Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060085.seq
         (677 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    24   1.2  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    24   1.2  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    22   4.7  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    22   4.7  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   4.7  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   6.2  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   6.2  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   8.2  

>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
          protein.
          Length = 116

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 6/20 (30%), Positives = 16/20 (80%)
 Frame = +3

Query: 30 EMFKDQFDNINVRNLIANNQ 89
          E++ D++D +N+  ++AN++
Sbjct: 21 ELYSDKYDYVNIDEILANDR 40


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
          protein.
          Length = 116

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 6/20 (30%), Positives = 16/20 (80%)
 Frame = +3

Query: 30 EMFKDQFDNINVRNLIANNQ 89
          E++ D++D +N+  ++AN++
Sbjct: 21 ELYSDKYDYVNIDEILANDR 40


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/32 (28%), Positives = 12/32 (37%)
 Frame = +3

Query: 369 PTHRQLKNCATRCNCFC*TYIPYLTTTDPCRP 464
           P++     C  RC  FC   +P       C P
Sbjct: 38  PSNEIFSRCDGRCQRFCPNVVPKPLCIKICAP 69


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/32 (28%), Positives = 12/32 (37%)
 Frame = +3

Query: 369 PTHRQLKNCATRCNCFC*TYIPYLTTTDPCRP 464
           P++     C  RC  FC   +P       C P
Sbjct: 38  PSNEIFSRCDGRCQRFCPNVVPKPLCIKICAP 69


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +3

Query: 198 ENFDTVGAVARHPVHHPNIG 257
           E FD     +RHP+H+   G
Sbjct: 419 ERFDQDAMASRHPMHYLPFG 438


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
 Frame = +3

Query: 396 ATRCNCFC*TYIPYLTTTDPCRPASSILAEESIL*KV-RVDQIKSG 530
           A RCN        +L T   C PA  I  ++  L K+  VD   SG
Sbjct: 140 AERCNFKAYCLFSFLNTIVYCVPAGWIWGDQGFLKKLGAVDIAGSG 185


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 276 VSSKLLRQC*DGERGAAPRRLPCQSFPPNRSQ 181
           V+S L +Q     +GAA   LP   +P  RSQ
Sbjct: 236 VTSPLSQQQQAAPQGAASANLPSPLYPWMRSQ 267


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/26 (30%), Positives = 10/26 (38%)
 Frame = +3

Query: 336 CPTRCSNSSLDPTHRQLKNCATRCNC 413
           CP    +    P    +  C  RCNC
Sbjct: 455 CPYTLKHKIRVPPGTPIYECNKRCNC 480


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,674
Number of Sequences: 438
Number of extensions: 4251
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)