Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060083.seq
         (679 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.05 |sap62||zinc finger protein Sap62|Schizosaccharomyce...    88   1e-18
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ...    30   0.27 
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha...    26   5.8  

>SPBC21C3.05 |sap62||zinc finger protein Sap62|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 88.2 bits (209), Expect = 1e-18
 Identities = 53/144 (36%), Positives = 71/144 (49%), Gaps = 6/144 (4%)
 Frame = +3

Query: 255 YFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQXXXXXXXXXXXXXXXXXXXP----- 419
           Y MKNHLG++EC+LCLT H NE SYL HTQGKKHQ                         
Sbjct: 45  YLMKNHLGTFECRLCLTTHANENSYLTHTQGKKHQTNLARRQALENKKSQENAPQVLLGI 104

Query: 420 EKPRIEPKK-FVKIGRPGYRVTKQXDPETGHRACSSK*IIQRLQRVLYLDIDLCLLMXRR 596
            +  ++ KK  VKIGRPGY+V+K  + E+G      +     ++        +     +R
Sbjct: 105 SQSHVQVKKSVVKIGRPGYKVSKIREAESGKFGLRFQIKYPDIEVNAKPRYRIMSAYEQR 164

Query: 597 LSLQTADGQYXLFAAEPYETIALK 668
           +       QY + AAEPYE+IA K
Sbjct: 165 VEAPDRKFQYLVVAAEPYESIAFK 188



 Score = 70.1 bits (164), Expect = 3e-13
 Identities = 33/48 (68%), Positives = 39/48 (81%)
 Frame = +1

Query: 124 MDFQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPIL*K 267
           MD+QNR G + GGGGVA + E+N  RRERLR+LALETIDL+KDP L K
Sbjct: 1   MDYQNRAGVRFGGGGVAGYQETNAARRERLRKLALETIDLSKDPYLMK 48



 Score = 48.8 bits (111), Expect = 7e-07
 Identities = 20/52 (38%), Positives = 31/52 (59%)
 Frame = +2

Query: 515 LLFQVDYPEIAEGVIPRHRFMSAYXQKIEPPDRRWAVFXICSRAL*NYCFKV 670
           L FQ+ YP+I     PR+R MSAY Q++E PDR++    + +    +  FK+
Sbjct: 138 LRFQIKYPDIEVNAKPRYRIMSAYEQRVEAPDRKFQYLVVAAEPYESIAFKI 189


>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 463

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 15/53 (28%), Positives = 29/53 (54%)
 Frame = +3

Query: 201 AGEITTACTRNNRFKQRSYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQ 359
           AG+I +   +N   ++++ F +N      C++C     +EG+Y +H   KKH+
Sbjct: 49  AGKILSIQKQNEEVQKKAEFYQN------CEVCNKKFYSEGAYSSHMASKKHR 95


>SPBC776.09 |ste13||ATP-dependent RNA helicase
           Ste13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 136 NRPGGKTGGGGVASWSESNRDRRERLRQLA 225
           NR G   GGG    + +SNR  R R +Q A
Sbjct: 455 NRGGHPRGGGNRGGYRQSNRQPRYRGQQKA 484


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,366,365
Number of Sequences: 5004
Number of extensions: 41861
Number of successful extensions: 78
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)