Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060082.seq
         (675 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292352-1|CAL23164.1|  250|Tribolium castaneum gustatory recept...    23   1.7  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    22   4.0  
AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    22   4.0  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   5.3  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    22   5.3  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    21   7.0  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   9.2  
AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    21   9.2  

>AM292352-1|CAL23164.1|  250|Tribolium castaneum gustatory receptor
           candidate 31 protein.
          Length = 250

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +2

Query: 512 EFLKHSQVYELYPNKFLTLDESRVYVLNTLFNLPETYLIACLIDFFTN 655
           E LK+++V      K L  +  R+Y L+ L +   +Y+I  ++ F TN
Sbjct: 128 EMLKNARVKNTALWKQLRYEHYRLYQLSVLIDNNMSYII--IVSFATN 173


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 411 DPSFPVRGLWFDTLYGNLLKVDAYGNIL 494
           +P FP RG+  DT   N + V++   +L
Sbjct: 235 NPIFPYRGIMLDTA-RNYMSVESIRRVL 261


>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -2

Query: 242 ILCSTRR*YFLDIIFLS*RVRHSFSLQTSILN 147
           I+C   R     ++  + ++RH F L+T +LN
Sbjct: 255 IMCDCVRSEASKVVKNAQKLRHKFDLKTLVLN 286


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 652 REEIYEARNQIGFRQVKQS 596
           REEI    N +GF +VK++
Sbjct: 613 REEIKRLDNGVGFLKVKEN 631


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 14  RIVKILFHKFASGTVLNKNSACSDVL 91
           R+V+I+  KF+S  +  K S C  V+
Sbjct: 196 RMVQIIHKKFSSIQMQLKQSTCEAVM 221


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +3

Query: 414 PSFPVRGLWFDTLYGNLLKVDAYGNIL--VCVHGLNF*NIH 530
           P FP RG+  DT   N   VD    ++  + +  LN  ++H
Sbjct: 214 PKFPYRGVMIDTA-RNFFPVDLIRKVVDGMAMAKLNVLHLH 253


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -3

Query: 475 STLSKFPYNVSNQRPLTGNEGSYSNSNI 392
           S+  + P +  NQ+ L  N    SN N+
Sbjct: 101 SSTPESPEHYYNQKTLQANNNDASNGNL 128


>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory receptor
           candidate 1 protein.
          Length = 373

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 12/55 (21%), Positives = 20/55 (36%)
 Frame = -1

Query: 240 SVFNTTIVFLGHNIFILKSQALVFLTNIHFKFRIKNYVKSLIIVYFQKIYSTSEH 76
           +VFN    +L   + ++     V L     K  +KN+          KI +   H
Sbjct: 174 TVFNVAQCYLTTELVLMLQTRFVILNKQLTKITVKNFATKTQSAVLGKICTLHHH 228


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,888
Number of Sequences: 336
Number of extensions: 3757
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17593745
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)