Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060081.seq
(575 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0646 - 30832201-30832838,30833643-30833838,30833975-308341... 33 0.12
05_06_0132 + 25893241-25893435,25894266-25894487,25894567-258948... 31 0.50
05_02_0027 + 5731546-5731820,5731917-5733039,5733124-5733354 31 0.87
01_01_0646 + 4904790-4904996,4905437-4905483,4905623-4905662,490... 30 1.5
05_06_0150 - 25994562-25995980 29 2.0
05_06_0149 - 25991761-25993181,25993246-25993324 29 2.0
03_06_0625 - 35166736-35168166 29 2.0
04_04_0065 + 22456225-22456744,22456813-22457768 29 2.7
10_08_0354 - 17104223-17106061,17106770-17106794,17107317-171075... 28 4.6
07_01_0349 + 2521006-2522439 28 4.6
05_06_0155 - 26028923-26030263 28 4.6
04_04_0441 - 25226870-25228327 28 4.6
02_03_0277 + 17218693-17219188,17219278-17220269 28 4.6
10_08_0002 - 13986969-13989338 28 6.1
08_02_0607 + 19285580-19286138,19286734-19287668 28 6.1
04_03_0354 + 14830325-14830826,14831491-14832416 28 6.1
09_04_0551 - 18488584-18490017 27 8.1
08_01_0734 + 6729401-6729743,6729997-6730190,6730275-6730461,673... 27 8.1
06_02_0265 - 13586552-13587985 27 8.1
04_03_0353 - 14785648-14787213 27 8.1
03_02_0821 - 11519840-11519989,11520333-11520476,11520556-115207... 27 8.1
02_04_0349 + 22222091-22222639,22222718-22223695 27 8.1
>01_06_0646 -
30832201-30832838,30833643-30833838,30833975-30834126,
30834258-30834303,30834992-30835216,30835374-30835414,
30835705-30835834,30835951-30836019,30836254-30836307,
30836389-30836547,30836854-30836991,30837079-30837141,
30837225-30837264,30837369-30837415,30838062-30838373
Length = 769
Score = 33.5 bits (73), Expect = 0.12
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = +1
Query: 106 KITKDQREKYKFLHIAGMVGSIDNDFCGTDMTIGTDSALHRIIEAIDA 249
+I K+ R + + +AG+ +IDND D + G DSA+ AIDA
Sbjct: 268 EIYKEIRRRGLKVAVAGVPKTIDNDIAVIDKSFGFDSAVEEAQRAIDA 315
>05_06_0132 + 25893241-25893435,25894266-25894487,25894567-25894863,
25894944-25895111,25895201-25895368,25895456-25895536,
25895704-25895770,25895874-25895971,25896587-25896659,
25896753-25896823,25896919-25896968,25897698-25897810,
25898182-25898300,25898629-25898721,25899025-25899051,
25899422-25899823,25900467-25900513,25900612-25900651,
25900733-25900795,25900881-25901018,25901873-25902031,
25902111-25902164,25902324-25902392,25902514-25902643,
25902909-25902949,25903133-25903178,25903200-25903357,
25903560-25903605,25903702-25903853,25904022-25904243
Length = 1202
Score = 31.5 bits (68), Expect = 0.50
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = +1
Query: 106 KITKDQREKYKFLHIAGMVGSIDNDFCGTDMTIGTDSALHRIIEAIDA 249
+I K+ R++ + +AG+ +IDND D + G D+A+ AID+
Sbjct: 912 EIFKEIRKRGLKVSVAGIPKTIDNDIAIIDKSFGFDTAVEEAQRAIDS 959
>05_02_0027 + 5731546-5731820,5731917-5733039,5733124-5733354
Length = 542
Score = 30.7 bits (66), Expect = 0.87
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +3
Query: 285 IMEVMGRNCGYXALVAALASEAYQV-FIPEDP 377
++++MGRN G+ A+ A LAS + IPE P
Sbjct: 301 VVKLMGRNSGFIAMYATLASRDVDLCLIPESP 332
>01_01_0646 +
4904790-4904996,4905437-4905483,4905623-4905662,
4905770-4905970,4906260-4906472,4906561-4906629,
4906711-4906840,4906934-4906974,4907063-4907287,
4907575-4907745,4908713-4908778
Length = 469
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 285 IMEVMGRNCGYXALVAALASEAYQ-VFIPEDP 377
++++MGRN G+ A+ A LAS IPE P
Sbjct: 294 VVKLMGRNSGFIAMYATLASRDVDCCLIPESP 325
>05_06_0150 - 25994562-25995980
Length = 472
Score = 29.5 bits (63), Expect = 2.0
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +1
Query: 7 WIPRAAGIRHELTGANLFRQEWSSLLDELL 96
W+P+A ++HE GA + W+S L+ ++
Sbjct: 339 WVPQAEVVQHEAVGAFVTHCGWNSTLEAIM 368
>05_06_0149 - 25991761-25993181,25993246-25993324
Length = 499
Score = 29.5 bits (63), Expect = 2.0
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +1
Query: 7 WIPRAAGIRHELTGANLFRQEWSSLLDELL 96
W+P+A ++HE GA + W+S L+ ++
Sbjct: 366 WVPQAEVVQHEAVGAFVTHCGWNSTLEAIM 395
>03_06_0625 - 35166736-35168166
Length = 476
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 7 WIPRAAGIRHELTGANLFRQEWSSLLDELL 96
W P+A +RHE GA + W+S L+ ++
Sbjct: 337 WAPQAEVVRHEAAGAFVTHCGWNSTLEAIM 366
>04_04_0065 + 22456225-22456744,22456813-22457768
Length = 491
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 7 WIPRAAGIRHELTGANLFRQEWSSLLDEL 93
W P+ A +RHE G L W+S ++ L
Sbjct: 366 WCPQEAVLRHEAVGVFLTHSGWNSTVESL 394
>10_08_0354 -
17104223-17106061,17106770-17106794,17107317-17107561,
17108432-17108677
Length = 784
Score = 28.3 bits (60), Expect = 4.6
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +3
Query: 198 DNRY*FSLA*NH*SY*CNCSTAYSHQRTFIME--VMGRNCGYXALVAALASEAYQVFIPE 371
DN SLA + S+ +H T + + V+G CG A LAS Y+V + E
Sbjct: 231 DNALLMSLAEKGLALKTGASSPSAHHHTVLCDAVVVGSGCGGGVAAAVLASAGYKVVVVE 290
>07_01_0349 + 2521006-2522439
Length = 477
Score = 28.3 bits (60), Expect = 4.6
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 7 WIPRAAGIRHELTGANLFRQEWSSLLDEL 93
W P+AA +RH GA + W ++L+ +
Sbjct: 344 WTPQAAVLRHPAVGAFVTHSGWGAVLEAM 372
>05_06_0155 - 26028923-26030263
Length = 446
Score = 28.3 bits (60), Expect = 4.6
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 7 WIPRAAGIRHELTGANLFRQEWSSLLD 87
W P+A +RH TGA + W+S+L+
Sbjct: 321 WAPQADVLRHRATGAFVTHCGWNSVLE 347
>04_04_0441 - 25226870-25228327
Length = 485
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 7 WIPRAAGIRHELTGANLFRQEWSSLLDEL 93
W P+A + H TGA L W+S+L+ L
Sbjct: 348 WAPQARILAHPSTGAFLTHCGWNSILESL 376
>02_03_0277 + 17218693-17219188,17219278-17220269
Length = 495
Score = 28.3 bits (60), Expect = 4.6
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 7 WIPRAAGIRHELTGANLFRQEWSSLLD 87
W P+ A +RH+ GA L W+S+L+
Sbjct: 370 WCPQEAVLRHDAIGAFLTHCGWNSVLE 396
>10_08_0002 - 13986969-13989338
Length = 789
Score = 27.9 bits (59), Expect = 6.1
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Frame = +1
Query: 40 LTGANLFRQEWSSLL----DELLENNKITKDQREKYKFLHIAGMVGSIDNDFCGTDMTIG 207
L+G NL QE +S L DELLE + K+ E L I V S+ C D+
Sbjct: 95 LSGENLRLQEVASSLLLKLDELLELYSVNKNVEEALGMLKICLQVTSL-CQMCNKDI--- 150
Query: 208 TDSALHRIIEAIDAI 252
++ LH +++++ I
Sbjct: 151 AEARLHSALKSLELI 165
>08_02_0607 + 19285580-19286138,19286734-19287668
Length = 497
Score = 27.9 bits (59), Expect = 6.1
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +1
Query: 7 WIPRAAGIRHELTGANLFRQEWSSLLDELL 96
W P+A + HE G L W+S L+ ++
Sbjct: 377 WCPQAEVLEHEAVGVFLTHSGWNSTLESIV 406
>04_03_0354 + 14830325-14830826,14831491-14832416
Length = 475
Score = 27.9 bits (59), Expect = 6.1
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +1
Query: 7 WIPRAAGIRHELTGANLFRQEWSSLLDELL 96
W P+A + HE G L W+S L+ ++
Sbjct: 355 WCPQAEVLEHEAVGVFLTHSGWNSTLESIV 384
>09_04_0551 - 18488584-18490017
Length = 477
Score = 27.5 bits (58), Expect = 8.1
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +1
Query: 1 N*WIPRAAGIRHELTGANLFRQEWSSLLD 87
N W+P+ + +RH T A + W+S+L+
Sbjct: 349 NTWVPQPSVLRHRATAAFVTHCGWNSVLE 377
>08_01_0734 +
6729401-6729743,6729997-6730190,6730275-6730461,
6730880-6731073,6731435-6731827,6731913-6731978,
6732061-6732429,6732517-6732568,6733393-6733397
Length = 600
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 336 LASEAYQVFIPEDPVPNNW 392
LAS+A QV+ EDP N W
Sbjct: 71 LASQAVQVYYVEDPSDNGW 89
>06_02_0265 - 13586552-13587985
Length = 477
Score = 27.5 bits (58), Expect = 8.1
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 7 WIPRAAGIRHELTGANLFRQEWSSLLD 87
W+P+ A ++H TGA + W+S L+
Sbjct: 340 WVPQVAVLQHASTGAFVTHCGWNSTLE 366
>04_03_0353 - 14785648-14787213
Length = 521
Score = 27.5 bits (58), Expect = 8.1
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +1
Query: 7 WIPRAAGIRHELTGANLFRQEWSSLLDEL 93
W P+A + HE G L W+S L+ +
Sbjct: 401 WCPQAEVLEHEAVGVFLTHSGWNSTLESI 429
>03_02_0821 -
11519840-11519989,11520333-11520476,11520556-11520754,
11521309-11521412,11521488-11521598,11521653-11521771,
11521858-11522002,11522516-11522568,11522676-11522721,
11522818-11522963,11523691-11523760,11524930-11525083,
11525186-11525307,11525612-11525835,11526317-11526371,
11526793-11526972
Length = 673
Score = 27.5 bits (58), Expect = 8.1
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 8/54 (14%)
Frame = +3
Query: 255 STAYSHQRTFIME--VMGRNCGYXALVAALASEAYQV------FIPEDPVPNNW 392
ST S + F+ E V G + G LVAALA A+ + F P+ V N+W
Sbjct: 468 STPRSGPKAFVSEYAVTGNDAGRGTLVAALAEAAFLIGLERNRFSPDAIVFNSW 521
>02_04_0349 + 22222091-22222639,22222718-22223695
Length = 508
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 7 WIPRAAGIRHELTGANLFRQEWSSLLDEL 93
W P+ A +RHE L W+S L+ L
Sbjct: 382 WCPQEAVLRHEAVALFLTHSGWNSTLESL 410
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,409,287
Number of Sequences: 37544
Number of extensions: 282479
Number of successful extensions: 708
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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