Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060082.seq
         (675 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5950| Best HMM Match : 5_nucleotid (HMM E-Value=0.00026)            72   4e-13
SB_3269| Best HMM Match : 5_nucleotid (HMM E-Value=0)                  54   1e-07
SB_45046| Best HMM Match : No HMM Matches (HMM E-Value=.)              51   7e-07
SB_11063| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.64 
SB_48384| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_43830| Best HMM Match : NUDIX (HMM E-Value=2.8e-09)                 29   2.6  
SB_27016| Best HMM Match : NUDIX (HMM E-Value=1.4e-16)                 29   2.6  
SB_36389| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_23254| Best HMM Match : 7tm_1 (HMM E-Value=0)                       28   7.9  
SB_3401| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.9  

>SB_5950| Best HMM Match : 5_nucleotid (HMM E-Value=0.00026)
          Length = 172

 Score = 72.1 bits (169), Expect = 4e-13
 Identities = 30/44 (68%), Positives = 36/44 (81%)
 Frame = +3

Query: 387 REILEFEYDPSFPVRGLWFDTLYGNLLKVDAYGNILVCVHGLNF 518
           +++L F+YDP FPVRGL+FD   GNLLKVD YGNIL CVHG +F
Sbjct: 18  QDLLSFQYDPIFPVRGLFFDCELGNLLKVDTYGNILSCVHGFDF 61


>SB_3269| Best HMM Match : 5_nucleotid (HMM E-Value=0)
          Length = 403

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 27/72 (37%), Positives = 38/72 (52%)
 Frame = +3

Query: 243 FR*QSLHLENVKFYGFDMDYTLAEYKSPQYETLGFNLTKERLVVKGYPREILEFEYDPSF 422
           F    L L+ +  YGFD DYTLA Y +  +  +        L   GYP+ +   +Y+P F
Sbjct: 68  FANNELSLKYINVYGFDYDYTLASYSNTLHFLIYDLAVGNLLSFFGYPKGVEGMKYNPEF 127

Query: 423 PVRGLWFDTLYG 458
            VRGL +DT+ G
Sbjct: 128 AVRGLHYDTVNG 139


>SB_45046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 152

 Score = 51.2 bits (117), Expect = 7e-07
 Identities = 22/30 (73%), Positives = 24/30 (80%)
 Frame = +3

Query: 429 RGLWFDTLYGNLLKVDAYGNILVCVHGLNF 518
           RGL+FD   GNLLKVD YGNIL CVHG +F
Sbjct: 54  RGLFFDCELGNLLKVDTYGNILSCVHGFDF 83


>SB_11063| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = +3

Query: 426 VRGLWFDTLYGNLLKVDAYGNILVCVHGLNF*N 524
           +RG  FD   GN+LK+D +G IL   HG N  N
Sbjct: 161 MRGHIFDIEKGNILKLDNHGVILRASHGTNHLN 193


>SB_48384| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1678

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +3

Query: 348 NLTKERLVVKGYPREILEFEYDPSFPVRGLWFDTLYGNLLKVD 476
           ++T E LV+    RE  + E+ P    + LW+D+     L+VD
Sbjct: 661 SMTSEELVLLAKAREYFKEEWQPIMNKKALWWDSALCYHLRVD 703


>SB_43830| Best HMM Match : NUDIX (HMM E-Value=2.8e-09)
          Length = 416

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
 Frame = +3

Query: 351 LTKERLVVKGYPREILE---FEYDPSFPVRGLWFDTLYGNLLKVDAYGNIL 494
           L K   +V+G  RE++E    E++PS  +     DT++GN ++V   G I+
Sbjct: 343 LEKNESLVQGAKREVIEETGLEFEPSTMI---CIDTVFGNWIRVTFTGKII 390


>SB_27016| Best HMM Match : NUDIX (HMM E-Value=1.4e-16)
          Length = 454

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
 Frame = +3

Query: 351 LTKERLVVKGYPREILE---FEYDPSFPVRGLWFDTLYGNLLKVDAYGNIL 494
           L K   +V+G  RE++E    E++PS  +     DT++GN ++V   G I+
Sbjct: 217 LEKNESLVQGAKREVIEETGLEFEPSTMI---CIDTVFGNWIRVTFTGKII 264


>SB_36389| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 361

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 447 TLYGNLLKVDAYGNILVCVHGLNF*NIHRYTNYIRIN 557
           TLY  +  V A GN LVC+  L    +   TNY  +N
Sbjct: 34  TLYTLIFLVSAAGNTLVCIVILKRKKMKTVTNYFILN 70


>SB_23254| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 349

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 462 LLKVDAYGNILVCVHGLNF*NIHRYTNYI 548
           +L +D +GN+LVCV    +  +   TNY+
Sbjct: 29  ILFLDLFGNLLVCVAIYRYRRLRSVTNYL 57


>SB_3401| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 475

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/41 (31%), Positives = 26/41 (63%)
 Frame = +1

Query: 127 NIIFNSKFKMDVCKENECLTLQDKNIMSKKYYRRVEHRIFV 249
           N++ +    M +C E+ C+  +DK+IM ++ + R + RI+V
Sbjct: 44  NLLKSPASSMKICYEDICI--KDKDIMLEQIHLRDQDRIYV 82


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,089,547
Number of Sequences: 59808
Number of extensions: 407495
Number of successful extensions: 896
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)