Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060078.seq
         (685 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016683-1|AAB66199.3| 1360|Caenorhabditis elegans Hypothetical ...    30   1.3  
Z81117-7|CAB03315.2|  329|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AC024791-10|ABM74563.1| 1736|Caenorhabditis elegans Hypothetical...    29   3.1  
Z81508-8|CAI58634.1|  294|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z50110-3|CAA90445.2|  459|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z11505-6|CAA77586.2|  425|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AL132877-17|CAB60849.2|  269|Caenorhabditis elegans Hypothetical...    28   5.4  
U61958-2|AAB03182.3| 1067|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>AF016683-1|AAB66199.3| 1360|Caenorhabditis elegans Hypothetical
           protein K09F6.3 protein.
          Length = 1360

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
 Frame = +2

Query: 317 ERKMSKRKKKVINNNKYILFNSWYTKIKQP--EWPSSPAMWD---LVKNTPELADFVFIF 481
           +++M    KK IN    + F S   K+K     W S+  +     + ++TP LAD+  IF
Sbjct: 602 DQEMKNTGKKAIN---MVEFGSRLKKLKSELEGWKSNITVGGAHRIRRSTPSLADYAHIF 658

Query: 482 DHTEKMGKKWPTDRHRRLQATTQQFQRAKKD 574
            +  K+G     D  ++L    + F++  KD
Sbjct: 659 QNALKVG--GVDDDLKKLMDAVKDFEKTGKD 687


>Z81117-7|CAB03315.2|  329|Caenorhabditis elegans Hypothetical
           protein T06E6.6 protein.
          Length = 329

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -1

Query: 421 ATRPLGLLD--LSVPTVKQNVFIVVNHLLLAFGHFAFVLHDRHY 296
           A  PLG+L     VPT  Q  F+  N  ++   HF  V+ +R+Y
Sbjct: 72  AGTPLGILTEWFEVPTSFQTYFVFTNFFIVMVNHF-LVVENRYY 114


>AC024791-10|ABM74563.1| 1736|Caenorhabditis elegans Hypothetical
            protein Y47G6A.17 protein.
          Length = 1736

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 17/66 (25%), Positives = 31/66 (46%)
 Frame = +3

Query: 480  LITLKRWVKNGRPIDIVVFKRQRSNSSEQKKTDCGAYQRKFGRIKRELRNAR*ALFGVLQ 659
            L+T ++ +K     ++  F+R   NS E++ TD      +     R LRNA   +   L 
Sbjct: 1332 LVTCEQ-IKEDALAELSTFRRNNENSDERRMTDLRVELDRLRTTNRTLRNANEEMKNELS 1390

Query: 660  LVKRDI 677
             +K+ +
Sbjct: 1391 RLKQTV 1396


>Z81508-8|CAI58634.1|  294|Caenorhabditis elegans Hypothetical
           protein F20E11.15 protein.
          Length = 294

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
 Frame = -1

Query: 502 THLFSVIKNEHKICQFGRVFHQIPHGRATRPLGLLDLSVP---TVKQNVFIVV---NHLL 341
           T LF++I +   IC+ G+  ++ P       L L+D+ +     V  ++F+ V   N+LL
Sbjct: 186 TLLFAIILSLKLICKAGKTTNKDPTMNRANRLALIDVIIIFFFDVLLSIFLTVFDQNNLL 245

Query: 340 LAFGHFAFVLHD 305
              G FA VL +
Sbjct: 246 TNSGPFASVLRE 257


>Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical protein
            B0024.8 protein.
          Length = 1185

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +2

Query: 290  LNVMPVMQDERKMSKRKKKVINNNKYILFN--SWYTKIKQPEWPSSPAMWDLVKNT 451
            ++++P M    K S  K++     +Y   +  ++ +K KQ E  + P +WD VKN+
Sbjct: 1083 VSLLPAMTSATKKSNVKQRPFILTQYCELSKLAYKSKPKQVEVMALPLLWDSVKNS 1138


>Z50110-3|CAA90445.2|  459|Caenorhabditis elegans Hypothetical
           protein F18H3.4 protein.
          Length = 459

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 120 KSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQ 242
           K N+    EQ   TE  A+ +N+KLL  L   + ++  MDQ
Sbjct: 121 KRNLSARDEQALVTEIDALKRNKKLLESLAEITSHRKGMDQ 161


>Z11505-6|CAA77586.2|  425|Caenorhabditis elegans Hypothetical
           protein F59B2.9 protein.
          Length = 425

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 24/127 (18%), Positives = 55/127 (43%), Gaps = 3/127 (2%)
 Frame = +2

Query: 248 CYLNFLEKKNINYILNVMPVMQDERKMSKRKKKVINNNKYILFNSWYTK---IKQPEWPS 418
           C  +   K+ +N I + + +   E+K+  R K    +  Y++  +   +   ++   W +
Sbjct: 167 CGADIPAKRTMNRIFDKLTI---EKKLCIRPK---TSENYVIKQALRVEELFLRSARWMT 220

Query: 419 SPAMWDLVKNTPELADFVFIFDHTEKMGKKWPTDRHRRLQATTQQFQRAKKDRLRCLPTQ 598
              + +L     +L+D  F     E   +KW  ++  +++    Q+Q   + +L  L T 
Sbjct: 221 REHLLELNCIVADLSDHNFQCSDFEAFAEKWMNNKSSKVENLRFQWQSDVEFKLENLKTS 280

Query: 599 IWQN*KR 619
            W + +R
Sbjct: 281 RWDSTRR 287


>AL132877-17|CAB60849.2|  269|Caenorhabditis elegans Hypothetical
           protein Y105E8B.7 protein.
          Length = 269

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = -1

Query: 670 RLTSCKTPNKAYRAFRSSLLILPNLRW*APQSVFFCSLELLRCRLKTTMSIGR 512
           RL  C   +  Y+A    LL LP+ +    Q+    S +L RC   T M IGR
Sbjct: 211 RLNECTDSHVIYKA-SEYLLTLPDTK--LSQTTLKLSFDLSRCDSTTLMDIGR 260


>U61958-2|AAB03182.3| 1067|Caenorhabditis elegans Hypothetical
           protein C25A8.4 protein.
          Length = 1067

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
 Frame = +2

Query: 236 GPANCYLNFLEKKNINYIL-NVMPVMQDERKMSKRK--KKVINNNKYILFNSWYTKIKQ 403
           G +  YLN +   N+ + + NVM +M+  +    +   +KVI    +I FN++  K+ Q
Sbjct: 817 GDSEKYLNSILGDNMTFAIGNVMNIMEKYKFSGVQLDCEKVIRRGNHIYFNTFVKKLAQ 875


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,367,645
Number of Sequences: 27780
Number of extensions: 364002
Number of successful extensions: 1059
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1059
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)