Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060084.seq
(493 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch... 142 3e-35
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc... 142 3e-35
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual 29 0.38
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 27 1.2
SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ... 27 1.5
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 27 2.0
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 26 2.7
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 2.7
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 25 4.7
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe... 25 4.7
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 4.7
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|... 25 4.7
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 25 4.7
SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual 25 6.2
SPCC417.11c |||glutamate-1-semialdehyde 2,1-aminomutaseaminotran... 25 6.2
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 25 8.2
SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8 |Schizo... 25 8.2
>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 142 bits (343), Expect = 3e-35
Identities = 61/75 (81%), Positives = 68/75 (90%)
Frame = +2
Query: 29 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 208
M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60
Query: 209 SSEALEAGRICCNKY 253
+SEALEA RIC NKY
Sbjct: 61 TSEALEAARICANKY 75
Score = 95.5 bits (227), Expect = 4e-21
Identities = 43/54 (79%), Positives = 47/54 (87%)
Frame = +1
Query: 256 VKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPXGTVARVS 417
VK GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFGKP G VARV+
Sbjct: 77 VKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVN 130
>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 221
Score = 142 bits (343), Expect = 3e-35
Identities = 61/75 (81%), Positives = 68/75 (90%)
Frame = +2
Query: 29 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 208
M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60
Query: 209 SSEALEAGRICCNKY 253
+SEALEA RIC NKY
Sbjct: 61 TSEALEAARICANKY 75
Score = 95.5 bits (227), Expect = 4e-21
Identities = 43/54 (79%), Positives = 47/54 (87%)
Frame = +1
Query: 256 VKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPXGTVARVS 417
VK GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFGKP G VARV+
Sbjct: 77 VKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVN 130
>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 405
Score = 29.1 bits (62), Expect = 0.38
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +2
Query: 53 YRYCKNKPYPKSRFCRGVPDP-KIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 229
Y+ N ++FC V + KI + +KRA +D LC+ +S + E ++ +LE+
Sbjct: 34 YQKVPNSHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLES 93
Query: 230 G 232
G
Sbjct: 94 G 94
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 27.5 bits (58), Expect = 1.2
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +2
Query: 110 DPKIRIFDLGKKRATVDDFPLCV-HLVSDEYEQLSSEALEA 229
DPK+R+F KRAT + C LV+ + + S +++A
Sbjct: 320 DPKLRVFPFTTKRATHSELLRCYKELVTPKISHVDSISIKA 360
>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 527
Score = 27.1 bits (57), Expect = 1.5
Identities = 29/86 (33%), Positives = 40/86 (46%)
Frame = +3
Query: 66 KINRIRNRGSVGVYLIPRSVSSIWVRRERPLTTFHCACTWCPTNMNS*AQRLWRQDVSAA 245
KI R+R+ SV + L S+S W R L H T + + A RL + VS
Sbjct: 340 KIKRLRSEPSVSLTL---SIS--WYERFEKL--MHAQNTMLRSAFSHVA-RLPMETVSQL 391
Query: 246 ISTRKELRKGSVPYPHETSPFPRYPH 323
+S E +P P ETSP P+ P+
Sbjct: 392 LSHYTETISQYLP-PSETSPIPKTPN 416
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 26.6 bits (56), Expect = 2.0
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 225 RQDVSAAISTRKELRKGSVPYPHET 299
+ +VSAA EL SVP+PH++
Sbjct: 320 KTNVSAAYEKPAELSSSSVPFPHKS 344
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 26.2 bits (55), Expect = 2.7
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 144 RERPLTTFHCACTWCPTNMNS 206
R RP +T H +CT+C + S
Sbjct: 459 RSRPDSTSHASCTYCVARLRS 479
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 26.2 bits (55), Expect = 2.7
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -2
Query: 423 PMRNTCYSTXRLAKRTTHPSLEPISSS 343
P +T +LAKR T PSL P S+
Sbjct: 950 PRSEPVSTTTKLAKRITQPSLSPARST 976
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 25.4 bits (53), Expect = 4.7
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = -1
Query: 229 CLQSL*AQLFIFVGHQVHAQWKVVNGRSLLTQIEDTDLG 113
CL L L + H++ ++W+ +N R LL + + + G
Sbjct: 940 CLLPLLPALLSELDHKLVSEWRRINDRGLLVEEDAEETG 978
>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 871
Score = 25.4 bits (53), Expect = 4.7
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -3
Query: 269 PQFFTGTYCSRYVLPPKPLSSAVHIRRTPSARTVES 162
P FTG +PP+P+ SA+ + SA ++E+
Sbjct: 498 PTKFTGGASESSSVPPRPIPSAMKGKAPASAISIEA 533
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.4 bits (53), Expect = 4.7
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 271 KDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMR 375
+D H+RM ++ FH IN MLS + D + MR
Sbjct: 859 EDNSHLRMSINSFH---INDMLSKSSRDNNRQLMR 890
>SPAC3A12.05c |taf2||TATA-binding protein associated factor
Taf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1174
Score = 25.4 bits (53), Expect = 4.7
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +3
Query: 96 VGVYLIPRSVSSIWV 140
+GVYLIP++ S +W+
Sbjct: 394 IGVYLIPKAWSDLWL 408
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.4 bits (53), Expect = 4.7
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 131 DLGKKRATVDDFPLCVHLVSDEYEQL 208
++ KKRA DD + +VS EYE L
Sbjct: 1033 EIEKKRAENDDLQSKLSVVSSEYENL 1058
>SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 450
Score = 25.0 bits (52), Expect = 6.2
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 189 PTNMNS*AQRLWRQDVSAAISTRKELRKGSVP 284
P N+ + A+ W + A TRK + K SVP
Sbjct: 282 PENLLTIARLAWNNVTAKANDTRKSITKFSVP 313
>SPCC417.11c |||glutamate-1-semialdehyde
2,1-aminomutaseaminotransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 435
Score = 25.0 bits (52), Expect = 6.2
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = -2
Query: 273 LSAVLYGYLLQQIRPASKAS--ELSCSYSSDTKCTHSGKSSTVALFLPKSKIRILGSGT 103
L+A +YG+ I+ A E+ S T C + + + FL KIR SGT
Sbjct: 78 LTAGIYGHSNPVIKKALMQGFDEIGISLGGTTTCELNYAEALKSRFLSIEKIRFCNSGT 136
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 24.6 bits (51), Expect = 8.2
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = +2
Query: 86 SRFCRGVPDPKIRIFDLGKKRATVDDFP-LCVHLVSDE 196
S FC PDPK K A DD P + H+ S++
Sbjct: 84 SFFCTTTPDPKTESPSFVKYNAHCDDHPEISGHVSSND 121
>SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 569
Score = 24.6 bits (51), Expect = 8.2
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 8/74 (10%)
Frame = -3
Query: 245 CSRYVLPP-KP-LSSAVHIRRTPSARTVESRQRS------LSSYPNRRYGSWDQVHPDRT 90
C++ + PP KP + SA+ S T E S LS +R+ +W P
Sbjct: 494 CAKKIQPPFKPSVESAIDTSNFDSEFTSEIPMDSVVADSHLSETVQQRFANWSYQRPTTI 553
Query: 89 SISDTVYFCSTGSI 48
SD + + GS+
Sbjct: 554 DTSDDINTIAPGSV 567
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,094,578
Number of Sequences: 5004
Number of extensions: 43887
Number of successful extensions: 136
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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