Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060083.seq
(679 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68297-1|CAA92593.2| 222|Caenorhabditis elegans Hypothetical pr... 132 2e-31
U52000-2|AAK68677.1| 529|Caenorhabditis elegans Vang (van gogh/... 30 1.7
U52000-1|AAA96091.1| 532|Caenorhabditis elegans Vang (van gogh/... 30 1.7
AC024877-2|AAF60905.2| 608|Caenorhabditis elegans Hypothetical ... 30 1.7
U70850-3|AAB09122.3| 596|Caenorhabditis elegans Zinc finger plu... 29 3.0
AY289599-1|AAP43944.1| 596|Caenorhabditis elegans ZAG-1 protein. 29 3.0
AY224511-1|AAP37457.1| 596|Caenorhabditis elegans ZAG-1 protein. 29 3.0
Z93393-5|CAB07690.1| 611|Caenorhabditis elegans Hypothetical pr... 27 9.3
>Z68297-1|CAA92593.2| 222|Caenorhabditis elegans Hypothetical
protein F11A10.2 protein.
Length = 222
Score = 132 bits (320), Expect = 2e-31
Identities = 66/138 (47%), Positives = 80/138 (57%)
Frame = +3
Query: 255 YFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQXXXXXXXXXXXXXXXXXXXPEKPRI 434
YFM+NH+G+YECKLCLTLHNNEGSYLAHTQGKKHQ P+K +
Sbjct: 45 YFMRNHIGTYECKLCLTLHNNEGSYLAHTQGKKHQANLARRAAKEQSEQPFLPAPQKAAV 104
Query: 435 EPKKFVKIGRPGYRVTKQXDPETGHRACSSK*IIQRLQRVLYLDIDLCLLMXRRLSLQTA 614
E KKFVKIGRPGY+VTK+ DP G +A + + + +++
Sbjct: 105 ETKKFVKIGRPGYKVTKERDPGAGQQALLFQIDYPEIADGIAPRHRFMSAYEQKIQPPDK 164
Query: 615 DGQYXLFAAEPYETIALK 668
QY LFAAEPYETI K
Sbjct: 165 RWQYLLFAAEPYETIGFK 182
Score = 81.8 bits (193), Expect = 4e-16
Identities = 34/57 (59%), Positives = 42/57 (73%)
Frame = +2
Query: 509 QSLLFQVDYPEIAEGVIPRHRFMSAYXQKIEPPDRRWAVFXICSRAL*NYCFKVPSR 679
Q+LLFQ+DYPEIA+G+ PRHRFMSAY QKI+PPD+RW + FK+PSR
Sbjct: 130 QALLFQIDYPEIADGIAPRHRFMSAYEQKIQPPDKRWQYLLFAAEPYETIGFKIPSR 186
Score = 74.9 bits (176), Expect = 5e-14
Identities = 35/44 (79%), Positives = 38/44 (86%)
Frame = +1
Query: 124 MDFQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDP 255
MDFQNR GGKTG GGVAS +++ DRRERLRQLALETIDL KDP
Sbjct: 1 MDFQNRAGGKTGSGGVASAADAGVDRRERLRQLALETIDLQKDP 44
>U52000-2|AAK68677.1| 529|Caenorhabditis elegans Vang (van
gogh/strabismus planarpolarity protein) homolog protein
1, isoform b protein.
Length = 529
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 539 EIAEGVIPRHRFMSAYXQKIEPPDRRWA 622
EI E IPR +++ QKI PP+ WA
Sbjct: 37 EIGEPFIPRFSAIASEGQKIAPPNEDWA 64
>U52000-1|AAA96091.1| 532|Caenorhabditis elegans Vang (van
gogh/strabismus planarpolarity protein) homolog protein
1, isoform a protein.
Length = 532
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 539 EIAEGVIPRHRFMSAYXQKIEPPDRRWA 622
EI E IPR +++ QKI PP+ WA
Sbjct: 37 EIGEPFIPRFSAIASEGQKIAPPNEDWA 64
>AC024877-2|AAF60905.2| 608|Caenorhabditis elegans Hypothetical
protein Y95B8A.7 protein.
Length = 608
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +3
Query: 264 KNHLGSYECKLCLTLHNNEGSYLAHTQGKKH 356
KN L SY C LC + +Y AH +G KH
Sbjct: 13 KNKL-SYRCDLCDVTCTGQDTYSAHVRGGKH 42
>U70850-3|AAB09122.3| 596|Caenorhabditis elegans Zinc finger plus
homeodomain, axonguidance protein 1 protein.
Length = 596
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +3
Query: 222 CTRNNRFKQR-SYFMKNHLGS--YECKLCLTLHNNEGSYLAHTQGKK 353
CT+ +FK ++ H G +EC+ C ++ GSY +H KK
Sbjct: 29 CTKAFKFKHHLKEHIRIHSGEKPFECQQCHKRFSHSGSYSSHMSSKK 75
>AY289599-1|AAP43944.1| 596|Caenorhabditis elegans ZAG-1 protein.
Length = 596
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +3
Query: 222 CTRNNRFKQR-SYFMKNHLGS--YECKLCLTLHNNEGSYLAHTQGKK 353
CT+ +FK ++ H G +EC+ C ++ GSY +H KK
Sbjct: 29 CTKAFKFKHHLKEHIRIHSGEKPFECQQCHKRFSHSGSYSSHMSSKK 75
>AY224511-1|AAP37457.1| 596|Caenorhabditis elegans ZAG-1 protein.
Length = 596
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +3
Query: 222 CTRNNRFKQR-SYFMKNHLGS--YECKLCLTLHNNEGSYLAHTQGKK 353
CT+ +FK ++ H G +EC+ C ++ GSY +H KK
Sbjct: 29 CTKAFKFKHHLKEHIRIHSGEKPFECQQCHKRFSHSGSYSSHMSSKK 75
>Z93393-5|CAB07690.1| 611|Caenorhabditis elegans Hypothetical
protein Y48E1B.4 protein.
Length = 611
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +1
Query: 130 FQNRPGGKTGGGGVASWSESNRDRRERLRQLALE 231
F+N GG+ GGG + W+ + R +R+ L ++E
Sbjct: 112 FENS-GGENGGGILKIWTVNERSKRKMLECFSVE 144
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,133,057
Number of Sequences: 27780
Number of extensions: 239662
Number of successful extensions: 610
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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