Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060078.seq
         (685 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0726 + 19758916-19759098,19759774-19760318,19760581-197614...    29   3.4  
01_06_1415 + 37171380-37171923,37172476-37172666,37173628-37173678     29   3.4  
12_02_0318 - 17457182-17462232,17462745-17462955,17463356-174634...    28   6.0  
04_01_0203 + 2432745-2433642,2433723-2433806,2434458-2434471           28   6.0  
11_06_0634 - 25685216-25685329,25685407-25685511,25685681-256857...    28   7.9  
11_02_0036 + 7599646-7599950,7600106-7600145,7600403-7600437,760...    28   7.9  
07_03_0508 - 18892193-18893119,18893183-18894528,18894594-18895206     28   7.9  

>09_04_0726 +
           19758916-19759098,19759774-19760318,19760581-19761492,
           19762067-19762328
          Length = 633

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -1

Query: 544 CRLKTTMSIGRPFFTHLFSVIKN 476
           C+LK +    +PFFT LFS +KN
Sbjct: 325 CQLKYSHDTNKPFFTALFSHMKN 347


>01_06_1415 + 37171380-37171923,37172476-37172666,37173628-37173678
          Length = 261

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +2

Query: 338 KKKVINNNKYILFNSWYTKIKQPEWPSSPAMWDLVKNTPELADFV 472
           +   I+ N Y+   +W T+  QP    S   W L K +   A +V
Sbjct: 133 RSSTISENSYLCVATWDTRAPQPSQIESAVRWALRKRSQNKAVYV 177


>12_02_0318 - 17457182-17462232,17462745-17462955,17463356-17463403,
            17466161-17466346
          Length = 1831

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = +2

Query: 428  MWDLVKNTPELADFVFIFDHTEKMGKKWPTDRHRRLQATTQQFQRAKKDRLRCLPTQ 598
            MW   K+TP   D    F+  +K    W T+  + L  +  +     +DR+  LP Q
Sbjct: 1544 MWQNSKSTPTPKDCAAFFEFVDK---NWNTEIGKYLAGSITKVPVCSEDRILLLPKQ 1597


>04_01_0203 + 2432745-2433642,2433723-2433806,2434458-2434471
          Length = 331

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +2

Query: 386 YTKIKQPEWPSSPAMWDLVKNTPELADFVFI-FDHTEK 496
           + +  +PEWPSS A+     N PEL   V +  D T K
Sbjct: 169 HDQTNKPEWPSSVAVQHDQTNKPELPSSVAVQHDQTNK 206


>11_06_0634 -
           25685216-25685329,25685407-25685511,25685681-25685740,
           25685827-25685965,25686056-25686240,25686328-25686411,
           25686499-25686621,25687088-25687267,25687364-25687433,
           25687520-25687616,25687695-25687770,25688259-25688348,
           25688383-25688529,25688647-25688715,25689004-25689177,
           25689266-25689336,25689409-25689557,25690723-25690774,
           25690865-25691120,25691196-25691287,25691420-25691541,
           25691909-25692679,25692883-25692940,25693068-25693107,
           25694462-25694595,25694685-25694793,25694896-25694991
          Length = 1220

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = -1

Query: 571 FFCSLELLRCRLKTTMSIGRPFFTHLFSVIKNEHK 467
           FFCS +LLR        + R     L  VI  EHK
Sbjct: 623 FFCSADLLRPDFSGGEEVERLAMAELIEVISEEHK 657


>11_02_0036 +
           7599646-7599950,7600106-7600145,7600403-7600437,
           7600789-7601189,7601281-7601361,7601451-7601536
          Length = 315

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 502 THLFSVIKNEHKICQFGRVFHQIP 431
           TH F  +K E+ IC F R    IP
Sbjct: 198 THSFDAMKKEYYICGFARSIESIP 221


>07_03_0508 - 18892193-18893119,18893183-18894528,18894594-18895206
          Length = 961

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +2

Query: 26  RCVFITNELPGCWALKKYIIKNTSGSFQRFTKIKHGKHAGATI 154
           +  FIT     C+    + +KN   +FQR T+I  G   G  +
Sbjct: 803 KTAFITRIGTYCYTTMPFGLKNAGPTFQRTTRISLGSQIGRNV 845


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,353,034
Number of Sequences: 37544
Number of extensions: 386485
Number of successful extensions: 971
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)