Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060077.seq
(693 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC12B10.09 |||S-adenosylmethionine transporter |Schizosaccharo... 28 1.1
SPCC1672.02c |sap1||switch-activating protein Sap1|Schizosacchar... 28 1.5
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 28 1.5
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 27 3.4
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa... 26 4.5
SPAC926.03 |rlc1||myosin II regulatory light chain |Schizosaccha... 26 4.5
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce... 26 5.9
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R... 26 5.9
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 26 5.9
SPBC1921.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 7.9
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar... 25 7.9
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom... 25 7.9
>SPAC12B10.09 |||S-adenosylmethionine transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 345
Score = 28.3 bits (60), Expect = 1.1
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = -3
Query: 538 LRCRLKTTMSSVGHFFTHLFSVIKNEHKICQFGRVFHQIPHGR 410
++CR+K M + +FS + +K+CQFGR+ I HG+
Sbjct: 20 VQCRIKEIMYWNICLYWDVFSKLIIYNKVCQFGRI--HIFHGK 60
>SPCC1672.02c |sap1||switch-activating protein
Sap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 254
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +3
Query: 171 NEKLLNKLESSSYNKSNMDQLIAIVNFLKK 260
N+++ +L+ + + N+D L+A VNFL K
Sbjct: 143 NDEINERLKKLTEEQQNVDMLVAKVNFLSK 172
>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1471
Score = 27.9 bits (59), Expect = 1.5
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Frame = +2
Query: 251 LEKKNINYILNVMPVMQDERKMSKRKKKVINNNKYILFNS---WYTKIKQPEWPSSPAMW 421
L +K N ++ V + + K + +K V+ N IL NS W IK+P S P
Sbjct: 904 LYEKQKNLQASITEVSK-QLKSNSKKVTVLRNKLNILNNSLSKWKCLIKKPSDFSEPVSM 962
Query: 422 DLVKNTPELADFV 460
D N +L +
Sbjct: 963 DFTSNDEQLVQLL 975
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 26.6 bits (56), Expect = 3.4
Identities = 8/31 (25%), Positives = 19/31 (61%)
Frame = +2
Query: 290 PVMQDERKMSKRKKKVINNNKYILFNSWYTK 382
P++ + +K+S + K++ +N Y N W+ +
Sbjct: 1060 PILPNLQKLSTQYSKIVRDNDYGNVNCWFNR 1090
>SPAC1783.07c |pap1|caf3, caf3|transcription factor
Caf3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 552
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/42 (30%), Positives = 26/42 (61%), Gaps = 5/42 (11%)
Frame = +2
Query: 479 EKMGKKMAD-----RRHRRLQATTQQFQRAKKDRLRCLPTQI 589
+K+G+K +D +R + +A + F++ K+D L+ L TQ+
Sbjct: 67 KKIGRKNSDQEPSSKRKAQNRAAQRAFRKRKEDHLKALETQV 108
>SPAC926.03 |rlc1||myosin II regulatory light chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 184
Score = 26.2 bits (55), Expect = 4.5
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Frame = +1
Query: 487 G*KNGRPTTSSSSSDNAAIPASKKRQT---AVLTNANLAELKESCEMRDK 627
G K +++++SS A A+K+ + A LT++ + ELKE+ + DK
Sbjct: 10 GAKRAPFSSNTTSSQRVAAQAAKRASSGAFAQLTSSQIQELKEAFALLDK 59
>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 550
Score = 25.8 bits (54), Expect = 5.9
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +3
Query: 444 NWQILCSFLITLKRWVKKWPTDDIVVFKRQRSNS 545
NWQ S L+ + W+ + T+ V+ ++ R S
Sbjct: 108 NWQEFSSILVCVPAWIANYVTNAEVIGEKFRKES 141
>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
Res1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 637
Score = 25.8 bits (54), Expect = 5.9
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = +3
Query: 63 NISSRIQAGRFKGLQKSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQ 230
++SS+ + F ++ + EQ S + K ++LN L YN N DQ
Sbjct: 579 SLSSKHEVDLFTAENEAAREKLVEQLCSLQAQRKQKINEILNLLSMGMYNTINTDQ 634
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.8 bits (54), Expect = 5.9
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = -3
Query: 301 LHDRHYVEDIVNVLFF 254
L+DR YVE I+++LFF
Sbjct: 253 LYDRVYVEKILDILFF 268
>SPBC1921.04c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 117
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/35 (28%), Positives = 16/35 (45%)
Frame = +3
Query: 498 WPTDDIVVFKRQRSNSSEQKKTDCGAYQRKFGRIK 602
WPT D ++ SEQ + Y R G+++
Sbjct: 42 WPTYDAQTIPWKKKKKSEQHELWASVYNRTIGKLQ 76
>SPAC9G1.05 |||actin cortical patch component Aip1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 595
Score = 25.4 bits (53), Expect = 7.9
Identities = 8/32 (25%), Positives = 15/32 (46%)
Frame = +3
Query: 498 WPTDDIVVFKRQRSNSSEQKKTDCGAYQRKFG 593
WPT D+++ + N + +DC +G
Sbjct: 282 WPTKDLIIVVNSKGNLTYLNPSDCKVIDTIYG 313
>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 762
Score = 25.4 bits (53), Expect = 7.9
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +2
Query: 317 SKRKKKVINNNKYILFN-SWYTKIKQPEWP-SSPAMWDLVKNTPEL 448
S R++ V NNN +FN S++ KI + + +WD ++N +L
Sbjct: 232 SLRERFVDNNNSDYIFNVSYHKKIPADGFSLYTREIWDTIENNKDL 277
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,980,836
Number of Sequences: 5004
Number of extensions: 64577
Number of successful extensions: 239
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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