Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060084.seq
(493 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C) cont... 132 2e-31
At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) / Wi... 132 2e-31
At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Near... 131 2e-31
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 27 5.2
At1g53180.1 68414.m06027 expressed protein 27 6.9
At1g19510.1 68414.m02430 myb family transcription factor contain... 27 9.1
>At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C)
contains Pfam profile: PF00826: Ribosomal L10
Length = 221
Score = 132 bits (318), Expect = 2e-31
Identities = 59/80 (73%), Positives = 66/80 (82%)
Frame = +2
Query: 29 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 208
MGRRPARCYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
Query: 209 SSEALEAGRICCNKYP*RTA 268
SSEALEA RI CNKY ++A
Sbjct: 61 SSEALEAARIACNKYMVKSA 80
Score = 98.7 bits (235), Expect = 2e-21
Identities = 43/54 (79%), Positives = 49/54 (90%)
Frame = +1
Query: 256 VKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPXGTVARVS 417
VK+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK GT ARV+
Sbjct: 77 VKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVA 130
>At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) /
Wilm's tumor suppressor protein-related similar to tumor
suppressor GI:575354 from [Oryza sativa]
Length = 220
Score = 132 bits (318), Expect = 2e-31
Identities = 59/80 (73%), Positives = 66/80 (82%)
Frame = +2
Query: 29 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 208
MGRRPARCYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
Query: 209 SSEALEAGRICCNKYP*RTA 268
SSEALEA RI CNKY ++A
Sbjct: 61 SSEALEAARIACNKYMVKSA 80
Score = 98.7 bits (235), Expect = 2e-21
Identities = 43/54 (79%), Positives = 49/54 (90%)
Frame = +1
Query: 256 VKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPXGTVARVS 417
VK+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK GT ARV+
Sbjct: 77 VKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVA 130
>At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Nearly
identical to ribosomal protein L10.e, Wilm's tumor
suppressor homologue, gi|17682 (Z15157), however
differences in sequence indicate this is a different
member of the L10 family
Length = 221
Score = 131 bits (317), Expect = 2e-31
Identities = 59/80 (73%), Positives = 66/80 (82%)
Frame = +2
Query: 29 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 208
MGRRPARCYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWEKENV 60
Query: 209 SSEALEAGRICCNKYP*RTA 268
SSEALEA RI CNKY ++A
Sbjct: 61 SSEALEAARIACNKYMVKSA 80
Score = 98.7 bits (235), Expect = 2e-21
Identities = 43/54 (79%), Positives = 49/54 (90%)
Frame = +1
Query: 256 VKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPXGTVARVS 417
VK+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK GT ARV+
Sbjct: 77 VKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVA 130
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 27.5 bits (58), Expect = 5.2
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -3
Query: 137 PNRRYG-SWDQVHPDRTSISDTVYFCSTGSISLAGAP 30
PN R+G S+D +PD + D VY G +L P
Sbjct: 53 PNHRFGVSYDDGYPDERLMRDDVYNYPPGHNTLGDLP 89
>At1g53180.1 68414.m06027 expressed protein
Length = 358
Score = 27.1 bits (57), Expect = 6.9
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 38 RPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGK 142
R +R RYC + PYP S P+ K+ D+GK
Sbjct: 27 RRSRGLRYCHSDPYPSSSSTSTSPE-KMGDSDIGK 60
>At1g19510.1 68414.m02430 myb family transcription factor contains
PFAM profile: PF00249 myb-like DNA binding domain
Length = 100
Score = 26.6 bits (56), Expect = 9.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 104 VPDPKIRIFDLGKKRATVDDFPL 172
VP PK + D+G K +DDF L
Sbjct: 69 VPLPKYKTVDVGSKSRGIDDFDL 91
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,263,330
Number of Sequences: 28952
Number of extensions: 242077
Number of successful extensions: 723
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 858708096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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