Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060082.seq
         (675 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces ...    27   1.9  
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar...    27   2.5  
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    26   4.3  
SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schiz...    26   4.3  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    25   7.6  
SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit L3|S...    25   10.0 
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    25   10.0 
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid...    25   10.0 

>SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 306

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 196 KNIMSK-KYYRRVEHRIFVNSRCI*KMLNFTVLIWTIHW 309
           KN+ S   ++R V  R+    R I  ++NF ++I  +HW
Sbjct: 81  KNVFSSASFFREVSVRMVYYVRYIQWLINFPLIIVMLHW 119


>SPMIT.02 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 384

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 17/68 (25%), Positives = 29/68 (42%)
 Frame = -1

Query: 618 VSGRLNKVFRT*TLDSSKVKNLFGYNSYTCECFKNSNHVHTLKYSRRHRL*ANFHITYQT 439
           +  + N +    +L +S  + +   +SY   CFK    +    +SR  R   NF    + 
Sbjct: 304 IKSKKNSLITNYSLSTSSKERMLFLSSYFENCFKGVKSLEFKIWSRSLRKNYNFEQLLRA 363

Query: 438 RDLSLETK 415
           RDL  + K
Sbjct: 364 RDLIRKLK 371


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1207

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
 Frame = -1

Query: 291 QNRKI*HFLNATTVNEN--SVFNTTIVFLG-HNIFILKSQALVFLTNIHFKFRIKN--YV 127
           Q +KI    NA  V     S  N+    LG H ++I+K   L  +T+IH   RIK+  +V
Sbjct: 485 QQKKIVSSFNANRVKYVVWSNDNSQAALLGKHYVYIVKKN-LELITSIHETIRIKSAVWV 543

Query: 126 KSLIIVY 106
           ++ +++Y
Sbjct: 544 ENNVLLY 550


>SPAC16E8.10c |||mitochondrial ribosomal protein subunit
           S7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 564 VKNLFGYNSYTCECFKNSNHVHTL 493
           VK +    S T  CFK  +H+H +
Sbjct: 224 VKEIIAIRSKTSNCFKKKDHLHRM 247


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +1

Query: 91  INFLKINNYQRLNIIFNSKFKMDVCKENECLTLQDKNI 204
           + FLK N +   NII  +  K D   E   LTL++ NI
Sbjct: 233 LEFLKTNMWAYANIISTACVKDDESCEKIRLTLENTNI 270


>SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit
           L3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 326

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 17/69 (24%), Positives = 31/69 (44%)
 Frame = +2

Query: 461 FAQSRCLREYFSVCTWFEFLKHSQVYELYPNKFLTLDESRVYVLNTLFNLPETYLIACLI 640
           F +S  +++Y  V  W+     S +  +  +K      S+VY L     LPE+Y +  L+
Sbjct: 11  FRRSISMKDYARV-RWYSNSGKSLIENILSSKIAI---SKVYTLKKRIGLPESYPMKVLV 66

Query: 641 DFFTNFTPI 667
               + T +
Sbjct: 67  QALIDKTVV 75


>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -3

Query: 394 ISLGYPLTTNLSLVKLNPNVSYCG 323
           IS   PL   L   +LNP   YCG
Sbjct: 423 ISYSLPLVCRLLFNRLNPGKFYCG 446


>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
           peptidyl-prolyl cis-trans isomerase
           Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 610

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 433 PLTGNEGSYSNSNISLG 383
           P+T NEG   N NI LG
Sbjct: 438 PVTNNEGRQENGNILLG 454


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,848,297
Number of Sequences: 5004
Number of extensions: 60591
Number of successful extensions: 165
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)