Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060077.seq
         (693 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50241| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.22 
SB_25877| Best HMM Match : TP1 (HMM E-Value=8.5)                       31   1.2  
SB_6631| Best HMM Match : SOCS_box (HMM E-Value=1.5e-10)               29   2.7  
SB_13733| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_47960| Best HMM Match : Extensin_2 (HMM E-Value=0.54)               29   4.7  
SB_38410| Best HMM Match : 7tm_1 (HMM E-Value=0)                       29   4.7  
SB_22629| Best HMM Match : CDC37 (HMM E-Value=3.7)                     28   6.2  
SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.2  
SB_57364| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_38222| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_6135| Best HMM Match : CSD (HMM E-Value=5.4)                        28   6.2  
SB_14926| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_50241| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 131

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 24/108 (22%), Positives = 50/108 (46%), Gaps = 3/108 (2%)
 Frame = +2

Query: 251 LEKKNINYILNVMPVMQDERKMSKRKKKVINNNKY---ILFNSWYTKIKQPEWPSSPAMW 421
           +E K + Y      V +DE K+  RK+ +    +Y   ILFN++    ++ +W  S + W
Sbjct: 26  IEAKTMKYKYGCSDVPRDE-KLDLRKRSLYYLERYFYFILFNTYLNMERRSKWDRSFSQW 84

Query: 422 DLVKNTPELADFVFIFDHTEKMGKKMADRRHRRLQATTQQFQRAKKDR 565
                  E+A    ++D  +  G    ++   RL+A   +++ + + +
Sbjct: 85  -----MTEVASSAGVYDILDNFGFHDFEKTEERLRALRWRWRESYRGK 127


>SB_25877| Best HMM Match : TP1 (HMM E-Value=8.5)
          Length = 139

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 287 MPVMQDERKMSKRKKKVINNNKYILFNSWYTKIK 388
           +PV    +++   + K  NN KY L   WY+K++
Sbjct: 7   LPVQNQAKRLRTWRSKTRNNTKYKLICIWYSKVR 40


>SB_6631| Best HMM Match : SOCS_box (HMM E-Value=1.5e-10)
          Length = 330

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 501 PTDDIVVFKRQRSNSSEQKKTDCGAYQRKFGRIKREL 611
           P D  ++F+   SN S Q ++  G YQ  F R + +L
Sbjct: 239 PEDASMLFELNTSNQSPQSRSTAGVYQLAFSRCQGKL 275


>SB_13733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1455

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 27/118 (22%), Positives = 57/118 (48%), Gaps = 8/118 (6%)
 Frame = +2

Query: 233  NCYCKFLEKKNINYILNVMPVMQDERKMSKRKKKVINNNKYILFNSWYTKI---KQPEWP 403
            N Y +  + +  +Y+ +   V Q +  + K+  +++  ++++  +  Y  +   ++ EW 
Sbjct: 919  NQYDRNFQDRRGHYLDDNRHVHQ-QTDLEKKIHEILTCDEHMAAHDPYAGLMTRREKEWI 977

Query: 404  SSPAMWDLVKNTPELADFVFIFDHTEKMGKKMADRRHRR-LQATTQ----QFQRAKKD 562
                +  L  +TP+L DF F      K  K+ A +  RR  + TTQ    QF+R +++
Sbjct: 978  IKIQLLQLTSSTPDLDDFYFQTYIRRKQAKERAKQGERRDGENTTQMALPQFEREERN 1035


>SB_47960| Best HMM Match : Extensin_2 (HMM E-Value=0.54)
          Length = 710

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 200 RFQFIQQLFIFAHGRSFCRRLLLRHVYH 117
           RF    Q  I+AH  SF +R+LLR + H
Sbjct: 22  RFPRNPQKLIYAHQNSFKKRILLRRIEH 49


>SB_38410| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 368

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -3

Query: 373 PTVKQNVFIVVNHLLLAFGHFAFVLHDRHYVEDIVNVLF 257
           P    N+ +++ +L  A   + +  HDR + E   N+LF
Sbjct: 313 PREVHNILLLMGYLNSALNPYMYSFHDRQFKEAFKNILF 351


>SB_22629| Best HMM Match : CDC37 (HMM E-Value=3.7)
          Length = 504

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -3

Query: 490 THLFSVIKNEHKICQFGRVFHQIPHGRATRPLGLLDLSVPT 368
           TH  SV+K   K+C+  RV +Q  H R  R      ++VPT
Sbjct: 395 THWRSVVKKGAKLCEDKRV-NQAKHKRHLRKTRAASVTVPT 434


>SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1894

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = -3

Query: 667 LKSRLTSCKTPNKAYRAFRSSLLILPNLRW*APQSVFFCSL 545
           LK+   +CKT N+  RA++S L  L  L    PQ V   SL
Sbjct: 256 LKTHAIACKTNNELMRAYKSHLANLELLV--GPQEVLLASL 294


>SB_57364| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 318

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -3

Query: 490 THLFSVIKNEHKICQFGRVFHQIPHGRATRPLGLLDLSVPT 368
           TH  SV+K   K+C+  RV +Q  H R  R      ++VPT
Sbjct: 240 THWRSVVKKGAKLCEDKRV-NQAKHKRHLRKTRAASVTVPT 279


>SB_38222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 356

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -3

Query: 490 THLFSVIKNEHKICQFGRVFHQIPHGRATRPLGLLDLSVPT 368
           TH  SV+K   K+C+  RV +Q  H R  R      ++VPT
Sbjct: 289 THWRSVVKKGAKLCEDKRV-NQAKHKRHLRKTRAASVTVPT 328


>SB_6135| Best HMM Match : CSD (HMM E-Value=5.4)
          Length = 254

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -3

Query: 490 THLFSVIKNEHKICQFGRVFHQIPHGRATRPLGLLDLSVPT 368
           TH  SV+K   K+C+  RV +Q  H R  R      ++VPT
Sbjct: 198 THWRSVVKKGAKLCEDKRV-NQAKHKRHLRKTRAASVTVPT 237


>SB_14926| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1638

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +3

Query: 456  LCSFLITLKRWVKKWPTDDIVVFKRQRSNSSEQ-KKTDCGAYQRKFGRIKRELRN 617
            + S+L+TL  +   WP D +V   R R  +  + +       +  F R+K EL++
Sbjct: 1340 IASWLVTLYEFAVSWPIDWLVNHIRTRGQAKNRTRPRRQSKVELDFSRVKTELQS 1394


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,240,666
Number of Sequences: 59808
Number of extensions: 486847
Number of successful extensions: 1387
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1386
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)