Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060079.seq
         (691 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subu...    23   1.8  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    23   1.8  
DQ855502-1|ABH88189.1|  126|Tribolium castaneum chemosensory pro...    23   3.1  
DQ855495-1|ABH88182.1|  126|Tribolium castaneum chemosensory pro...    23   3.1  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   4.1  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   4.1  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    22   5.4  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    21   9.5  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    21   9.5  
AF260822-1|AAG02020.1|  138|Tribolium castaneum alpha-esterase l...    21   9.5  

>S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subunit
           protein.
          Length = 141

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +2

Query: 518 PSSLGMAKGVSLPYFQV 568
           P+S+G++  VSLP F+V
Sbjct: 21  PNSVGVSNEVSLPQFKV 37


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +2

Query: 518 PSSLGMAKGVSLPYFQV 568
           P+S+G++  VSLP F+V
Sbjct: 203 PNSVGVSSEVSLPQFKV 219


>DQ855502-1|ABH88189.1|  126|Tribolium castaneum chemosensory
           protein 16 protein.
          Length = 126

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 593 GAKLVIHHSLENK 555
           G + VIHH +ENK
Sbjct: 82  GVRKVIHHLIENK 94


>DQ855495-1|ABH88182.1|  126|Tribolium castaneum chemosensory
           protein 9 protein.
          Length = 126

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 593 GAKLVIHHSLENK 555
           G + VIHH +ENK
Sbjct: 82  GVRKVIHHLIENK 94


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 11/40 (27%), Positives = 17/40 (42%)
 Frame = +2

Query: 335 HQATLPCDLGYINPIIKSPIPYTNHPRLNIYFHQSPDAVL 454
           H   L      + P  K  +P  NH  LN+   + P A++
Sbjct: 239 HPPHLSSHPAIVTPGPKQELPDLNHKPLNLTIKKMPIAIV 278


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 11/40 (27%), Positives = 17/40 (42%)
 Frame = +2

Query: 335 HQATLPCDLGYINPIIKSPIPYTNHPRLNIYFHQSPDAVL 454
           H   L      + P  K  +P  NH  LN+   + P A++
Sbjct: 131 HPPHLSSHPAIVTPGPKQELPDLNHKPLNLTIKKMPIAIV 170


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 116 GRDXYRVHEDRRGXYLH 66
           G+D + VH  RRG  LH
Sbjct: 14  GQDKHMVHWFRRGLRLH 30


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 448 GVRGLMEIDVKSGVVGVWN 392
           GVR L+E+D  S V   W+
Sbjct: 298 GVRLLLEVDAPSHVNAGWS 316


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +3

Query: 375 RSSNPRFHTPTTPDLTSISINPLTPY*KEFAP 470
           RSS+P+   PT P +   ++    P  K   P
Sbjct: 90  RSSSPQTSAPTGPPIVRCALRKHKPNRKPRTP 121


>AF260822-1|AAG02020.1|  138|Tribolium castaneum alpha-esterase like
           protein E3 protein.
          Length = 138

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = +3

Query: 459 EFAPGLKPPLSSEAPSAISPPRHW 530
           E  P  KPPL      A   P HW
Sbjct: 2   EGMPYAKPPLGHLRFKAPELPEHW 25


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,116
Number of Sequences: 336
Number of extensions: 2837
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18114270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)