sbjct: 657 TVSIFDIENNNKRVN-IFKGHSSNVHSVCW-SPNGELVASVSED-AVKLWSLSSGDCIHE 713
Query: 439 IPTKGGK 459
+ G K
Sbjct: 714 LSNSGNK 720
Score = 29.5 bits (63), Expect = 1.7
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +1
Query: 346 WHASHPDLLSTXXGDKSVRIWDTRSHKC 429
+H S+PDLL G +++ +W+T +KC
Sbjct: 726 FHPSYPDLL-VIGGYQAIELWNTMENKC 752
Score = 28.3 bits (60), Expect = 3.8
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +2
Query: 188 HSSKVHSVGWSCDGRKLASGS 250
HSS VHSV WS +G +AS S
Sbjct: 676 HSSNVHSVCWSPNGELVASVS 696
>At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 39.1 bits (87), Expect = 0.002
Identities = 20/67 (29%), Positives = 38/67 (56%)
Frame = +1
Query: 259 SVAIFNLERSRLSQDFIFKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKCAAT 438
+V+IF++E + + IFKGH+ V +CW + + +L+++ D +V++W S C
Sbjct: 657 TVSIFDIENNNKRVN-IFKGHSSNVHSVCW-SPNGELVASVSED-AVKLWSLSSGDCIHE 713
Query: 439 IPTKGGK 459
+ G K
Sbjct: 714 LSNSGNK 720
Score = 29.5 bits (63), Expect = 1.7
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +1
Query: 346 WHASHPDLLSTXXGDKSVRIWDTRSHKC 429
+H S+PDLL G +++ +W+T +KC
Sbjct: 726 FHPSYPDLL-VIGGYQAIELWNTMENKC 752
Score = 28.3 bits (60), Expect = 3.8
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +2
Query: 188 HSSKVHSVGWSCDGRKLASGS 250
HSS VHSV WS +G +AS S
Sbjct: 676 HSSNVHSVCWSPNGELVASVS 696
>At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 39.1 bits (87), Expect = 0.002
Identities = 20/67 (29%), Positives = 38/67 (56%)
Frame = +1
Query: 259 SVAIFNLERSRLSQDFIFKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKCAAT 438
+V+IF++E + + IFKGH+ V +CW + + +L+++ D +V++W S C
Sbjct: 657 TVSIFDIENNNKRVN-IFKGHSSNVHSVCW-SPNGELVASVSED-AVKLWSLSSGDCIHE 713
Query: 439 IPTKGGK 459
+ G K
Sbjct: 714 LSNSGNK 720
Score = 29.5 bits (63), Expect = 1.7
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +1
Query: 346 WHASHPDLLSTXXGDKSVRIWDTRSHKC 429
+H S+PDLL G +++ +W+T +KC
Sbjct: 726 FHPSYPDLL-VIGGYQAIELWNTMENKC 752
Score = 28.3 bits (60), Expect = 3.8
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +2
Query: 188 HSSKVHSVGWSCDGRKLASGS 250
HSS VHSV WS +G +AS S
Sbjct: 676 HSSNVHSVCWSPNGELVASVS 696
>At1g29260.1 68414.m03578 peroxisomal targeting signal type 2
receptor (PEX7) identical to peroxisomal targeting
signal type 2 receptor (Pex7p) (GI:9502414) [Arabidopsis
thaliana]; WD-40 repeat protein family member; contains
6 WD-40 repeats (PF00400); similar to peroxismal
targeting signal 2 receptor (PTS2R) (Peroxin-7)
(PEX7)(SP:O00628) [Homo sapiens]
Length = 317
Score = 39.1 bits (87), Expect = 0.002
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +1
Query: 310 FKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKCAATIP 444
FK H V Q W+ H D+ ++ GD ++RIWD R IP
Sbjct: 145 FKEHAYCVYQAVWNPKHGDVFASASGDCTLRIWDVREPGSTMIIP 189
Score = 31.9 bits (69), Expect = 0.31
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 331 VDQLCWHASHPDLLSTXXGDKSVRIWDT 414
V +CW SH +L GD SV+I+DT
Sbjct: 63 VYDVCWSESHDSVLIAAIGDGSVKIYDT 90
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +1
Query: 307 IFKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHK 426
I H + W+ +L+T DK+V++WD RS++
Sbjct: 187 IIPAHDFEILSCDWNKYDDCILATSSVDKTVKVWDVRSYR 226
>At4g18900.1 68417.m02786 transducin family protein / WD-40 repeat
family protein contains 5 (4 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 461
Score = 37.5 bits (83), Expect = 0.006
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Frame = +1
Query: 274 NLERSRLSQDFIFKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHK--CAAT-IP 444
++ S + F GH + ++ S P+LL+T D++V++WD +++ C AT P
Sbjct: 353 SISASESNPSFTINGHDEAATSVSYNISAPNLLATGSKDRTVKLWDLSNNEPSCIATHNP 412
Query: 445 TKGG 456
GG
Sbjct: 413 NAGG 416
Score = 33.9 bits (74), Expect = 0.077
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +1
Query: 319 HTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKCAATI 441
HT V L W+ ++L++ DK V++WD + C T+
Sbjct: 232 HTRSVLGLAWNKEFRNILASASADKKVKVWDVATGTCKITM 272
>At5g10940.1 68418.m01269 transducin family protein / WD-40 repeat
family protein unnamed ORF cDNA FLJ10872, Homo sapiens,
EMBL:AK001734; contains Pfam PF00400: WD domain, G-beta
repeat (6 copies,1 weak)
Length = 757
Score = 37.1 bits (82), Expect = 0.008
Identities = 20/53 (37%), Positives = 29/53 (54%)
Frame = +1
Query: 289 RLSQDFIFKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKCAATIPT 447
RLSQ+ +GH G V+ L W+ S+ LL + D + IW+ S K +I T
Sbjct: 39 RLSQEQELEGHQGCVNALAWN-SNGSLLISGSDDLRINIWNYSSRKLLHSIDT 90
>At2g16780.1 68415.m01924 WD-40 repeat protein (MSI2) contains 5
WD-40 repeats (PF0400); identical to WD-40 repeat
protein MSI2 (SP:O22468) [Arabidopsis thaliana] WD-40
repeats (PF0400);
Length = 415
Score = 37.1 bits (82), Expect = 0.008
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = +1
Query: 292 LSQDFIFKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHK 426
L+ F+++GH + + WH + +L + D + IWDTR+++
Sbjct: 207 LNAMFVYEGHESAIADVSWHMKNENLFGSAGEDGRLVIWDTRTNQ 251
Score = 32.3 bits (70), Expect = 0.24
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = +1
Query: 259 SVAIFNLERSRLSQDFIFKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWD 411
+VA+F+L + + H G V Q+ W +H +L++ D+ + +WD
Sbjct: 284 TVALFDLRKLNAPLH-VMSSHEGEVFQVEWDPNHETVLASSGEDRRLMVWD 333
Score = 27.5 bits (58), Expect = 6.7
Identities = 8/35 (22%), Positives = 18/35 (51%)
Frame = +1
Query: 304 FIFKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIW 408
F GH + W+ + P ++++ D S+++W
Sbjct: 357 FSHGGHKAKISDFAWNKNEPWVIASVAEDNSLQVW 391
>At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless
protein, putative similar to notchless [Xenopus laevis]
GI:3687833; contains Pfam PF00400: WD domain, G-beta
repeat (8 copies)
Length = 473
Score = 36.7 bits (81), Expect = 0.011
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +1
Query: 307 IFKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKCAATIP 444
+F+GH G V Q+ W A LLS D +++IW+ R+ K +P
Sbjct: 397 VFRGHVGPVYQVSWSADSRLLLS-GSKDSTLKIWEIRTKKLKQDLP 441
Score = 27.5 bits (58), Expect = 6.7
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 188 HSSKVHSVGWSCDGRKLASGSFVKALQ 268
H+ +V +V WS DG K+ SG + L+
Sbjct: 443 HADEVFAVDWSPDGEKVVSGGKDRVLK 469
>At3g27640.1 68416.m03452 transducin family protein / WD-40 repeat
family protein contains seven WD-40 G-protein beta
repeats; similar to RA-regulated nuclear
matrix-associated protein (GI:14161320) {Homo sapiens}
Length = 535
Score = 36.3 bits (80), Expect = 0.015
Identities = 16/54 (29%), Positives = 31/54 (57%)
Frame = +1
Query: 256 KSVAIFNLERSRLSQDFIFKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTR 417
+++ ++++E ++ + I GHTG V +C H ++ DLL + D +WD R
Sbjct: 150 QTIKVWDVEENKCTGVLI--GHTGTVKSMCSHPTNSDLLVSGSRDGCFALWDLR 201
Score = 32.3 bits (70), Expect = 0.24
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = +1
Query: 274 NLERSRLSQDFIFKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKCAATI 441
N E++R +D+I H + + W LL T GD+++++WD +KC +
Sbjct: 115 NTEKARF-RDWI--AHYNAIFDISWIKGDSCLL-TASGDQTIKVWDVEENKCTGVL 166
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +1
Query: 307 IFKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKC 429
I KGH V + W S ++T D +VR+W+ ++ C
Sbjct: 376 ILKGHDFEVTAVDWSPSEIGKVATASDDFTVRLWNIENNIC 416
>At5g14530.1 68418.m01703 transducin family protein / WD-40 repeat
family protein similar to Will die slowly protein
(SP:Q9V3J8) [Drosophila melanogaster] ; contains Pfam
PF00400: WD domain, G-beta repeat (4 copies, 1 weak)
Length = 330
Score = 35.5 bits (78), Expect = 0.025
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +1
Query: 310 FKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKCAATIPTKG 453
FKGH V LC + +S D+SVR+WD R + C + +G
Sbjct: 110 FKGHKDRVVSLCMSPINDSFMSGSL-DRSVRLWDLRVNACQGILHLRG 156
>At5g08390.1 68418.m00988 transducin family protein / WD-40 repeat
family protein similar to katanin p80 subunit
[Strongylocentrotus purpuratus] GI:3005601; contains
Pfam profile PF00400: WD domain, G-beta repeat
Length = 871
Score = 35.5 bits (78), Expect = 0.025
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = +1
Query: 262 VAIFNLERSRLSQDFIFKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWD 411
V +++L +L +F K H G + L +H H LL+T DK+V+ WD
Sbjct: 260 VKVWDLTAGKLLHEF--KSHEGKIQSLDFHP-HEFLLATGSADKTVKFWD 306
>At2g47790.1 68415.m05965 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 5
(SP:Q9UGP9) [Homo sapiens]; The first 3 exons are
identical to that of GB:AJ224957. This gene appears to
be a truncated version of that in GB:AJ224957; contains
4 WD-40 repeats (PF00400)
Length = 392
Score = 35.1 bits (77), Expect = 0.034
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Frame = +1
Query: 313 KGHTGXVDQLCWH---ASHPDLLSTXXGDKSVRIWDTRSHKCAATIPTKGGKHKYS 471
KGH+ V+Q+ + A+ P +L + D ++R WDTRS + + I T + +S
Sbjct: 80 KGHSDTVNQIAFSSDSAASPHVLHSCSSDGTIRSWDTRSFQQVSRIDTGNDQEIFS 135
>At2g19540.1 68415.m02283 transducin family protein / WD-40 repeat
family protein contains WD-40 repeats (PF00400); similar
to Glutamate-rich WD repeat protein (GRWD)
(SP:Q9BQ67)[Homo sapiens]
Length = 469
Score = 34.7 bits (76), Expect = 0.044
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 310 FKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKCAA 435
F GHT V+ L W + ++ ++ D SV +WD R K A
Sbjct: 265 FAGHTASVEDLQWSPAEENVFASCSVDGSVAVWDIRLGKSPA 306
>At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 654
Score = 34.3 bits (75), Expect = 0.059
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +1
Query: 310 FKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKC 429
F+GHTG V + W S + L + DK+VR+W S+ C
Sbjct: 324 FRGHTGEVLDISW--SKDNYLLSASMDKTVRLWKVGSNDC 361
>At5g13480.1 68418.m01554 WD-40 repeat family protein similar to
WD-repeat protein WDC146 (SP:Q9C0J8|) {Homo sapiens};
contains 3 weak Pfam PF00400: WD domain, G-beta repeats;
Length = 711
Score = 34.3 bits (75), Expect = 0.059
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = +1
Query: 226 W*KAGFWVIRKSV-AIFNLERSRLSQDF-IFKGHTGXVDQLCWHASHPDLLSTXXGDKSV 399
W + G W++ S I L R ++ F+GHT V L WH H + + D S+
Sbjct: 318 WNQNGNWLLTASKDQIIKLYDIRTMKELQSFRGHTKDVTSLAWHPCHEEYFVSGSSDGSI 377
Query: 400 RIW 408
W
Sbjct: 378 CHW 380
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 316 GHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRS 420
GH V + WH + LL + D+ V++WDTRS
Sbjct: 266 GHGWDVKSVDWHPTK-SLLVSGGKDQLVKLWDTRS 299
>At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]; similar to rab11 binding protein GI:4512103
from [Bos taurus]
Length = 593
Score = 34.3 bits (75), Expect = 0.059
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = +1
Query: 316 GHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKC 429
GHTG V L W S +LL + DK+VR+W T +C
Sbjct: 270 GHTGDVLDLAW--SDSNLLLSASKDKTVRLWRTGCDQC 305
>At5g64730.1 68418.m08140 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to Will die slowly protein (SP:Q9V3J8) [Fruit
fly] {Drosophila m.]
Length = 299
Score = 33.9 bits (74), Expect = 0.077
Identities = 15/38 (39%), Positives = 25/38 (65%)
Frame = +1
Query: 310 FKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSH 423
F+GH G V+ + ++ S ++S D+S+R+WD RSH
Sbjct: 98 FRGHDGEVNAVKFNDSSSVVVSAGF-DRSLRVWDCRSH 134
>At5g43920.1 68418.m05372 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 523
Score = 33.9 bits (74), Expect = 0.077
Identities = 14/49 (28%), Positives = 31/49 (63%)
Frame = +1
Query: 262 VAIFNLERSRLSQDFIFKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIW 408
V I+NL+ ++ + + GH+ V+ + W+ +P +L++ D+++RIW
Sbjct: 467 VYIWNLKNTKPLE--VLSGHSMTVNCVSWNPKNPRMLASASDDQTIRIW 513
>At4g18905.1 68417.m02787 transducin family protein / WD-40 repeat
family protein contains 5 (4 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 494
Score = 33.9 bits (74), Expect = 0.077
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +1
Query: 319 HTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKCAATI 441
HT V L W+ ++L++ DK V++WD + C T+
Sbjct: 264 HTESVLGLAWNKEFRNILASASADKKVKVWDVATGTCKITM 304
Score = 33.1 bits (72), Expect = 0.14
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = +1
Query: 331 VDQLCWHASHPDLLSTXXGDKSVRIWDTRSHK--CAATIPTKGG 456
V + ++ S P+LL+T DKSV++WD +++ C AT G
Sbjct: 407 VSSISYNISTPNLLATGSMDKSVKLWDLSNNEPSCIATHQPNAG 450
>At1g52730.2 68414.m05959 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to UNR-interacting protein (WD-40 repeat protein
PT-WD) (SP:Q9Y3F4) [Homo sapiens]
Length = 343
Score = 33.9 bits (74), Expect = 0.077
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = +1
Query: 256 KSVAIFNLERSRLSQDFIFKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKCAA 435
K + +F++ R + K G + L W S +LS+ VR+WD RS K
Sbjct: 124 KILRVFDMNRLDAPPTEVDKS-PGSIRTLTWLHSDQTILSSCTDIGGVRLWDVRSGKIVQ 182
Query: 436 TIPTK 450
T+ TK
Sbjct: 183 TLETK 187
>At1g52730.1 68414.m05958 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to UNR-interacting protein (WD-40 repeat protein
PT-WD) (SP:Q9Y3F4) [Homo sapiens]
Length = 343
Score = 33.9 bits (74), Expect = 0.077
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = +1
Query: 256 KSVAIFNLERSRLSQDFIFKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKCAA 435
K + +F++ R + K G + L W S +LS+ VR+WD RS K
Sbjct: 124 KILRVFDMNRLDAPPTEVDKS-PGSIRTLTWLHSDQTILSSCTDIGGVRLWDVRSGKIVQ 182
Query: 436 TIPTK 450
T+ TK
Sbjct: 183 TLETK 187
>At4g35050.1 68417.m04974 WD-40 repeat protein (MSI3) contains 5
WD-40 repeats (PF0400); identical to WD-40 repeat
protein MSI3 (SP:O22469) [Arabidopsis thaliana]
Length = 424
Score = 33.5 bits (73), Expect = 0.10
Identities = 9/40 (22%), Positives = 23/40 (57%)
Frame = +1
Query: 307 IFKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHK 426
+++GH ++ + WH + ++ + D + IWD R+++
Sbjct: 213 VYEGHQSIIEDVAWHMKNENIFGSAGDDCQLVIWDLRTNQ 252
Score = 32.3 bits (70), Expect = 0.24
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +1
Query: 259 SVAIFNLERSRLSQDFIFKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWD 411
+VA+F+L + + K H G V Q+ W +H +L++ D+ + +WD
Sbjct: 285 TVALFDLRKLTAPLHVLSK-HEGEVFQVEWDPNHETVLASSGEDRRLMVWD 334
Score = 28.3 bits (60), Expect = 3.8
Identities = 9/35 (25%), Positives = 17/35 (48%)
Frame = +1
Query: 304 FIFKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIW 408
F GH + W+ P ++S+ D S+++W
Sbjct: 358 FSHGGHKAKISDFAWNKDEPWVISSVAEDNSLQVW 392
>At3g15610.1 68416.m01980 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to serine/threonine kinase receptor associated
protein GB:NP_035629 (SP:Q9Z1Z2) [Mus musculus];
UNR-interacting protein GB:NP_009109 [Homo sapiens]
Length = 341
Score = 33.5 bits (73), Expect = 0.10
Identities = 21/65 (32%), Positives = 29/65 (44%)
Frame = +1
Query: 256 KSVAIFNLERSRLSQDFIFKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKCAA 435
K + +F+L R I K G + L W +LS+ VR+WD RS K
Sbjct: 124 KILRVFDLNRLDAPPTEIDKS-PGSIRTLTWLHGDQTILSSCTDIGGVRLWDVRSGKIVQ 182
Query: 436 TIPTK 450
T+ TK
Sbjct: 183 TLETK 187
>At5g27570.1 68418.m03302 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to fizzy1 (GI:3298595)
{Xenopus laevis}; similar to "Will die slowly" protein,
Drosophia; putative cdc20 protein - Arabidopsis
thaliana, EMBL:AF029262
Length = 411
Score = 33.1 bits (72), Expect = 0.14
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = +1
Query: 256 KSVAIFNLERSRLSQDFIFKGHTGXVDQLCWHASHPDLLST--XXGDKSVRIWDTRSHKC 429
+SVA N R L + F+ HT V L W LL+T GD ++ W+T + C
Sbjct: 248 RSVASSNPTRQWLHR---FEEHTAAVRALAWCPFQASLLATGGGVGDGKIKFWNTHTGAC 304
Query: 430 AATIPT 447
++ T
Sbjct: 305 LNSVET 310
Score = 28.7 bits (61), Expect = 2.9
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 179 YIAHSSKVHSVGWSCDGRKLASG 247
Y+ H+ +V + WS G+KLASG
Sbjct: 214 YLGHTEEVCGLKWSESGKKLASG 236
>At3g20740.1 68416.m02624 fertilization-independent endosperm
protein (FIE) contains 6 WD-40 repeats (PF00400);
identical to fertilization-independent endosperm protein
(GI:4567095) [Arabidopsis thaliana]
Length = 369
Score = 33.1 bits (72), Expect = 0.14
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +1
Query: 316 GHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKCAATIPTKGGKHKYSM 474
GH V+++ P L+ T D+SVR+W+ + C GG H+Y +
Sbjct: 126 GHGDSVNEIRTQPLKPQLVITASKDESVRLWNVETGICILIFAGAGG-HRYEV 177
>At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1218
Score = 33.1 bits (72), Expect = 0.14
Identities = 13/52 (25%), Positives = 28/52 (53%)
Frame = +1
Query: 256 KSVAIFNLERSRLSQDFIFKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWD 411
+ V ++ + ++ + +GH V + +HA D++ + DKS+R+WD
Sbjct: 226 RQVKLWRMNETKAWEVDTLRGHMNNVSSVMFHAKQ-DIIVSNSEDKSIRVWD 276
Score = 31.5 bits (68), Expect = 0.41
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +1
Query: 310 FKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKCAATI 441
F H G V + +H S P L + D +++W+ ++H+C T+
Sbjct: 47 FDEHEGPVRGVHFHNSQP-LFVSGGDDYKIKVWNYKTHRCLFTL 89
>At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1216
Score = 33.1 bits (72), Expect = 0.14
Identities = 13/52 (25%), Positives = 28/52 (53%)
Frame = +1
Query: 256 KSVAIFNLERSRLSQDFIFKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWD 411
+ V ++ + ++ + +GH V + +HA D++ + DKS+R+WD
Sbjct: 226 RQVKLWRMNETKAWEVDTLRGHMNNVSSVMFHAKQ-DIIVSNSEDKSIRVWD 276
Score = 31.5 bits (68), Expect = 0.41
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +1
Query: 310 FKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKCAATI 441
F H G V + +H S P L + D +++W+ ++H+C T+
Sbjct: 47 FDEHEGPVRGVHFHNSQP-LFVSGGDDYKIKVWNYKNHRCLFTL 89
>At5g25150.1 68418.m02981 transducin family protein / WD-40 repeat
family protein similar to TBP-associated factor
(GI:1732075) [Homo sapiens] and to 100 kDa subunit of
Pol II transcription factor (GI:1491718) {Homo sapiens];
contains Pfam PF00400: WD domain, G-beta repeat (6
copies)|8689032|gb|AV528749.1|AV528749
Length = 666
Score = 32.7 bits (71), Expect = 0.18
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +1
Query: 307 IFKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKC 429
I GH VD WH + + ++T DK+VR+WD ++ +C
Sbjct: 497 IMAGHLSDVD---WHPNC-NYIATGSSDKTVRLWDVQTGEC 533
>At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); rab11 binding protein, Bos
taurus, EMBL:AF117897
Length = 905
Score = 32.7 bits (71), Expect = 0.18
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +1
Query: 310 FKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKC 429
F GH V L W S LL + DK+VR+WD + C
Sbjct: 515 FTGHLDDVLDLSW--SRSQLLLSSSMDKTVRLWDIETQSC 552
>At4g33270.1 68417.m04734 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); WD-repeat protein -Daucus
carota,PID:g2253631
Length = 457
Score = 32.7 bits (71), Expect = 0.18
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +1
Query: 319 HTGXVDQLCWHASHPDLLSTXXG--DKSVRIWDTRSHKCAATIPT 447
HT V L W +LL+T G D++++ W+T + C ++ T
Sbjct: 313 HTSAVKALAWCPFQANLLATGGGGGDRTIKFWNTHTGACLNSVDT 357
>At4g33260.1 68417.m04733 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); WD-repeat protein -Daucus
carota, PID:g2253631
Length = 447
Score = 32.7 bits (71), Expect = 0.18
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +1
Query: 319 HTGXVDQLCWHASHPDLLSTXXG--DKSVRIWDTRSHKCAATIPT 447
HT V L W +LL+T G D++++ W+T + C ++ T
Sbjct: 303 HTSAVKALAWCPFQANLLATGGGGGDRTIKFWNTHTGACLNSVDT 347
>At4g32990.1 68417.m04692 transducin family protein / WD-40 repeat
family protein HIRA protein, Drosophila melanogaster,
PID:e1250847
Length = 318
Score = 32.7 bits (71), Expect = 0.18
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Frame = +1
Query: 313 KGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWD----TRSHKC 429
+GHT V + W+ + ++++ DK+VRIW+ TRS C
Sbjct: 17 EGHTDRVWNVAWNPAADGVIASCSADKTVRIWEQSSLTRSWTC 59
Score = 32.3 bits (70), Expect = 0.24
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +1
Query: 307 IFKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWD 411
+ +GH V + W+AS LL+T DKSV IW+
Sbjct: 87 VLRGHESEVKSVSWNASG-SLLATCGRDKSVWIWE 120
>At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p80
subunit, putative similar to contains 6 WD-40 repeats
(PF00400); katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 974
Score = 32.7 bits (71), Expect = 0.18
Identities = 16/59 (27%), Positives = 31/59 (52%)
Frame = +1
Query: 262 VAIFNLERSRLSQDFIFKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKCAAT 438
+ +++LE S++ + F GH + +H + L++ D ++R+WDTR C T
Sbjct: 31 IKLWDLEESKMVR--AFTGHRSNCSAVEFHP-FGEFLASGSSDTNLRVWDTRKKGCIQT 86
>At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG)
contains seven G-protein beta WD-40 repeats; beta
transducin-like protein, Podospora anserina, gb:L28125;
contains Pfam profiles PF04503: Single-stranded DNA
binding protein, SSDP; PF00400:WD domain, G-beta repeat;
identical to cDNA LEUNIG (LEUNIG) GI:11141604
Length = 931
Score = 32.3 bits (70), Expect = 0.24
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +1
Query: 310 FKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKCAATIPTKGG 456
F GH+ V L +H DL+ + D +R W + C T KGG
Sbjct: 732 FMGHSSMVTSLDFHPIKDDLICSCDNDNEIRYWSINNGSC--TRVYKGG 778
>At5g26900.1 68418.m03208 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to fizzy1 (GI:3298595)
{Xenopus laevis}; WD-repeat protein, carrot, PIR:T14352
Length = 444
Score = 31.9 bits (69), Expect = 0.31
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +1
Query: 310 FKGHTGXVDQLCWHASHPDLLST--XXGDKSVRIWDTRSHKCAATIPT 447
F+ HT V L W LL+T GD ++ W+T + C ++ T
Sbjct: 296 FEEHTAAVRALAWCPFQASLLATGGGVGDGKIKFWNTHTGACLNSVET 343
>At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 883
Score = 31.9 bits (69), Expect = 0.31
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = +1
Query: 310 FKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKC 429
F+GH V L W S LLS+ DK+VR+W+ S C
Sbjct: 509 FQGHVDDVLDLAWSKSQ-HLLSSSM-DKTVRLWNLSSQTC 546
>At2g19430.1 68415.m02267 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 5
(SP:Q9UGP9) [Homo sapiens]; contains 7 Trp-Asp WD-40
repeats
Length = 367
Score = 31.9 bits (69), Expect = 0.31
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +1
Query: 310 FKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKCAATIPTKGGKHK 465
FKGH+ + + +S +L T D + RIWD ++ KC I ++ K +
Sbjct: 197 FKGHSDYLHTVVSRSSASQIL-TGSEDGTARIWDCKTGKCVKVIGSQDKKSR 247
>At1g52360.1 68414.m05909 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to (SP:O55029) Coatomer
beta' subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:O55029) [Mus musculus]; similar to GI:298096 from
[Homo sapiens]
Length = 926
Score = 31.9 bits (69), Expect = 0.31
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +1
Query: 313 KGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKCAATI 441
+GHT V +C+H P ++ T D +VRIW +++ T+
Sbjct: 226 EGHTHNVSAVCFHPELP-IIITGSEDGTVRIWHATTYRLENTL 267
>At5g54200.1 68418.m06748 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 825
Score = 31.5 bits (68), Expect = 0.41
Identities = 18/40 (45%), Positives = 21/40 (52%)
Frame = +1
Query: 310 FKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKC 429
F GH V L W S LLS+ DK+VR+WD S C
Sbjct: 464 FVGHLDDVLDLSWSKSQ-HLLSSSM-DKTVRLWDLSSKTC 501
>At5g27080.1 68418.m03231 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to fizzy1 (GI:3298595)
{Xenopus laevis};
Length = 466
Score = 31.5 bits (68), Expect = 0.41
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +1
Query: 310 FKGHTGXVDQLCWHASHPDLLST--XXGDKSVRIWDTRSHKCAATIPT 447
F+ HT V L W LL+T GD ++ W+T + C ++ T
Sbjct: 294 FEEHTAAVRALAWCPFQATLLATGGGVGDGKIKFWNTHTGACLNSVET 341
Score = 28.7 bits (61), Expect = 2.9
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 179 YIAHSSKVHSVGWSCDGRKLASG 247
Y+ H+ +V + WS G+KLASG
Sbjct: 245 YLGHTEEVCGLKWSESGKKLASG 267
>At3g15980.3 68416.m02022 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 31.5 bits (68), Expect = 0.41
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1
Query: 316 GHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKCAATI 441
GHT V +C+H P ++ T D +VRIW +++ T+
Sbjct: 227 GHTHNVSAVCFHPELP-IIITGSEDGTVRIWHATTYRLENTL 267
>At3g15980.2 68416.m02021 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 31.5 bits (68), Expect = 0.41
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1
Query: 316 GHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKCAATI 441
GHT V +C+H P ++ T D +VRIW +++ T+
Sbjct: 227 GHTHNVSAVCFHPELP-IIITGSEDGTVRIWHATTYRLENTL 267
>At3g15980.1 68416.m02020 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 909
Score = 31.5 bits (68), Expect = 0.41
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1
Query: 316 GHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKCAATI 441
GHT V +C+H P ++ T D +VRIW +++ T+
Sbjct: 227 GHTHNVSAVCFHPELP-IIITGSEDGTVRIWHATTYRLENTL 267
>At5g27945.1 68418.m03364 transducin family protein / WD-40 repeat
family protein fizzy-related (FZR); contains 6 WD-40
repeats (PF00400); WD-repeat protein,
carrot,(gi:2253631) PIR:T14352
Length = 428
Score = 31.1 bits (67), Expect = 0.55
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = +1
Query: 310 FKGHTGXVDQLCWHASHPDLLST--XXGDKSVRIWDTRSHKCAATIPT 447
F+ HT V L W LL+T GD + W+T + C ++ T
Sbjct: 280 FEEHTAAVRALAWCPFQASLLATGGGVGDGKINFWNTHTGACLNSVET 327
Score = 29.1 bits (62), Expect = 2.2
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 179 YIAHSSKVHSVGWSCDGRKLASG 247
Y+ H+ +V + WS G+KLASG
Sbjct: 232 YVGHTEEVCGLKWSESGKKLASG 254
>At4g03020.1 68417.m00410 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to L. erythrorhizon LEC14B, GenBank accession
number Q40153
Length = 493
Score = 31.1 bits (67), Expect = 0.55
Identities = 14/53 (26%), Positives = 29/53 (54%)
Frame = +1
Query: 259 SVAIFNLERSRLSQDFIFKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTR 417
S+ +++LE +R+S + HT V+ +C+ +L+ + D ++WD R
Sbjct: 252 SIYVYDLEANRVSLRTV--AHTSDVNTVCFADESGNLILSGSDDNLCKVWDRR 302
>At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similiar to rab11 binding
protein (GI:4512103) [Bos taurus]
Length = 903
Score = 31.1 bits (67), Expect = 0.55
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +1
Query: 313 KGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKC 429
KGH + L W S LL + DK+VR+WD + C
Sbjct: 503 KGHLDAILDLSWSKSQ--LLLSSSMDKTVRLWDIETKTC 539
>At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1
protein (SCD1) contains Pfam PF02141: DENN (AEX-3)
domain; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies); identical to stomatal cytokinesis defective
[Arabidopsis thaliana] GI:19743728; supporting cDNA
gi|19743727|gb|AY082605.1|; PMID 12874123
Length = 1187
Score = 31.1 bits (67), Expect = 0.55
Identities = 17/61 (27%), Positives = 32/61 (52%)
Frame = +1
Query: 259 SVAIFNLERSRLSQDFIFKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKCAAT 438
SV +++ + ++L ++ KGH V C + + T D +V++WD R+ C AT
Sbjct: 920 SVIVWDKQTTQLLEEL--KGHDSQVS--CVKMLSGERVLTAAHDGTVKMWDVRTDMCVAT 975
Query: 439 I 441
+
Sbjct: 976 V 976
>At2g40360.1 68415.m04977 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to block of proliferation protein Bop1
(GI:1679772) [Mus musculus]
Length = 753
Score = 30.7 bits (66), Expect = 0.72
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +1
Query: 310 FKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKC 429
+KGHTG V + +S + +++ D SVR+W+ + +C
Sbjct: 419 YKGHTGAVTSISTDSSG-EWIASGSTDGSVRMWEVETGRC 457
>At2g26060.1 68415.m03129 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to WD40-repeat containing protein Ciao 1
(SP:O76071) [Homo sapiens]
Length = 352
Score = 30.7 bits (66), Expect = 0.72
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 6/42 (14%)
Frame = +1
Query: 313 KGHTGXVDQLCWH--ASHPD----LLSTXXGDKSVRIWDTRS 420
+GHT V + W+ +SH D +L++ GD +VRIW+ S
Sbjct: 17 EGHTDRVWSVAWNPVSSHADGVSPILASCSGDNTVRIWEQSS 58
>At1g64610.2 68414.m07324 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 647
Score = 30.7 bits (66), Expect = 0.72
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +1
Query: 268 IFNLERSRLSQDFIFKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKCAAT 438
IF++ L + FKGH G + L W S L + D++VR+W +C T
Sbjct: 307 IFSISEKPLHE---FKGHIGEILDLSW--SEKGYLLSSSVDETVRLWRVGCDECLRT 358
>At1g64610.1 68414.m07323 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 647
Score = 30.7 bits (66), Expect = 0.72
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +1
Query: 268 IFNLERSRLSQDFIFKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKCAAT 438
IF++ L + FKGH G + L W S L + D++VR+W +C T
Sbjct: 307 IFSISEKPLHE---FKGHIGEILDLSW--SEKGYLLSSSVDETVRLWRVGCDECLRT 358
>At5g21040.1 68418.m02503 F-box family protein / WD-40 repeat family
protein contains G-protein beta WD-40 repeats
Length = 539
Score = 30.3 bits (65), Expect = 0.95
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +1
Query: 301 DFIFKGHTGXVDQLCWHASHPDLLSTXXG--DKSVRIWDTRSHKCAATI 441
+F GH G + L D+ S G D SVRIWD S KC T+
Sbjct: 250 EFRLWGHEGPITSLAL-----DMTSIFSGSWDMSVRIWDRSSMKCVKTL 293
>At4g02730.1 68417.m00372 transducin family protein / WD-40 repeat
family protein similar to C. elegans putative WD-repeat
protein C14B1.4 (SP:Q17963)
Length = 333
Score = 30.3 bits (65), Expect = 0.95
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +1
Query: 307 IFKGHTGXVDQLCWHASHP-DLLSTXXGDKSVRIWDTRSHKCAATI 441
+ +GHT V C + + P +L+ + D+++RIW+ ++ KC I
Sbjct: 123 VLRGHTNFV--FCVNFNPPSNLIVSGSFDETIRIWEVKTGKCVRMI 166
>At2g22040.1 68415.m02617 transducin family protein / WD-40 repeat
family protein similar to Pop3 (GI:3434986)
[Schizosaccharomyces pombe]; contains Pfam PF00400: WD
domain, G-beta repeat (6 copies, 2 weak);
Length = 312
Score = 30.3 bits (65), Expect = 0.95
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +2
Query: 131 LSELRSYFASHNTTREYIAHSSKVHSVGWSCDGRKLASGS 250
L +LRSY H R +++H+ V +VG+ G + SGS
Sbjct: 65 LFDLRSY-NPHIPVRNFVSHTKNVMAVGFQYTGHMMYSGS 103
>At5g54520.1 68418.m06788 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to pre-mRNA splicing
factor PRP17 (SP:O60508) [Homo sapiens]
Length = 457
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 316 GHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSH 423
GHT V + W SH LL++ D +V +W+ S+
Sbjct: 158 GHTKAVTAIDWSTSHVHLLASAGLDGAVYVWNVWSN 193
>At4g28450.1 68417.m04071 transducin family protein / WD-40 repeat
family protein SOF1 (involved in rRNA processing)
protein-yeast
Length = 442
Score = 29.9 bits (64), Expect = 1.3
Identities = 19/58 (32%), Positives = 30/58 (51%)
Frame = +1
Query: 268 IFNLERSRLSQDFIFKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKCAATI 441
I+N RS+ Q F + T V + ++ P+LL+T D+S+ I+D R A I
Sbjct: 177 IWNHNRSQPVQSF--QWGTDSVISVRFNPGEPNLLATSASDRSITIYDLRLSSAARKI 232
>At3g52030.1 68416.m05707 F-box family protein / WD-40 repeat family
protein
Length = 454
Score = 29.9 bits (64), Expect = 1.3
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 367 LLSTXXGDKSVRIWDTRSHKC 429
LL T GDK +R+W +S+KC
Sbjct: 130 LLLTGVGDKVMRLWSLKSYKC 150
>At5g42010.1 68418.m05114 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 709
Score = 29.1 bits (62), Expect = 2.2
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 310 FKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIW 408
F+GHTG + L W S L + D++VR+W
Sbjct: 359 FRGHTGEILDLSW--SEKGFLLSSSVDETVRLW 389
>At4g04940.1 68417.m00718 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats
Length = 910
Score = 29.1 bits (62), Expect = 2.2
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 310 FKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWD 411
F+GHT + LC+ ++S+ D S+RIWD
Sbjct: 553 FRGHTDRITDLCFSEDGKWVISSSM-DGSLRIWD 585
>At3g49660.1 68416.m05427 transducin family protein / WD-40 repeat
family protein beta-transducin, Schizosaccharomyces
pombe, EMBL:CAA17803
Length = 317
Score = 29.1 bits (62), Expect = 2.2
Identities = 16/63 (25%), Positives = 34/63 (53%)
Frame = +1
Query: 256 KSVAIFNLERSRLSQDFIFKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKCAA 435
K++ ++++E L + I GHT + ++ +++ + D++VRIWD + KC
Sbjct: 93 KTLKLWDVETGSLIKTLI--GHTNYAFCVNFNPQS-NMIVSGSFDETVRIWDVTTGKCLK 149
Query: 436 TIP 444
+P
Sbjct: 150 VLP 152
>At2g43770.1 68415.m05441 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to U5 snRNP-specific 40 kDa protein (GI:3820594)
[Homo sapiens]
Length = 343
Score = 29.1 bits (62), Expect = 2.2
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +1
Query: 307 IFKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHK 426
+ KGH + L W + ++S DK+VR WD + K
Sbjct: 91 VLKGHKNAILDLHWTSDGSQIVSASP-DKTVRAWDVETGK 129
Score = 28.7 bits (61), Expect = 2.9
Identities = 12/44 (27%), Positives = 19/44 (43%)
Frame = +1
Query: 319 HTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKCAATIPTK 450
H+ V+ C P L+ + D + ++WD R T P K
Sbjct: 137 HSSFVNSCCPTRRGPPLIISGSDDGTAKLWDMRQRGAIQTFPDK 180
>At5g08560.1 68418.m01018 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 589
Score = 28.7 bits (61), Expect = 2.9
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +1
Query: 316 GHTGXVDQLCWHASHPDLLSTXXGDKSVRIW 408
GH G V+ + W ++ +L++ D ++RIW
Sbjct: 529 GHAGAVNCVSWSPTNLHMLASASDDGTIRIW 559
>At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 347
Score = 28.7 bits (61), Expect = 2.9
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 316 GHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRS 420
GHT V + S+P+ + D + R+WDTR+
Sbjct: 202 GHTADVLSVSISGSNPNWFISGSCDSTARLWDTRA 236
>At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 315
Score = 28.7 bits (61), Expect = 2.9
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 316 GHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRS 420
GHT V + S+P+ + D + R+WDTR+
Sbjct: 140 GHTADVLSVSISGSNPNWFISGSCDSTARLWDTRA 174
>At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 377
Score = 28.7 bits (61), Expect = 2.9
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 316 GHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRS 420
GHT V + S+P+ + D + R+WDTR+
Sbjct: 202 GHTADVLSVSISGSNPNWFISGSCDSTARLWDTRA 236
>At3g12460.1 68416.m01551 hypothetical protein
Length = 242
Score = 28.7 bits (61), Expect = 2.9
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +2
Query: 386 ETNLLGYGIHD-HTNARRQSQPKVENINIAWXPNGQH 493
+ +++G IHD + R S P V + + W P+G H
Sbjct: 33 DPSVIGQWIHDVFFHNRLSSHPLVVGVGVQWTPSGYH 69
>At5g63010.1 68418.m07905 WD-40 repeat family protein contains 4
WD-40 repeats (PF00400);low similarity to
photomorphogenesis repressor (COP1) GI:2702280
[Arabidopsis thaliana] and COP1 GI:11127996 [Ipomoea
nil]
Length = 343
Score = 28.3 bits (60), Expect = 3.8
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 313 KGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRS 420
K HT V + + S P + T D+++R+WDTRS
Sbjct: 207 KVHTMGVCCISSNPSDPYSIFTGSYDETLRVWDTRS 242
>At5g56190.2 68418.m07011 WD-40 repeat family protein contains 3 (2
significant) WD-40 repeats (PF0400); similar to beta
transducin-like protein HET-E2C*40 (GI:17225208)
[Podospora anserina]
Length = 447
Score = 28.3 bits (60), Expect = 3.8
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +1
Query: 313 KGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTR 417
KGH WH + +T DK+ RIWDTR
Sbjct: 316 KGHLDYSFASAWHPNGVTF-ATGNQDKTCRIWDTR 349
>At5g56190.1 68418.m07010 WD-40 repeat family protein contains 3 (2
significant) WD-40 repeats (PF0400); similar to beta
transducin-like protein HET-E2C*40 (GI:17225208)
[Podospora anserina]
Length = 441
Score = 28.3 bits (60), Expect = 3.8
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +1
Query: 313 KGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTR 417
KGH WH + +T DK+ RIWDTR
Sbjct: 310 KGHLDYSFASAWHPNGVTF-ATGNQDKTCRIWDTR 343
>At5g18525.1 68418.m02190 WD-40 repeat family protein contains Pfam
profile PF00400: WD domain, G-beta repeat
Length = 580
Score = 28.3 bits (60), Expect = 3.8
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +1
Query: 310 FKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKCAATIPTKG 453
++ H G V +L SH LL + DK++RIWD R KG
Sbjct: 450 WRAHDGYVTKLVAPESH--LLVSSSLDKTLRIWDLRKSWTPQPFVVKG 495
>At5g15900.1 68418.m01860 expressed protein several hypothetical
proteins - Arabidopsis thaliana
Length = 426
Score = 28.3 bits (60), Expect = 3.8
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +2
Query: 389 TNLLGYGIHDHTNARRQSQPKVENINIAWXPNG 487
TN + IH+H N + +P + I W P G
Sbjct: 84 TNTTCWAIHEHQNCMKFGRPDTDFIKWKWKPYG 116
>At3g44600.1 68416.m04794 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein similar to SP|P87051
Peptidyl-prolyl cis-trans isomerase cyp2 (EC 5.2.1.8)
(Cyclophilin cyp2) {Schizosaccharomyces pombe}; contains
Pfam profiles PF00160: peptidyl-prolyl cis-trans
isomerase cyclophilin-type, PF00400: WD domain G-beta
repeat
Length = 631
Score = 28.3 bits (60), Expect = 3.8
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -3
Query: 534 SINETKXPFSLPX-WCCPLGXHAIFMFS 454
++NE+K P + P CC H I+MFS
Sbjct: 407 NVNESKEPLTDPTILCCAFKKHRIYMFS 434
>At1g80670.1 68414.m09466 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400) (1
weak); similar to Hypothetical RAE1-like
protein.(SP:Q38942) [Arabidopsis thaliana]; similar to
mRNA-associated protein mrnp 41 ((mRNA export protein)
(GB:AAC28126) (GI:1903456)(RAE1) (MRNP41) (SP:P78406)
[Homo sapiens]
Length = 349
Score = 28.3 bits (60), Expect = 3.8
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 319 HTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTR 417
H G + + W +LL+T DK+++ WDTR
Sbjct: 113 HEGPIAAMAWIPGM-NLLATGSWDKTLKYWDTR 144
>At1g10580.1 68414.m01192 transducin family protein / WD-40 repeat
family protein similar to splicing factor hPRP17
(gi|3283220); contains 7 WD-40 repeats (PF00400);similar
to ESTs emb|F15435 and dbj|AUO62661
Length = 573
Score = 28.3 bits (60), Expect = 3.8
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +1
Query: 310 FKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKCAATIPTKGGKHKY 468
+ GH V +C+ L T DK+++ WDT + + +T T GK Y
Sbjct: 322 YMGHAKAVRDICFSNDGSKFL-TAGYDKNIKYWDTETGQVISTFST--GKIPY 371
>At1g04140.2 68414.m00404 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to neural cell adhesion molecule 2, large
isoform precursor gb|M76710 from Xenopus laevis, and
beta transducin from S. cerevisiae gb|Q05946. ESTs
gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
gb|H36304, and gb|N65606 come from
Length = 793
Score = 28.3 bits (60), Expect = 3.8
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = +1
Query: 307 IFKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKCAAT 438
I GH + +H H +++++ D VR+W+ ++ +C T
Sbjct: 140 ILTGHRRTPWVVRFHPRHSEIVASGSLDHEVRLWNAKTGECIRT 183
>At1g04140.1 68414.m00403 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to neural cell adhesion molecule 2, large
isoform precursor gb|M76710 from Xenopus laevis, and
beta transducin from S. cerevisiae gb|Q05946. ESTs
gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
gb|H36304, and gb|N65606 come from
Length = 790
Score = 28.3 bits (60), Expect = 3.8
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = +1
Query: 307 IFKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKCAAT 438
I GH + +H H +++++ D VR+W+ ++ +C T
Sbjct: 140 ILTGHRRTPWVVRFHPRHSEIVASGSLDHEVRLWNAKTGECIRT 183
>At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1
protein (ZFWD1) identical to zfwd1 protein (GI:12057164)
[Arabidopsis thaliana]
Length = 430
Score = 27.9 bits (59), Expect = 5.1
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 355 SHPDLLSTXXGDKSVRIWDTRSHKCAATIPTKG 453
S D L T D++VRIWD S +C + G
Sbjct: 154 SGSDKLYTASKDETVRIWDCASGQCTGVLNLGG 186
>At3g13340.1 68416.m01679 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (3 copies, 1
significant); similar to Trp-Asp repeat protein
(PIR:T40094) [Schizosaccharomyces]
Length = 447
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +1
Query: 322 TGXVDQLCWHASHPD--LLSTXXGDKSVRIWDTRSHKCAATI 441
+G +D A HPD ST DK+ R+WD R+ + T+
Sbjct: 316 SGHLDFSFASAWHPDGVTFSTGNQDKTCRVWDIRNLSQSVTV 357
>At1g18830.1 68414.m02345 transducin family protein / WD-40 repeat
family protein similar to Sec31p (GI:13928450) {Oryza
sativa}
Length = 969
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +1
Query: 310 FKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKCAATIPT 447
F GH V + W S L T D W+T++ K A +PT
Sbjct: 248 FVGHQRGVIAMEWCPSDSLYLLTCGKDNRTICWNTKTGKIVAELPT 293
>At5g43930.1 68418.m05374 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to WD-repeat protein 5 (SP:Q9UGP9) [Homo
sapiens]
Length = 726
Score = 27.5 bits (58), Expect = 6.7
Identities = 10/41 (24%), Positives = 22/41 (53%)
Frame = +1
Query: 307 IFKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKC 429
+ GH + +H H +++++ D VR+W+T + +C
Sbjct: 143 VLTGHRRTPWVVRFHPHHSEIVASGSLDLEVRLWNTTTSEC 183
>At3g63460.2 68416.m07146 WD-40 repeat family protein hypothetical
protein contains similarity to ec31p [Oryza sativa]
gi|13928450|dbj|BAB47154; contains Pfam profile PF00400:
WD domain, G-beta repeat
Length = 1102
Score = 27.5 bits (58), Expect = 6.7
Identities = 14/45 (31%), Positives = 18/45 (40%)
Frame = +1
Query: 310 FKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKCAATIP 444
F GH V + W S L T D WDT + + A +P
Sbjct: 259 FTGHQRGVIAMEWCPSDSSYLLTCAKDNRTICWDTNTAEIVAELP 303
>At3g63460.1 68416.m07145 WD-40 repeat family protein hypothetical
protein contains similarity to ec31p [Oryza sativa]
gi|13928450|dbj|BAB47154; contains Pfam profile PF00400:
WD domain, G-beta repeat
Length = 1104
Score = 27.5 bits (58), Expect = 6.7
Identities = 14/45 (31%), Positives = 18/45 (40%)
Frame = +1
Query: 310 FKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKCAATIP 444
F GH V + W S L T D WDT + + A +P
Sbjct: 259 FTGHQRGVIAMEWCPSDSSYLLTCAKDNRTICWDTNTAEIVAELP 303
>At3g18060.1 68416.m02297 transducin family protein / WD-40 repeat
family protein similar to 66 kDa stress protein
(SP:P90587) [Physarum polycephalum (Slime mold)];
similar to WDR1 protein GB:AAD05042 [Gallus gallus]
(Genomics 56 (1), 59-69 (1999)); contains 11 WD-40
repeats (PF00400)
Length = 609
Score = 27.5 bits (58), Expect = 6.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 316 GHTGXVDQLCWHASHPDLLSTXXGDKSVRIWD 411
GH G + + W +L T DKS +IWD
Sbjct: 230 GHKGSIYAVSWSPDGKQVL-TVSADKSAKIWD 260
>At1g27840.1 68414.m03412 transducin family protein / WD-40 repeat
family protein contains similarity to cockayne syndrome
complementation group A protein GB:U28413 GI:975301 from
[Homo sapiens]; confirmed by cDNA gi:1598289
Length = 450
Score = 27.5 bits (58), Expect = 6.7
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +1
Query: 316 GHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKC 429
GH V + W S +L T D ++R WD R C
Sbjct: 188 GHRDGVMSVEWSTSSEWVLYTGGCDGAIRFWDIRRAGC 225
>At1g19750.1 68414.m02469 transducin family protein / WD-40 repeat
family protein similar to Cockayne syndrome
complementaion group A proteins (GI:18077663)[Mus
musculus] and (SP:Q13216)[Homo sapiens]; confirmed by
full-length cDNA GI:15982896
Length = 450
Score = 27.5 bits (58), Expect = 6.7
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +1
Query: 316 GHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKC 429
GH V + W S +L T D ++R WD R C
Sbjct: 188 GHRDGVMSVEWSTSSEWVLYTGGCDGAIRFWDIRRAGC 225
Score = 27.1 bits (57), Expect = 8.9
Identities = 11/53 (20%), Positives = 21/53 (39%)
Frame = +1
Query: 316 GHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKCAATIPTKGGKHKYSM 474
GH + W+ + T D V++WDT + + G ++ +M
Sbjct: 101 GHKYAISSAIWYPIDTGMFITGSFDHYVKVWDTNTSQVVVDFKMPGKVYRTAM 153
>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
similarity to unknown protein (ref|NP_005638.1)
Length = 613
Score = 27.1 bits (57), Expect = 8.9
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +1
Query: 310 FKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKCAATIPTKGG 456
F GH V L + + + + +++ DKS+ IW + K T GG
Sbjct: 537 FNGHREPVYSLAF-SPNGEYIASGSLDKSIHIWSIKEGKIVKTYTGNGG 584
>At5g66240.2 68418.m08345 transducin family protein / WD-40 repeat
family protein contains Pfam PF00400: WD domain, G-beta
repeat (4 copies, 1 weak); similar to Will die slowly
protein. {Drosophila melanogaster} (SP:Q9V3J8)
{Drosophila melanogaster}
Length = 331
Score = 27.1 bits (57), Expect = 8.9
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +1
Query: 310 FKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKCAATIPTKG 453
FKGH V L + +S D++V +WD R KC + +G
Sbjct: 116 FKGHHDRVVSLSLCSGGECFISGSL-DRTVLLWDQRVEKCQGLLRVQG 162
>At5g66240.1 68418.m08344 transducin family protein / WD-40 repeat
family protein contains Pfam PF00400: WD domain, G-beta
repeat (4 copies, 1 weak); similar to Will die slowly
protein. {Drosophila melanogaster} (SP:Q9V3J8)
{Drosophila melanogaster}
Length = 328
Score = 27.1 bits (57), Expect = 8.9
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +1
Query: 310 FKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKCAATIPTKG 453
FKGH V L + +S D++V +WD R KC + +G
Sbjct: 113 FKGHHDRVVSLSLCSGGECFISGSL-DRTVLLWDQRVEKCQGLLRVQG 159
>At5g15550.1 68418.m01820 transducin family protein / WD-40 repeat
family protein similar to YTM1 - Homo sapiens,
EMBL:AF242546; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies,1 weak);
Length = 433
Score = 27.1 bits (57), Expect = 8.9
Identities = 14/52 (26%), Positives = 21/52 (40%)
Frame = +1
Query: 304 FIFKGHTGXVDQLCWHASHPDLLSTXXGDKSVRIWDTRSHKCAATIPTKGGK 459
F F H+ + WH S L + D + +WD R+ + I T K
Sbjct: 352 FQFSSHSSWISACKWHKSSWFHLLSASYDGKIMLWDLRTAWPLSVIDTHNDK 403
>At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similar to Fzr1
(GI:6463679){Homo sapiens}
Length = 481
Score = 27.1 bits (57), Expect = 8.9
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 182 IAHSSKVHSVGWSCDGRKLASG 247
+ H S+V + WS D R+LASG
Sbjct: 295 VGHKSEVCGLKWSHDDRELASG 316
>At3g18140.1 68416.m02306 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to Pop3 (GP:3434986) [Schizosaccharomyces pombe]
Length = 305
Score = 27.1 bits (57), Expect = 8.9
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 179 YIAHSSKVHSVGWSCDGRKLASGS 250
Y +H++ V +VG+ CD + + SGS
Sbjct: 74 YDSHTNNVMAVGFQCDAKWMYSGS 97
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,201,018
Number of Sequences: 28952
Number of extensions: 213416
Number of successful extensions: 706
Number of sequences better than 10.0: 97
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1112061928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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