Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060085.seq
         (677 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70311-5|CAA94378.2|  527|Caenorhabditis elegans Hypothetical pr...    41   0.001
AF022980-12|AAG24186.1|  515|Caenorhabditis elegans Hypothetical...    37   0.015
Z70782-8|CAA94845.2|  536|Caenorhabditis elegans Hypothetical pr...    34   0.11 
AF016654-6|AAB66026.1|  426|Caenorhabditis elegans Hypothetical ...    32   0.43 
Z81576-8|CAB76724.1|  440|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AL023837-4|CAB76749.1|  440|Caenorhabditis elegans Hypothetical ...    29   2.3  
Z83218-2|CAB05687.1|  705|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z48583-2|CAA88471.2|  595|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z50006-2|CAD44148.1|  523|Caenorhabditis elegans Hypothetical pr...    29   4.0  
U56966-6|ABS19472.1| 1558|Caenorhabditis elegans Vitellogenin st...    29   4.0  
U56966-5|AAA98720.1| 1613|Caenorhabditis elegans Vitellogenin st...    29   4.0  
Z36752-5|CAA85328.2|  533|Caenorhabditis elegans Hypothetical pr...    28   7.0  
AC006708-19|AAF60423.3|  588|Caenorhabditis elegans Mtm (myotubu...    28   7.0  

>Z70311-5|CAA94378.2|  527|Caenorhabditis elegans Hypothetical
           protein T25B9.7 protein.
          Length = 527

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = +2

Query: 341 NALLKQQFGPDTPTIEELRNKVQXXXXXXHPIFDNNRPVSPSVQYLGG 484
           N LL + FGP  P+ EE+   V       + I +  RPVS  ++Y+GG
Sbjct: 218 NNLLLETFGPTFPSAEEIERNVDIILVNSNEIIEKPRPVSHKIKYIGG 265


>AF022980-12|AAG24186.1|  515|Caenorhabditis elegans Hypothetical
           protein T03D3.1 protein.
          Length = 515

 Score = 36.7 bits (81), Expect = 0.015
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = +2

Query: 341 NALLKQQFGPDTPTIEELRNKVQXXXXXXHPIFDNNRPVSPSVQYLGG 484
           N L+ ++FG + P +  +   +       H   +  RP+SP ++Y+GG
Sbjct: 218 NNLITKRFGNNFPDVGTIERGIDIIFVNSHDFLEQQRPMSPKIKYIGG 265


>Z70782-8|CAA94845.2|  536|Caenorhabditis elegans Hypothetical
           protein R04B5.9 protein.
          Length = 536

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 17/67 (25%), Positives = 31/67 (46%)
 Frame = +2

Query: 284 NLMTEMRLYKEFKILANMSNALLKQQFGPDTPTIEELRNKVQXXXXXXHPIFDNNRPVSP 463
           NL+  + +   F    N   ++ +++FG D P I E+   V         I D + P  P
Sbjct: 207 NLLRGITINTFFYFSHNRLTSIFRKKFGDDFPAITEIVRNVDIIFLATDEIIDFSSPTLP 266

Query: 464 SVQYLGG 484
           ++ ++GG
Sbjct: 267 NLVHVGG 273


>AF016654-6|AAB66026.1|  426|Caenorhabditis elegans Hypothetical
           protein C17A2.2 protein.
          Length = 426

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = -1

Query: 557 FDLFIFASMTGLNLVNAHFLQDGFLRQDTGRWATRVGCCQIWDVGSAK 414
           +D  +     GL +V  H+L +  LR D  R    V  C IW  G +K
Sbjct: 206 YDSKVIDYYAGLGIVENHYLLEKGLRTDRHRHINEVVDCNIWSRGHSK 253


>Z81576-8|CAB76724.1|  440|Caenorhabditis elegans Hypothetical
           protein Y37H2C.3 protein.
          Length = 440

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +3

Query: 57  INVRNLIANNQTFDLVVVEAFADYALV-FGHLYDPAPVIQIAP 182
           I +R+++  + TF++ V+  F  Y L+  G  ++PA  I IAP
Sbjct: 368 IKIRDILMESSTFEVAVLN-FMHYNLIEIGQFFNPAFDISIAP 409


>AL023837-4|CAB76749.1|  440|Caenorhabditis elegans Hypothetical
           protein Y37H2C.3 protein.
          Length = 440

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +3

Query: 57  INVRNLIANNQTFDLVVVEAFADYALV-FGHLYDPAPVIQIAP 182
           I +R+++  + TF++ V+  F  Y L+  G  ++PA  I IAP
Sbjct: 368 IKIRDILMESSTFEVAVLN-FMHYNLIEIGQFFNPAFDISIAP 409


>Z83218-2|CAB05687.1|  705|Caenorhabditis elegans Hypothetical
           protein C31A11.5 protein.
          Length = 705

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 23/84 (27%), Positives = 34/84 (40%)
 Frame = -3

Query: 531 DRT*FGQRALFTRWIPPPRYWTLGDTGRLLSNMGCRFSKSNCTLLRSSSIVGVSGPNCCL 352
           D T F        WI  P Y+     G LL+  G R  + N  L  +  IV  S    C+
Sbjct: 475 DATHFYDMIYIKPWIRCPPYFVGILVGYLLATYGKRKLRLNWALAVTGWIVAFSLGALCI 534

Query: 351 SNALDMLAKILNSLYKRISVIKFA 280
            +  D   K+  S++ R +   F+
Sbjct: 535 FSTYDYDNKVKWSIFSRATYYNFS 558


>Z48583-2|CAA88471.2|  595|Caenorhabditis elegans Hypothetical
           protein F54B3.3 protein.
          Length = 595

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +3

Query: 480 AEESIL*KVRVDQIKSGHRRENEQVKKRSDLRKFWVEH 593
           AEE +  K R+ +     R++ E VKK+  LRK  +EH
Sbjct: 138 AEEELAMKARMQE--ESLRKQEESVKKQEQLRKQTIEH 173


>Z50006-2|CAD44148.1|  523|Caenorhabditis elegans Hypothetical
           protein T07C5.1c protein.
          Length = 523

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = +1

Query: 535 DAKMNKSKSGAIYVSFGSSIDTKSFANEFFYMLINTVXSVG*LHHIM 675
           D    K KSG+++VSFG+    +S        ++N +  +   H ++
Sbjct: 291 DDYFKKGKSGSVFVSFGTVTPFRSLPERIQLSILNAIQKLPDYHFVV 337


>U56966-6|ABS19472.1| 1558|Caenorhabditis elegans Vitellogenin
           structural genes (yolk protein genes) protein 2, isoform
           b protein.
          Length = 1558

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 621 KLVCKRFGVNARPKTYVNRSAF*LVHFRVDD 529
           K + ++  + ARP TY  + AF +V+ R  D
Sbjct: 748 KELAQKMNIRARPATYTEKDAFAMVYLRYKD 778


>U56966-5|AAA98720.1| 1613|Caenorhabditis elegans Vitellogenin
           structural genes (yolk protein genes) protein 2, isoform
           a protein.
          Length = 1613

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 621 KLVCKRFGVNARPKTYVNRSAF*LVHFRVDD 529
           K + ++  + ARP TY  + AF +V+ R  D
Sbjct: 748 KELAQKMNIRARPATYTEKDAFAMVYLRYKD 778


>Z36752-5|CAA85328.2|  533|Caenorhabditis elegans Hypothetical
           protein F35H8.6 protein.
          Length = 533

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = +2

Query: 356 QQFGPDTPTIEELRNKVQXXXXXXHPIFDNNRPVSPSVQYLG 481
           Q++ P   +  E+            PIFD +RP  P V ++G
Sbjct: 228 QKYYPGVESTFEIERNASINFVNTPPIFDFSRPYMPRVNFIG 269


>AC006708-19|AAF60423.3|  588|Caenorhabditis elegans Mtm
           (myotubularin) family protein 1 protein.
          Length = 588

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +1

Query: 487 NPSCKKCALTKLSPVIDAKMNKSKSG 564
           N +C++  +    P ++AK+NK+K G
Sbjct: 273 NANCRELLILDARPAVNAKLNKAKGG 298


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,808,181
Number of Sequences: 27780
Number of extensions: 368100
Number of successful extensions: 1059
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1059
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)