Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060084.seq
(493 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 132 1e-31
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 127 4e-30
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 112 1e-25
11_08_0094 - 28314681-28314747,28315264-28315353,28315589-283157... 30 1.2
05_01_0508 + 4242705-4242886,4243129-4243234,4246179-4246517 30 1.2
04_04_1108 + 30961600-30962013,30963131-30964465 28 3.5
06_03_1485 + 30462009-30462098,30462212-30462340,30462416-304625... 28 4.7
05_07_0337 - 29368823-29368863,29369011-29369104,29369231-293693... 28 4.7
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600... 27 6.2
02_05_0844 - 32144417-32144764,32145588-32145686,32146218-321464... 27 6.2
12_01_0831 - 7688342-7688772,7690678-7692610,7693142-7693915,769... 27 8.2
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 132 bits (319), Expect = 1e-31
Identities = 58/75 (77%), Positives = 64/75 (85%)
Frame = +2
Query: 29 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 208
MGRRPARCYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENV 60
Query: 209 SSEALEAGRICCNKY 253
SSEALEA RI CNKY
Sbjct: 61 SSEALEAARIACNKY 75
Score = 101 bits (243), Expect = 2e-22
Identities = 44/52 (84%), Positives = 48/52 (92%)
Frame = +1
Query: 259 KNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPXGTVARV 414
KN GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKP GT ARV
Sbjct: 78 KNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV 129
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 127 bits (307), Expect = 4e-30
Identities = 55/71 (77%), Positives = 61/71 (85%)
Frame = +2
Query: 41 PARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEA 220
P RCYR KNKPYPKSR+CRGVPDPKIRIFD+G+K+ + DDFPLCVHLVS E E +SSEA
Sbjct: 312 PVRCYRQIKNKPYPKSRYCRGVPDPKIRIFDVGQKKRSADDFPLCVHLVSWEKENVSSEA 371
Query: 221 LEAGRICCNKY 253
LEA RI CNKY
Sbjct: 372 LEAARIACNKY 382
Score = 94.7 bits (225), Expect = 4e-20
Identities = 41/52 (78%), Positives = 46/52 (88%)
Frame = +1
Query: 259 KNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPXGTVARV 414
K+ GKD FH+R+ HP+HV+RINKMLSCAGADRLQTGMRGAFGKP GT ARV
Sbjct: 385 KHAGKDAFHLRVCAHPYHVLRINKMLSCAGADRLQTGMRGAFGKPTGTCARV 436
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 112 bits (270), Expect = 1e-25
Identities = 50/73 (68%), Positives = 59/73 (80%)
Frame = +2
Query: 50 CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 229
CYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+F CVHLVS E E ++SEALEA
Sbjct: 4 CYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEA 63
Query: 230 GRICCNKYP*RTA 268
RI CNKY ++A
Sbjct: 64 ARIACNKYMTKSA 76
Score = 99 bits (238), Expect = 1e-21
Identities = 43/52 (82%), Positives = 48/52 (92%)
Frame = +1
Query: 259 KNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPXGTVARV 414
K+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKP GT ARV
Sbjct: 74 KSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV 125
>11_08_0094 -
28314681-28314747,28315264-28315353,28315589-28315725,
28317020-28317589
Length = 287
Score = 29.9 bits (64), Expect = 1.2
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = -3
Query: 269 PQFFTGTYCSRYVLPPKPLSSAVHIRRTPSARTVESRQRSLSSYPNRR 126
P+F+T ++C R + L +++ R AR + RQ S SS P+ +
Sbjct: 50 PRFYTCSFCQREFRSAQALGGHMNVHRRDRAR-LRQRQTSSSSSPSHQ 96
>05_01_0508 + 4242705-4242886,4243129-4243234,4246179-4246517
Length = 208
Score = 29.9 bits (64), Expect = 1.2
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Frame = -2
Query: 324 DADNVERVKSHADMELILSAVLYGYLLQQIR-----PASKASELSCSYSSDTKCTHSGKS 160
+ DN+ V AD L+++A +++Q + PA+ A+ C+ S TK H G+
Sbjct: 143 NCDNLPVVPLGADQPLVMAACKRAAVIKQQQQASSSPATAAAAAQCAVPSSTKAIHVGEE 202
Query: 159 STVA 148
+ ++
Sbjct: 203 AHIS 206
>04_04_1108 + 30961600-30962013,30963131-30964465
Length = 582
Score = 28.3 bits (60), Expect = 3.5
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = -3
Query: 269 PQFFTGTYCSRYVLPPKPLSSAVHIRRTPSARTVESRQRSLSS 141
P F+ C + PP PL++ V + P+A + S + +++S
Sbjct: 95 PGRFSCPLCGAEIAPPPPLAAVVSVVAPPAAIPITSNRPAMTS 137
>06_03_1485 +
30462009-30462098,30462212-30462340,30462416-30462520,
30462626-30462706,30462885-30463000,30463083-30463184,
30463298-30463417,30463678-30463748,30463805-30463899,
30464001-30464075,30464130-30464219,30464687-30464794
Length = 393
Score = 27.9 bits (59), Expect = 4.7
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Frame = -2
Query: 273 LSAVLYGYLLQ-----QIRPASKASELSCSYSSDTKCTHSGKSSTVALFLPKSKIRILGS 109
LSA ++G+ + QI P + L CS + SG S L+ P IL +
Sbjct: 10 LSAAVFGFFIGISFPVQITPQLQCGLLPCSSGDGANYSFSGSSMIGILWSPFRNTTILSN 69
Query: 108 GT 103
GT
Sbjct: 70 GT 71
>05_07_0337 -
29368823-29368863,29369011-29369104,29369231-29369347,
29369751-29369804,29369910-29370026,29370170-29370310,
29370402-29370820,29370906-29370934,29371287-29371354,
29371833-29371907
Length = 384
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/29 (44%), Positives = 21/29 (72%)
Frame = -2
Query: 276 ILSAVLYGYLLQQIRPASKASELSCSYSS 190
+L+A+L GY++ I AS++ ELS S+ S
Sbjct: 230 LLTALLSGYVVSTIEAASESWELSVSFIS 258
>10_08_0141 +
15159160-15159306,15159708-15159815,15159958-15160006,
15160067-15160182,15160358-15160399,15161026-15161442,
15162356-15162509,15162911-15162975,15163793-15163870,
15163951-15164061,15164227-15164271,15164677-15164850,
15165383-15166335,15166471-15166681,15167037-15167196,
15168786-15169174
Length = 1072
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +2
Query: 152 TVDDFPLC-VHLVSDEYEQLSSEALEAGRICC 244
T D P C +HL SD Y S E ++AG+ C
Sbjct: 587 TTDWNPRCDIHLKSDGYTNYSLETVQAGKQQC 618
>02_05_0844 -
32144417-32144764,32145588-32145686,32146218-32146410,
32147049-32147107,32147189-32147263,32147557-32147670,
32147776-32147895,32148204-32148216,32148421-32148512,
32149078-32149164,32149254-32149328,32149630-32149680,
32149852-32149947,32150135-32150221,32150312-32150368,
32150475-32150600,32150709-32150949,32151028-32151114,
32151260-32151637,32152847-32153187
Length = 912
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -3
Query: 170 VESRQRSLSSYPNRRYGSWDQVHPDRTSISDTVYFCSTG 54
+ S + + S GSW H D +++ DT+ CS+G
Sbjct: 758 MNSSNQQIGSPSEEDLGSWGH-HSDPSTVPDTILQCSSG 795
>12_01_0831 -
7688342-7688772,7690678-7692610,7693142-7693915,
7694019-7694142,7696084-7696189,7696346-7696532
Length = 1184
Score = 27.1 bits (57), Expect = 8.2
Identities = 28/86 (32%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
Frame = -3
Query: 284 WN*SFPQFFTGTYCS-RYVLPPKPLSSAVHIRRTP--SARTVESRQR--SLSSYPNRRYG 120
W+ + P F + R LP PLS + +P S R + SR R SLS P+RR
Sbjct: 257 WHSNVPGFSHDAPANLRTSLPDHPLSHSRGGSPSPPISGRDMGSRGRRQSLSPTPSRRAS 316
Query: 119 SWDQVHPDRTSISDTVYFCSTGSISL 42
S + DR S S+G L
Sbjct: 317 SSHSIERDRLSSYSKASATSSGEDDL 342
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,626,038
Number of Sequences: 37544
Number of extensions: 322475
Number of successful extensions: 886
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -