Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060079.seq
(691 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0756 + 5819367-5820038,5820847-5821005 42 3e-04
03_06_0386 + 33555682-33556344,33557138-33557299 42 3e-04
02_01_0302 - 2021221-2023305 31 0.65
01_01_0448 - 3332238-3332330,3332414-3332481,3332570-3332618,333... 31 0.65
11_06_0610 - 25449085-25453284 30 1.5
03_06_0704 + 35641774-35642031,35642122-35642446,35642546-356426... 30 1.5
03_02_0253 - 6839543-6839623,6839725-6839805,6839935-6839976,684... 30 1.5
08_02_1277 + 25823835-25825113,25825201-25825418,25825501-258257... 29 2.6
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 29 2.6
03_02_0730 + 10784784-10785341 29 2.6
02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924... 29 3.5
01_07_0237 + 42204301-42205200,42205356-42206030 29 4.6
03_06_0572 + 34812203-34812278,34812485-34813768,34813973-348140... 28 6.1
06_03_1122 - 27775141-27775333,27775414-27775604,27775907-277770... 28 8.0
06_01_0018 + 194295-194640,194679-194917,195737-195885,196248-19... 28 8.0
02_05_0345 - 28142434-28142658,28143087-28143158,28143252-281433... 28 8.0
01_06_0404 + 29098141-29098214,29098459-29098673,29099491-290995... 28 8.0
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/43 (46%), Positives = 30/43 (69%)
Frame = +2
Query: 134 KEDQKXWVPVTKLGRLXREGKIDKLESI*NTSHS*PLLDYSDV 262
+++++ WVPVTKLGRL +E KI K+E I HS P+ ++ V
Sbjct: 41 RQEEEKWVPVTKLGRLVKENKIHKIEEI--YLHSLPVKEHQIV 81
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/43 (44%), Positives = 30/43 (69%)
Frame = +2
Query: 134 KEDQKXWVPVTKLGRLXREGKIDKLESI*NTSHS*PLLDYSDV 262
+++++ WVPVTKLGRL +EG+ K+E I HS P+ ++ V
Sbjct: 38 RQEEEKWVPVTKLGRLVKEGRFSKIEEI--YLHSLPVKEHQIV 78
>02_01_0302 - 2021221-2023305
Length = 694
Score = 31.5 bits (68), Expect = 0.65
Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 9/68 (13%)
Frame = +3
Query: 345 PSPAISATSTRSSNPRFHTPTTPDLTS--ISINPLTPY*KE-----FA--PGLKPPLSSE 497
PSP S+T+ S +P TPT P S ++ P P + FA PG P+ S
Sbjct: 519 PSPPSSSTAPPSHSPPQSTPTHPSYPSPPVTYTPPPPTSADRPDVRFAPPPGSYGPIPST 578
Query: 498 APSAISPP 521
PS+ SPP
Sbjct: 579 PPSSGSPP 586
>01_01_0448 -
3332238-3332330,3332414-3332481,3332570-3332618,
3332716-3332798,3332900-3333023,3333389-3333486,
3333555-3333634,3333712-3333782,3333872-3333953,
3334158-3334237,3334365-3334416,3334843-3334958
Length = 331
Score = 31.5 bits (68), Expect = 0.65
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +3
Query: 354 AISATSTRSSNPRFHTPTTP 413
A S+T+TR S PR H PTTP
Sbjct: 2 AASSTATRLSPPRLHAPTTP 21
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +3
Query: 345 PSPAISATSTRSSNPRFHTPTTPDLTSIS-INPLTPY*KEFAPGLKPPLSSEAPSAISPP 521
P+P A+S P HTP+ P+ T S +P TP K +P PP + E + SPP
Sbjct: 619 PTPESKASSPPPPAPEGHTPSPPESTPPSEKSPPTPESKASSP---PPPTPEGHTP-SPP 674
Query: 522 R 524
+
Sbjct: 675 K 675
>03_06_0704 +
35641774-35642031,35642122-35642446,35642546-35642699,
35643662-35643706,35644121-35644180,35644532-35644694,
35645356-35645717,35645985-35646303
Length = 561
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Frame = +3
Query: 345 PSPAISATST----RSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAI 512
P P++ T+T + S P+ P P L N P E PGLK + + SA
Sbjct: 118 PKPSLPPTTTQRDPKPSPPQHKAPERPQLVIPGANNRPPPRPEPMPGLKKTAAPSSSSAS 177
Query: 513 SPP 521
PP
Sbjct: 178 VPP 180
>03_02_0253 -
6839543-6839623,6839725-6839805,6839935-6839976,
6840604-6840695,6840789-6840858,6841645-6841737,
6841926-6842002,6842614-6842800
Length = 240
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/59 (33%), Positives = 29/59 (49%)
Frame = +2
Query: 287 ATPSSARITIGGLALMHQATLPCDLGYINPIIKSPIPYTNHPRLNIYFHQSPDAVLEGV 463
+TP AR I G + H AT+ L N +KS + +YFH+ PD V+E +
Sbjct: 132 STPEEARKFIKGYSESHAATIGSVL-VTN--VKSGARKEGWDKAEVYFHKIPDEVVESL 187
>08_02_1277 +
25823835-25825113,25825201-25825418,25825501-25825724,
25826468-25827080,25827735-25827775,25830549-25831191,
25832595-25834012,25834110-25834251,25834415-25834522,
25835346-25835558,25835643-25835753,25836099-25836293,
25836555-25836695,25836835-25836909
Length = 1806
Score = 29.5 bits (63), Expect = 2.6
Identities = 22/65 (33%), Positives = 27/65 (41%)
Frame = -1
Query: 520 GGEIADGASDDNGGFNPGANSF*YGVRGLMEIDVKSGVVGVWNRGFDDRVDVAEIAGEGS 341
GG + S D G F+ S GL +D SGV G W +R A + EGS
Sbjct: 804 GGTGSGNWSKDFGAFDSSLGSL--SGEGLGFVDNNSGVYGGWRESVPNRSGSAPPSMEGS 861
Query: 340 LMHKG 326
L G
Sbjct: 862 LAALG 866
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 29.5 bits (63), Expect = 2.6
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Frame = +3
Query: 348 SPAISATS-TRSSNPRFHTPTTPDL--TSISINPLTPY*KEFAPGLKPPLSSEAPSAIS 515
SP+ S TS + S ++PT+P TS + +P +P +PG P S +PS+ S
Sbjct: 1749 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSSAYSPTSPAYSPTSPGYSPTSPSYSPSSPS 1807
>03_02_0730 + 10784784-10785341
Length = 185
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +3
Query: 474 LKPPLSSEAPSAISPPRHW 530
LKPPLS A + ISPP W
Sbjct: 28 LKPPLSIRATNVISPPATW 46
>02_04_0433 -
22891261-22891509,22892181-22892301,22892405-22892496,
22892692-22892755,22892855-22892920,22893102-22893193,
22893991-22894050,22894181-22894270,22894484-22894613,
22895066-22895157,22895299-22895373,22895663-22895754,
22896496-22896586,22897541-22897574,22897745-22897791,
22899110-22899209,22899300-22899436,22900837-22901015,
22901146-22901188,22901264-22901297,22901839-22901948,
22902043-22902224,22903062-22903168,22903266-22903480
Length = 833
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +3
Query: 429 SINPLTPY*KEFAPGLKPPLSSEAPSAISPPRHWAW 536
S L+PY E PP S +AP+A PPR W
Sbjct: 305 SFPKLSPYQMEKFLVAAPPPSGDAPAAPVPPRRHRW 340
>01_07_0237 + 42204301-42205200,42205356-42206030
Length = 524
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = +1
Query: 424 LFPSIPXXXXXXXXXXXXXXXCHQRLHQLSHPLVTGHG 537
LFP P H++LHQ++ ++ GHG
Sbjct: 221 LFPGSPLARVLGGRSLRTTKRVHEKLHQITEAIIQGHG 258
>03_06_0572 +
34812203-34812278,34812485-34813768,34813973-34814049,
34814299-34814646
Length = 594
Score = 28.3 bits (60), Expect = 6.1
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +3
Query: 348 SPAISATSTRSSNPRFHTPTTPDLTSI-SINPLTPY*KEFAPGLKPPLSSEAPSAISPP 521
+PA + + ++NP + P TP + ++ S NP T Y P L PPL E P+ ++ P
Sbjct: 253 TPATNPVTVPATNPAMN-PVTPGIVTVPSTNPATGYSNN--PNL-PPLYPE-PTPVTMP 306
>06_03_1122 -
27775141-27775333,27775414-27775604,27775907-27777099,
27777206-27777353,27777534-27777609,27777696-27777818,
27777886-27778050,27778169-27778259,27778580-27778664,
27778745-27778900,27778992-27779048,27779138-27779236,
27779381-27779499,27780145-27780202
Length = 917
Score = 27.9 bits (59), Expect = 8.0
Identities = 22/62 (35%), Positives = 30/62 (48%)
Frame = +3
Query: 339 KLPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAISP 518
+L SP+ S+ T + F P + TS+S L+P P SSEAPS +S
Sbjct: 581 QLSSPSQSSPMTLQTVLPFSQPQSYPDTSMS--SLSPSNTSTMHNALRPFSSEAPSHLSM 638
Query: 519 PR 524
PR
Sbjct: 639 PR 640
>06_01_0018 +
194295-194640,194679-194917,195737-195885,196248-196342,
196685-196780,197248-197399,198683-198823,199068-199319,
199463-199603,199686-200003,200146-200232,201025-202006,
202091-202179,202968-203072,203155-204306,204844-205359,
205455-205650,206299-207182
Length = 1979
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +3
Query: 345 PSPAISATSTRSSNPRFHTPTTPDLT 422
PSP +A TRSS+ R H TP T
Sbjct: 9 PSPTSTARETRSSSARGHASPTPTPT 34
>02_05_0345 -
28142434-28142658,28143087-28143158,28143252-28143371,
28143483-28143674,28144919-28145017,28145448-28145594,
28146310-28146513
Length = 352
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -1
Query: 343 SLMHKGETANSNASG*RGGQHIDSFNCD 260
S+ G +AN SG R G H SF+CD
Sbjct: 15 SVSGDGRSANGAGSGKRVGTHNGSFHCD 42
>01_06_0404 +
29098141-29098214,29098459-29098673,29099491-29099596,
29099686-29100235,29100332-29100429,29100519-29100764,
29100867-29100981,29101092-29101305,29101402-29101991
Length = 735
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +3
Query: 345 PSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAP 470
P+P ++A S+R NP PD+T+ ++ + Y + +P
Sbjct: 447 PAPVMAAFSSRGPNPITPQILKPDITAPGVSVIAAYSEAVSP 488
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,299,678
Number of Sequences: 37544
Number of extensions: 350721
Number of successful extensions: 1226
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1223
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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