Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060081.seq
         (575 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    22   3.3  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    21   7.5  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    21   7.5  
DQ855503-1|ABH88190.1|  124|Tribolium castaneum chemosensory pro...    21   7.5  

>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 79  G*TILVGTNWHQSARAEFLQP 17
           G TIL   NW  +AR   +QP
Sbjct: 375 GLTILQVNNWFINARRRIVQP 395


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = -3

Query: 393 PNYWEQG 373
           PNYW QG
Sbjct: 256 PNYWSQG 262


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = -3

Query: 393 PNYWEQG 373
           PNYW QG
Sbjct: 263 PNYWSQG 269


>DQ855503-1|ABH88190.1|  124|Tribolium castaneum chemosensory
           protein 17 protein.
          Length = 124

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 6/13 (46%), Positives = 13/13 (100%)
 Frame = +1

Query: 82  LDELLENNKITKD 120
           +DE+L+N+++TK+
Sbjct: 29  IDEILKNDRLTKN 41


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,423
Number of Sequences: 336
Number of extensions: 2583
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14308417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)