Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060081.seq
         (575 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               24   1.2  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   3.8  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   5.0  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   6.6  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = +1

Query: 265 IHIKEHLLWRSWVATV 312
           +H  +HL+W SW+ ++
Sbjct: 465 MHPYDHLVWNSWMPSI 480


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +3

Query: 534 PCSRYXRYYPC 566
           P  R+ +YYPC
Sbjct: 207 PAERHKKYYPC 217


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
          beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -2

Query: 40 ARAEFLQPGGS 8
          A+ EFL PGGS
Sbjct: 66 AKCEFLNPGGS 76


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 534 PCSRYXRYYPC 566
           P SR   YYPC
Sbjct: 221 PASRNEEYYPC 231


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,552
Number of Sequences: 438
Number of extensions: 3171
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)