Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060084.seq
         (493 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY823259-1|AAX18444.1|  194|Anopheles gambiae pburs protein.           23   7.5  
AJ439353-5|CAD27927.1|  459|Anopheles gambiae putative G-protein...    23   7.5  
U50468-1|AAA93472.1|   91|Anopheles gambiae protein ( Anopheles ...    22   9.9  
AF080564-1|AAC31944.1|  372|Anopheles gambiae Sex combs reduced ...    22   9.9  
AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcript...    22   9.9  

>AY823259-1|AAX18444.1|  194|Anopheles gambiae pburs protein.
          Length = 194

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +2

Query: 152 TVDDFPLCVHLVSDEYEQL 208
           T +  P  +HL+ +EY++L
Sbjct: 84  TCETLPSEIHLIKEEYDEL 102


>AJ439353-5|CAD27927.1|  459|Anopheles gambiae putative G-protein
           coupled receptor protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 430 PSCSCALVXXGRXRSXRLCT 489
           PSCSC +V     ++  LCT
Sbjct: 234 PSCSCWVVRIPIGKTYSLCT 253


>U50468-1|AAA93472.1|   91|Anopheles gambiae protein ( Anopheles
           gambiae putativetubulin alpha chain mRNA, complete cds.
           ).
          Length = 91

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -1

Query: 109 RYTPTEPRFRIRFIFAVPVASRWPAP 32
           R TP+ PR        VP +S W  P
Sbjct: 48  RSTPSSPRLAQASTCPVPCSSIWSRP 73


>AF080564-1|AAC31944.1|  372|Anopheles gambiae Sex combs reduced
           homeotic protein protein.
          Length = 372

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 249 LLQQIRPASKASELSCSYSSDTKCT 175
           L QQ +P S  +  SC Y+S+   T
Sbjct: 111 LSQQQQPQSALTSQSCKYASEGPST 135


>AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1209

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 113  PKIRIFDLGKKRATVD 160
            P I +++  KKRAT+D
Sbjct: 1103 PDILVYEKRKKRATID 1118


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 547,313
Number of Sequences: 2352
Number of extensions: 11401
Number of successful extensions: 18
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 43554477
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)