Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060082.seq
(675 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0129 - 31883732-31883854,31883989-31884051,31884213-318842... 82 5e-16
12_01_0513 + 4059586-4059620,4060155-4060365,4060470-4060724,406... 78 7e-15
09_04_0174 + 15346123-15346207,15346350-15346502,15346623-153467... 76 3e-14
01_01_1049 + 8275837-8275859,8276428-8276503,8276545-8276634,827... 39 0.003
05_07_0284 - 28943527-28943625,28944417-28944785 30 1.5
08_02_0890 + 22309061-22309086,22309172-22309253,22309349-223094... 28 7.8
>03_06_0129 -
31883732-31883854,31883989-31884051,31884213-31884272,
31884724-31884784,31884934-31885004,31885313-31885389,
31885856-31885913,31885995-31886048,31886279-31886297,
31886359-31886466,31886574-31886690,31886836-31886919,
31887079-31887171,31887279-31887499,31888294-31888371,
31889237-31889499,31890109-31890247
Length = 562
Score = 81.8 bits (193), Expect = 5e-16
Identities = 39/87 (44%), Positives = 57/87 (65%), Gaps = 1/87 (1%)
Frame = +3
Query: 252 QSLHLENVKFYGFDMDYTLAEYKSPQYETLGFNLTKERLVVK-GYPREILEFEYDPSFPV 428
+SL++ N+ GFDMDYTLA+YK +E L ++ T E+LV GYP E+L +++D + V
Sbjct: 87 RSLNMRNITAVGFDMDYTLAQYKPETFEALAYHGTIEKLVKDLGYPEELLTWQFDWKYMV 146
Query: 429 RGLWFDTLYGNLLKVDAYGNILVCVHG 509
RGL D GN+LK+D + + V HG
Sbjct: 147 RGLVLDKKRGNILKMDRHKYVKVAYHG 173
Score = 31.9 bits (69), Expect = 0.48
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +2
Query: 563 TLDESRVYVLNTLFNLPETYLIACLIDFFTN 655
+ DE +++TLF+L E YL A L+DF N
Sbjct: 194 SFDEPDYALIDTLFSLGEAYLFAQLVDFMDN 224
>12_01_0513 +
4059586-4059620,4060155-4060365,4060470-4060724,
4060801-4060865,4061120-4061194,4061440-4061575,
4061661-4061753,4061838-4061983,4062074-4062174,
4062259-4062434,4063823-4063900,4063991-4064199,
4064286-4064378,4064888-4064971,4065405-4065506,
4065591-4065678,4065756-4065809,4065869-4066075,
4066970-4067026,4067171-4067225,4067737-4067813,
4067941-4068007,4068383-4068444,4068541-4068603,
4068702-4068830
Length = 905
Score = 77.8 bits (183), Expect = 7e-15
Identities = 38/93 (40%), Positives = 58/93 (62%)
Frame = +3
Query: 237 QNFR*QSLHLENVKFYGFDMDYTLAEYKSPQYETLGFNLTKERLVVKGYPREILEFEYDP 416
Q F +++++E++K GF M+YTL YK +E L + K+RLV YP +ILE+ Y+
Sbjct: 381 QIFCSRTVNMEDIKAIGFKMEYTLINYKVT-FENLAYVEAKKRLVNGKYPEKILEWNYNS 439
Query: 417 SFPVRGLWFDTLYGNLLKVDAYGNILVCVHGLN 515
+RGL D GN++KVD Y N+ + HG+N
Sbjct: 440 EHMIRGLIIDKKKGNIIKVDHYNNVKMSYHGMN 472
>09_04_0174 +
15346123-15346207,15346350-15346502,15346623-15346759,
15346856-15347005,15347405-15347506,15347832-15347996,
15348402-15348499,15348704-15348827,15349056-15349145,
15349555-15349599,15350438-15350833
Length = 514
Score = 75.8 bits (178), Expect = 3e-14
Identities = 36/81 (44%), Positives = 57/81 (70%), Gaps = 1/81 (1%)
Frame = +3
Query: 252 QSLHLENVKFYGFDMDYTLAEYKSPQYETLGFNLTKERLVVK-GYPREILEFEYDPSFPV 428
+++ L++++ YGFD DYTL+ Y S + L ++L K+ LV + YP L++EYD FP+
Sbjct: 85 KNVKLDDLQVYGFDYDYTLSHY-SEHLQCLIYDLAKKHLVNELKYPESCLKYEYDHGFPI 143
Query: 429 RGLWFDTLYGNLLKVDAYGNI 491
RGL++D L G LLK+D +G+I
Sbjct: 144 RGLYYDRLKGCLLKLDFFGSI 164
>01_01_1049 +
8275837-8275859,8276428-8276503,8276545-8276634,
8276721-8276836,8276918-8277017,8277808-8277879,
8277954-8278001,8278093-8278170,8278272-8278391,
8278496-8278601,8279574-8279737,8280403-8280537,
8280766-8280896,8282016-8282094,8282284-8282373
Length = 475
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/44 (45%), Positives = 26/44 (59%)
Frame = +3
Query: 378 GYPREILEFEYDPSFPVRGLWFDTLYGNLLKVDAYGNILVCVHG 509
G+P + LEF DP +RGL D GNL+K D +G I +HG
Sbjct: 51 GFPVDDLEF--DPDLVIRGLIMDKDKGNLVKADRFGYIKRAMHG 92
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 512 EFLKHSQVYELYPNKFLTL-DESRVYVLNTLFNLPETYLIACLID 643
+ L S V E+Y + + L ESR LNTLF++ E + ++D
Sbjct: 94 QMLSTSAVSEIYGRELVDLRKESRWEFLNTLFSVSEAVMFMQMVD 138
>05_07_0284 - 28943527-28943625,28944417-28944785
Length = 155
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = -3
Query: 448 VSNQRPLTGNEGSYSNSNISLGYPLTTNLSLVKLNPNVSYCGDLY 314
+ + PL G +G Y N + +P T + S + NP ++ ++Y
Sbjct: 111 LDRRSPLRGVQGQYLNLRTNSHHPCTPSASYIYANPEIARGAEIY 155
>08_02_0890 +
22309061-22309086,22309172-22309253,22309349-22309441,
22309526-22309720
Length = 131
Score = 27.9 bits (59), Expect = 7.8
Identities = 18/44 (40%), Positives = 18/44 (40%)
Frame = +3
Query: 315 YKSPQYETLGFNLTKERLVVKGYPREILEFEYDPSFPVRGLWFD 446
YK P L E L V G R EF Y PS P WFD
Sbjct: 38 YKQPNLSNLCGYYVCEMLRVCGRYRT--EFTYLPSIPYNASWFD 79
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,142,866
Number of Sequences: 37544
Number of extensions: 305286
Number of successful extensions: 636
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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