Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060085.seq
         (677 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0194 + 1539847-1541533,1541650-1541730,1541773-1542335           31   0.64 
03_01_0480 - 3676529-3676687,3676767-3676931,3677044-3677220,367...    31   1.1  
11_06_0251 - 21707953-21708455,21709230-21710284,21711187-21711299     29   2.6  
04_04_0779 - 28023735-28024058,28024520-28024618,28024704-280249...    29   4.5  
12_01_0199 - 1467137-1467172,1467302-1467391,1468304-1468396,146...    28   7.9  

>11_01_0194 + 1539847-1541533,1541650-1541730,1541773-1542335
          Length = 776

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 14/21 (66%), Positives = 14/21 (66%)
 Frame = +3

Query: 147 LYDPAPVIQIAPGYGLAENFD 209
           LY PAPV   APGYG AE  D
Sbjct: 319 LYSPAPVCVCAPGYGRAEPSD 339


>03_01_0480 -
           3676529-3676687,3676767-3676931,3677044-3677220,
           3678170-3678273,3678700-3678843,3679831-3679898,
           3680059-3680162,3680759-3680767,3681572-3681657,
           3681918-3683373
          Length = 823

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = -1

Query: 521 NLVNAHFLQDGFLRQDTGRWATRV-GCCQIWDVGSAKAIAPCCAVLQLSVCRVQTAV*AT 345
           NL  A  L DG  R+D   W+  + GC +  D+G+A+ +   C V  L    V     A 
Sbjct: 132 NLGIAAALFDGRAREDAVAWSAMITGCARRGDIGAARDLFDECPVKDLVSWNVMITAYAK 191

Query: 344 R 342
           R
Sbjct: 192 R 192


>11_06_0251 - 21707953-21708455,21709230-21710284,21711187-21711299
          Length = 556

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = +3

Query: 339 PTRCSNSSLDPTHRQLKNCATRCNCFC*TYIPYLTTTDPCRPASSILAEESIL*KVRVDQ 518
           P R S++S+      ++ C   C+ FC   +P+    +  RP SSI+ E   L K  V +
Sbjct: 198 PVRISDNSVTAFVSIMRGCNNMCS-FC--IVPFTRGRERSRPVSSIVREVGELWKAGVKE 254

Query: 519 I 521
           +
Sbjct: 255 V 255


>04_04_0779 -
           28023735-28024058,28024520-28024618,28024704-28024940,
           28025227-28025334,28025427-28025486,28025813-28025888,
           28025984-28026144,28026374-28026436,28026543-28026630,
           28026872-28027612,28027695-28028239
          Length = 833

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +2

Query: 347 LLKQQFGPDTPTIEELRNKVQXXXXXXHPIFDNNRPVSPSVQYLGGGIHL 496
           +L  QFG     + +LR+K+       H  F ++  ++PS+    G  HL
Sbjct: 778 ILSPQFGKRLGNVFDLRDKLSPSERFTHHAFVDHVKLNPSLDLTSGSPHL 827


>12_01_0199 -
           1467137-1467172,1467302-1467391,1468304-1468396,
           1468488-1469515,1470005-1470552,1470656-1470695,
           1473774-1475196
          Length = 1085

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +3

Query: 147 LYDPAPVIQIAPGYGLAENFD 209
           LY PAPV   APGY  A+  D
Sbjct: 311 LYSPAPVCVCAPGYARADPSD 331


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,877,499
Number of Sequences: 37544
Number of extensions: 428748
Number of successful extensions: 1073
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1072
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)