Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060078.seq
         (685 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U31351-1|AAB97618.1|  810|Drosophila melanogaster protein ( Dros...    31   1.5  
AF044287-1|AAC01743.1|  810|Drosophila melanogaster delta adapti...    31   1.5  
DQ902587-1|ABI94369.1| 2009|Drosophila melanogaster calmodulin-b...    29   5.9  
BT011188-1|AAR88549.1| 1034|Drosophila melanogaster RE06749p pro...    29   5.9  
AF002164-1|AAC14585.1| 1034|Drosophila melanogaster AP-3 delta-a...    29   5.9  
AE014298-1950|AAF48307.2| 1034|Drosophila melanogaster CG10986-P...    29   5.9  

>U31351-1|AAB97618.1|  810|Drosophila melanogaster protein (
           Drosophila melanogastergarnet mRNA, complete cds. ).
          Length = 810

 Score = 31.1 bits (67), Expect = 1.5
 Identities = 24/86 (27%), Positives = 36/86 (41%)
 Frame = +2

Query: 311 QDERKMSKRKKKVINNNKYILFNSWYTKIKQPEWPSSPAMWDLVKNTPELADFVFIFDHT 490
           +D +K  K+ KK       + +NS        E    P    +V  T ++ + V + D  
Sbjct: 723 KDGKKKHKKGKKSKKAKNKVAYNS------SSESEGEPKPLHIVNTTLDMPEGVSMSDSE 776

Query: 491 EKMGKKWPTDRHRRLQATTQQFQRAK 568
           +K GK  P D HR L       QRA+
Sbjct: 777 DKDGKYDPNDPHRALDIELTCNQRAE 802


>AF044287-1|AAC01743.1|  810|Drosophila melanogaster delta adaptin
           subunit of AP-3 protein.
          Length = 810

 Score = 31.1 bits (67), Expect = 1.5
 Identities = 24/86 (27%), Positives = 36/86 (41%)
 Frame = +2

Query: 311 QDERKMSKRKKKVINNNKYILFNSWYTKIKQPEWPSSPAMWDLVKNTPELADFVFIFDHT 490
           +D +K  K+ KK       + +NS        E    P    +V  T ++ + V + D  
Sbjct: 723 KDGKKKHKKGKKSKKAKNKVAYNS------SSESEGEPKPLHIVNTTLDMPEGVSMSDSE 776

Query: 491 EKMGKKWPTDRHRRLQATTQQFQRAK 568
           +K GK  P D HR L       QRA+
Sbjct: 777 DKDGKYDPNDPHRALDIELTCNQRAE 802


>DQ902587-1|ABI94369.1| 2009|Drosophila melanogaster
            calmodulin-binding transcriptionactivator protein.
          Length = 2009

 Score = 29.1 bits (62), Expect = 5.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 135  NMPEQQSSTETAAVCKNEKLLNKLESSSYNKSN 233
            N  +Q ++T TAA C N K  N L   S+  +N
Sbjct: 1021 NQQQQITTTSTAATCDNLKSANALSEDSHTVNN 1053


>BT011188-1|AAR88549.1| 1034|Drosophila melanogaster RE06749p
           protein.
          Length = 1034

 Score = 29.1 bits (62), Expect = 5.9
 Identities = 21/75 (28%), Positives = 32/75 (42%)
 Frame = +2

Query: 311 QDERKMSKRKKKVINNNKYILFNSWYTKIKQPEWPSSPAMWDLVKNTPELADFVFIFDHT 490
           +D +K  K+ KK       + +NS        E    P    +V  T ++ + V + D  
Sbjct: 767 KDGKKKHKKGKKSKKAKNKVAYNS------SSESEGEPKPLHIVNTTLDMPEGVSMSDSE 820

Query: 491 EKMGKKWPTDRHRRL 535
           +K GK  P D HR L
Sbjct: 821 DKDGKYDPNDPHRAL 835


>AF002164-1|AAC14585.1| 1034|Drosophila melanogaster AP-3
           delta-adaptin subunit protein.
          Length = 1034

 Score = 29.1 bits (62), Expect = 5.9
 Identities = 21/75 (28%), Positives = 32/75 (42%)
 Frame = +2

Query: 311 QDERKMSKRKKKVINNNKYILFNSWYTKIKQPEWPSSPAMWDLVKNTPELADFVFIFDHT 490
           +D +K  K+ KK       + +NS        E    P    +V  T ++ + V + D  
Sbjct: 767 KDGKKKHKKGKKSKKAKNKVAYNS------SSESEGEPKPLHIVNTTLDMPEGVSMSDSE 820

Query: 491 EKMGKKWPTDRHRRL 535
           +K GK  P D HR L
Sbjct: 821 DKDGKYDPNDPHRAL 835


>AE014298-1950|AAF48307.2| 1034|Drosophila melanogaster CG10986-PB
           protein.
          Length = 1034

 Score = 29.1 bits (62), Expect = 5.9
 Identities = 21/75 (28%), Positives = 32/75 (42%)
 Frame = +2

Query: 311 QDERKMSKRKKKVINNNKYILFNSWYTKIKQPEWPSSPAMWDLVKNTPELADFVFIFDHT 490
           +D +K  K+ KK       + +NS        E    P    +V  T ++ + V + D  
Sbjct: 767 KDGKKKHKKGKKSKKAKNKVAYNS------SSESEGEPKPLHIVNTTLDMPEGVSMSDSE 820

Query: 491 EKMGKKWPTDRHRRL 535
           +K GK  P D HR L
Sbjct: 821 DKDGKYDPNDPHRAL 835


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,163,879
Number of Sequences: 53049
Number of extensions: 676549
Number of successful extensions: 1869
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1869
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2992560750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)