Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060083.seq
(679 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863... 104 8e-23
03_06_0561 + 34728428-34728439,34728529-34728615,34728729-347287... 32 0.37
04_01_0030 - 376883-377524 30 1.5
02_04_0060 - 19345316-19345453,19345718-19345849,19345937-193460... 30 2.0
09_04_0154 - 15180921-15181811,15181986-15182070,15182205-15182419 28 6.0
04_03_0816 + 19992641-19993197,19994933-19995023,19997761-19998051 28 6.0
01_05_0484 - 22621614-22621676,22621798-22621911,22622006-226224... 28 6.0
04_03_0833 + 20147242-20147849,20147937-20148081,20148157-201482... 28 7.9
>03_02_0455 -
8630543-8630893,8630994-8631068,8631149-8631223,
8631332-8631397,8631891-8631967,8632659-8633070
Length = 351
Score = 104 bits (249), Expect = 8e-23
Identities = 55/132 (41%), Positives = 69/132 (52%)
Frame = +3
Query: 273 LGSYECKLCLTLHNNEGSYLAHTQGKKHQXXXXXXXXXXXXXXXXXXXPEKPRIEPKKFV 452
+ SYECKLCLTLHNNEG+YLAHTQGK+HQ P K + P+K V
Sbjct: 79 VSSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKDAPAQPQPNKRKFAPRKSV 138
Query: 453 KIGRPGYRVTKQXDPETGHRACSSK*IIQRLQRVLYLDIDLCLLMXRRLSLQTADGQYXL 632
KIGRPGY+VTKQ DP+ + + ++ +++ QY L
Sbjct: 139 KIGRPGYQVTKQYDPDMKQHSFLFEIGYPEIEENSKPRHRFMASYEQKVESWDKKYQYLL 198
Query: 633 FAAEPYETIALK 668
FAAEPYE I K
Sbjct: 199 FAAEPYEIIGFK 210
Score = 52.0 bits (119), Expect = 4e-07
Identities = 23/55 (41%), Positives = 33/55 (60%)
Frame = +2
Query: 512 SLLFQVDYPEIAEGVIPRHRFMSAYXQKIEPPDRRWAVFXICSRAL*NYCFKVPS 676
S LF++ YPEI E PRHRFM++Y QK+E D+++ + FK+PS
Sbjct: 159 SFLFEIGYPEIEENSKPRHRFMASYEQKVESWDKKYQYLLFAAEPYEIIGFKIPS 213
Score = 50.8 bits (116), Expect = 1e-06
Identities = 25/37 (67%), Positives = 26/37 (70%)
Frame = +1
Query: 145 GGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDP 255
G K G GG AS DRRERLR+LALETIDL KDP
Sbjct: 6 GSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDP 42
>03_06_0561 +
34728428-34728439,34728529-34728615,34728729-34728750,
34728843-34728925,34729139-34729171,34729468-34729546,
34729642-34729694,34729931-34729991,34730168-34730250,
34730418-34730513
Length = 202
Score = 32.3 bits (70), Expect = 0.37
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 282 YECKLCLTLHNNEGSYLAHTQGKKHQ 359
Y CK+C + + +YL H GKKHQ
Sbjct: 82 YYCKVCECVVKDSANYLDHINGKKHQ 107
>04_01_0030 - 376883-377524
Length = 213
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +1
Query: 139 RPGGKTGGGGVASWSESNRDRRERLRQLALE 231
R GG GG V +++ RD ERLRQ A E
Sbjct: 106 RSGGGGRGGAVGDCADTLRDAEERLRQSAAE 136
>02_04_0060 -
19345316-19345453,19345718-19345849,19345937-19346005,
19346453-19346551,19346702-19346786,19346890-19346990,
19347294-19347362,19347635-19347675,19348343-19348458,
19348546-19348702,19349266-19349474,19349811-19349914,
19350234-19350381,19350463-19350761,19350844-19351377
Length = 766
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 127 DFQNRPGGKTGGGGVASWSESNRDRRERLRQLAL 228
D +RP G +GGGG SW++ + + LAL
Sbjct: 105 DPADRPAGSSGGGGSKSWAQQAEEAYQLQLALAL 138
>09_04_0154 - 15180921-15181811,15181986-15182070,15182205-15182419
Length = 396
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +3
Query: 270 HLGSYECKLCLTLHNNEGSYLAHTQGKKHQ 359
H + C +C N E + H +GK+HQ
Sbjct: 157 HAARWSCSVCQVHCNGEWHFDTHLKGKRHQ 186
>04_03_0816 + 19992641-19993197,19994933-19995023,19997761-19998051
Length = 312
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +1
Query: 136 NRPGGKT--GGGGVASWSESNRDRRERLRQLAL 228
N P G GGG A W R RR+R++++ L
Sbjct: 104 NEPAGTALAGGGASAGWLVGRRRRRQRVQEVRL 136
>01_05_0484 -
22621614-22621676,22621798-22621911,22622006-22622453,
22623052-22623179,22623747-22623821,22623954-22624040
Length = 304
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 288 CKLCLTLHNNEGSYLAHTQGKKHQ 359
C LC T ++ + L+H GKKH+
Sbjct: 96 CSLCKTTTTSKQTLLSHADGKKHR 119
>04_03_0833 +
20147242-20147849,20147937-20148081,20148157-20148210,
20148297-20148388,20148957-20149093,20149210-20149464,
20149598-20149771,20149863-20149960
Length = 520
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 133 QNRPGGKTGGGGVASWSESNRDRRERLRQLALETI 237
+ R GG GGGGVA+ S R RE A+ ++
Sbjct: 55 KGRGGGGGGGGGVAAGSSEYRKDREEWTDGAISSL 89
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,328,005
Number of Sequences: 37544
Number of extensions: 272336
Number of successful extensions: 798
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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