Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060079.seq
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...    42   8e-05
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    27   2.6  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   2.6  
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p...    25   7.8  
SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ...    25   7.8  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 41.9 bits (94), Expect = 8e-05
 Identities = 20/43 (46%), Positives = 29/43 (67%)
 Frame = +2

Query: 134 KEDQKXWVPVTKLGRLXREGKIDKLESI*NTSHS*PLLDYSDV 262
           ++++K WVPVTKLGRL + GKI  +E I    +S P+ +Y  V
Sbjct: 28  RDEEKEWVPVTKLGRLVKAGKIKSIEEI--YLYSLPIKEYQIV 68


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
 Frame = +3

Query: 345 PSPAISATSTRSSNPRFHTPTTPDLTSISINPLTP-Y*KEFAPGLKPPLSSEAPSAISPP 521
           P  ++S+         FHTPT P  T +S    +P    +    +  PLS +A S  S P
Sbjct: 123 PPNSLSSQPKHQEFHLFHTPTIPRTTQLSSKTSSPIVIPDDNEQVASPLSKKAASLTSSP 182


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +3

Query: 348 SPAISATSTRSSNPRFHTPTTPDLTSIS 431
           S  IS +ST   N  FH PT    TS S
Sbjct: 801 SRTISTSSTNEYNTSFHAPTVSSTTSSS 828


>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 277

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +3

Query: 354 AISATSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAISPP 521
           A+   ++ S    F  PTT    S+SI+P     K  A   +P + ++  S  S P
Sbjct: 69  AVETNASASHETSFALPTTSPAASLSISPT----KSAAVSSEPNVEADVKSLSSTP 120


>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 329 LMHQATLPCDLGYINPIIKSPIPYTNHP 412
           + HQA L C  GY + +    +P+ N P
Sbjct: 348 ICHQAILRCIYGYYHNLSLEELPFINVP 375


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,332,053
Number of Sequences: 5004
Number of extensions: 46099
Number of successful extensions: 197
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)