Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060078.seq
(685 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25877| Best HMM Match : TP1 (HMM E-Value=8.5) 31 1.1
SB_50241| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_44509| Best HMM Match : EMI (HMM E-Value=4.2) 29 3.5
SB_12493| Best HMM Match : RrnaAD (HMM E-Value=4.6) 29 3.5
SB_47960| Best HMM Match : Extensin_2 (HMM E-Value=0.54) 29 4.6
SB_38410| Best HMM Match : 7tm_1 (HMM E-Value=0) 29 4.6
SB_22629| Best HMM Match : CDC37 (HMM E-Value=3.7) 28 6.1
SB_57364| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_38222| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_6135| Best HMM Match : CSD (HMM E-Value=5.4) 28 6.1
SB_41377| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
>SB_25877| Best HMM Match : TP1 (HMM E-Value=8.5)
Length = 139
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 299 MPVMQDERKMSKRKKKVINNNKYILFNSWYTKIK 400
+PV +++ + K NN KY L WY+K++
Sbjct: 7 LPVQNQAKRLRTWRSKTRNNTKYKLICIWYSKVR 40
>SB_50241| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 131
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +2
Query: 263 LEKKNINYILNVMPVMQDERKMSKRKKKVINNNKY---ILFNSWYTKIKQPEWPSSPAMW 433
+E K + Y V +DE K+ RK+ + +Y ILFN++ ++ +W S + W
Sbjct: 26 IEAKTMKYKYGCSDVPRDE-KLDLRKRSLYYLERYFYFILFNTYLNMERRSKWDRSFSQW 84
>SB_44509| Best HMM Match : EMI (HMM E-Value=4.2)
Length = 782
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/65 (24%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +1
Query: 1 RHEKCSKRK-VCLHHKRIARLLGIKKIYHQEYKRVVSKVYKNQTW*TCRSNNLLQKLRPC 177
+ ++ S RK C + +++ I+++ Q+ R +K+ K+ + TC +LR C
Sbjct: 61 KDDRYSTRKGACAVVQSSQKMIDIRRVRRQKSMRSCAKLSKDNRYSTCTPAEEYAQLRVC 120
Query: 178 AKMKS 192
A ++S
Sbjct: 121 AVVRS 125
>SB_12493| Best HMM Match : RrnaAD (HMM E-Value=4.6)
Length = 984
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/65 (24%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +1
Query: 1 RHEKCSKRK-VCLHHKRIARLLGIKKIYHQEYKRVVSKVYKNQTW*TCRSNNLLQKLRPC 177
+ ++ S RK C + +++ I+++ Q+ R +K+ K+ + TC +LR C
Sbjct: 828 KDDRYSTRKGACAVVQSSQKMIDIRRVRRQKSMRSCAKLSKDNRYSTCTPAEEYAQLRVC 887
Query: 178 AKMKS 192
A ++S
Sbjct: 888 AVVRS 892
>SB_47960| Best HMM Match : Extensin_2 (HMM E-Value=0.54)
Length = 710
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -3
Query: 212 RFQFIQQLFIFAHGRSFCRRLLLRHVYH 129
RF Q I+AH SF +R+LLR + H
Sbjct: 22 RFPRNPQKLIYAHQNSFKKRILLRRIEH 49
>SB_38410| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 368
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = -1
Query: 385 PTVKQNVFIVVNHLLLAFGHFAFVLHDRHYVEDIVNVLF 269
P N+ +++ +L A + + HDR + E N+LF
Sbjct: 313 PREVHNILLLMGYLNSALNPYMYSFHDRQFKEAFKNILF 351
>SB_22629| Best HMM Match : CDC37 (HMM E-Value=3.7)
Length = 504
Score = 28.3 bits (60), Expect = 6.1
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -1
Query: 502 THLFSVIKNEHKICQFGRVFHQIPHGRATRPLGLLDLSVPT 380
TH SV+K K+C+ RV +Q H R R ++VPT
Sbjct: 395 THWRSVVKKGAKLCEDKRV-NQAKHKRHLRKTRAASVTVPT 434
>SB_57364| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 318
Score = 28.3 bits (60), Expect = 6.1
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -1
Query: 502 THLFSVIKNEHKICQFGRVFHQIPHGRATRPLGLLDLSVPT 380
TH SV+K K+C+ RV +Q H R R ++VPT
Sbjct: 240 THWRSVVKKGAKLCEDKRV-NQAKHKRHLRKTRAASVTVPT 279
>SB_38222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 356
Score = 28.3 bits (60), Expect = 6.1
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -1
Query: 502 THLFSVIKNEHKICQFGRVFHQIPHGRATRPLGLLDLSVPT 380
TH SV+K K+C+ RV +Q H R R ++VPT
Sbjct: 289 THWRSVVKKGAKLCEDKRV-NQAKHKRHLRKTRAASVTVPT 328
>SB_6135| Best HMM Match : CSD (HMM E-Value=5.4)
Length = 254
Score = 28.3 bits (60), Expect = 6.1
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -1
Query: 502 THLFSVIKNEHKICQFGRVFHQIPHGRATRPLGLLDLSVPT 380
TH SV+K K+C+ RV +Q H R R ++VPT
Sbjct: 198 THWRSVVKKGAKLCEDKRV-NQAKHKRHLRKTRAASVTVPT 237
>SB_41377| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 331
Score = 27.9 bits (59), Expect = 8.1
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +2
Query: 80 IIKNTSG-SFQRFTKIKHGKHAGATIFYRNCGRVQK*KVVE*TGIELLQQIQHGPANCYL 256
I+K+T G F R K K + RNC +++ K +E + ++L +I GP +
Sbjct: 148 IVKHTKGVCFSRRAKDSVKKES------RNCSSIEERKAIENSTVDLCPEISRGPCSTRP 201
Query: 257 NF 262
+F
Sbjct: 202 DF 203
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,814,304
Number of Sequences: 59808
Number of extensions: 470530
Number of successful extensions: 1176
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1175
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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