Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060078.seq
(685 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC12B10.09 |||S-adenosylmethionine transporter |Schizosaccharo... 30 0.36
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 29 0.83
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom... 27 1.9
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 27 3.3
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 27 3.3
SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr... 26 4.4
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R... 26 5.8
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 26 5.8
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom... 25 7.7
>SPAC12B10.09 |||S-adenosylmethionine transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 345
Score = 29.9 bits (64), Expect = 0.36
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = -1
Query: 550 LRCRLKTTMSIGRPFFTHLFSVIKNEHKICQFGRVFHQIPHGR 422
++CR+K M + +FS + +K+CQFGR+ I HG+
Sbjct: 20 VQCRIKEIMYWNICLYWDVFSKLIIYNKVCQFGRI--HIFHGK 60
>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1471
Score = 28.7 bits (61), Expect = 0.83
Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
Frame = +2
Query: 218 LQQIQHGPANCYLNFLEKKNINYILNVMPVMQDERKMSKRKKKVINNNKYILFNS---WY 388
L+++Q + + ++KN+ + + + K + +K V+ N IL NS W
Sbjct: 891 LRRLQDSAGRTSILYEKQKNLQASITEV---SKQLKSNSKKVTVLRNKLNILNNSLSKWK 947
Query: 389 TKIKQPEWPSSPAMWDLVKNTPELADFV 472
IK+P S P D N +L +
Sbjct: 948 CLIKKPSDFSEPVSMDFTSNDEQLVQLL 975
>SPAC3C7.09 |set8||lysine methyltransferase Set8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 429
Score = 27.5 bits (58), Expect = 1.9
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Frame = +2
Query: 377 NSWYTKIKQPEWPSSPAMW-----DLVKNTPELADFVFIFDHTEKMGKKW 511
+SW +KI P+W + A++ + P LA + + +H+ K KW
Sbjct: 157 DSWPSKITLPKWVHADALFHSRCLESPFKDPVLAPVIDLCNHSSKSNAKW 206
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 26.6 bits (56), Expect = 3.3
Identities = 8/31 (25%), Positives = 19/31 (61%)
Frame = +2
Query: 302 PVMQDERKMSKRKKKVINNNKYILFNSWYTK 394
P++ + +K+S + K++ +N Y N W+ +
Sbjct: 1060 PILPNLQKLSTQYSKIVRDNDYGNVNCWFNR 1090
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 26.6 bits (56), Expect = 3.3
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +2
Query: 164 NCGRVQ-K*KVVE*TGIELLQQIQHGPANCYLNFLEKKNINYILNVMPVMQDERKMSKRK 340
N G VQ K V + IE L + + + Y + L +NIN + +V+PV Q +
Sbjct: 176 NIGSVQEKCTVKHRSQIENLDEYKSQAKSYYFDRLFDQNINKVFDVVPVTQVKNAPDDVL 235
Query: 341 KKVINNNKYIL 373
+ + N +I+
Sbjct: 236 EDLFKNYDFIV 246
>SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 497
Score = 26.2 bits (55), Expect = 4.4
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Frame = +3
Query: 351 LTTINTFCLTVGTLRSSSPSGLVARPCGIW*KTRPNW-QILCSFLITLKRWVKNGRPIDI 527
L T+N TVG + S GL+A+ C T P W Q L W G + I
Sbjct: 219 LATLNILAQTVGFMAGSFLGGLLAKAC--MHLTNPIWNQYTVGSWFMLFAWCIYGILLSI 276
Query: 528 VVFKRQRSNSSE 563
FK R++ ++
Sbjct: 277 -FFKEIRADGND 287
>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
Res1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 637
Score = 25.8 bits (54), Expect = 5.8
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = +3
Query: 75 NISSRIQAGRFKGLQKSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQ 242
++SS+ + F ++ + EQ S + K ++LN L YN N DQ
Sbjct: 579 SLSSKHEVDLFTAENEAAREKLVEQLCSLQAQRKQKINEILNLLSMGMYNTINTDQ 634
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.8 bits (54), Expect = 5.8
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = -1
Query: 313 LHDRHYVEDIVNVLFF 266
L+DR YVE I+++LFF
Sbjct: 253 LYDRVYVEKILDILFF 268
>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 762
Score = 25.4 bits (53), Expect = 7.7
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +2
Query: 329 SKRKKKVINNNKYILFN-SWYTKIKQPEWP-SSPAMWDLVKNTPEL 460
S R++ V NNN +FN S++ KI + + +WD ++N +L
Sbjct: 232 SLRERFVDNNNSDYIFNVSYHKKIPADGFSLYTREIWDTIENNKDL 277
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,911,797
Number of Sequences: 5004
Number of extensions: 62883
Number of successful extensions: 204
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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