Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060077.seq
(693 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016683-1|AAB66199.3| 1360|Caenorhabditis elegans Hypothetical ... 31 1.0
Z50110-3|CAA90445.2| 459|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical pr... 29 2.4
U41009-8|AAA82282.2| 500|Caenorhabditis elegans Hypothetical pr... 29 2.4
U13875-11|AAA21158.1| 1193|Caenorhabditis elegans Rna polymerase... 29 2.4
Z81117-7|CAB03315.2| 329|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z81508-8|CAI58634.1| 294|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z81460-3|CAB03829.1| 1228|Caenorhabditis elegans Hypothetical pr... 29 4.2
AC024791-10|ABM74563.1| 1736|Caenorhabditis elegans Hypothetical... 28 7.3
AL034393-16|CAA22331.2| 286|Caenorhabditis elegans Hypothetical... 27 9.6
AC006733-4|AAF60486.1| 319|Caenorhabditis elegans Dehydrogenase... 27 9.6
>AF016683-1|AAB66199.3| 1360|Caenorhabditis elegans Hypothetical
protein K09F6.3 protein.
Length = 1360
Score = 30.7 bits (66), Expect = 1.0
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Frame = +2
Query: 305 ERKMSKRKKKVINNNKYILFNSWYTKIKQP--EWPSSPAMWD---LVKNTPELADFVFIF 469
+++M KK IN + F S K+K W S+ + + ++TP LAD+ IF
Sbjct: 602 DQEMKNTGKKAIN---MVEFGSRLKKLKSELEGWKSNITVGGAHRIRRSTPSLADYAHIF 658
Query: 470 DHTEKMGKKMADRRHRRLQATTQQFQRAKKD 562
+ K+G D ++L + F++ KD
Sbjct: 659 QNALKVGG--VDDDLKKLMDAVKDFEKTGKD 687
>Z50110-3|CAA90445.2| 459|Caenorhabditis elegans Hypothetical
protein F18H3.4 protein.
Length = 459
Score = 29.9 bits (64), Expect = 1.8
Identities = 23/76 (30%), Positives = 35/76 (46%)
Frame = +3
Query: 108 KSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLKKRTLTISST* 287
K N+ EQ TE A+ +N+KLL L + ++ MDQ + N ++K + T
Sbjct: 121 KRNLSARDEQALVTEIDALKRNKKLLESLAEITSHRKGMDQELE-KNRIQKHKVYFELT- 178
Query: 288 CLSCRTNAKCPNARRR 335
SC+ K RR
Sbjct: 179 --SCQNRFKQMKQERR 192
>Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical protein
B0024.8 protein.
Length = 1185
Score = 29.5 bits (63), Expect = 2.4
Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 2/102 (1%)
Frame = +2
Query: 278 LNVMPVMQDERKMSKRKKKVINNNKYILFN--SWYTKIKQPEWPSSPAMWDLVKNTPELA 451
++++P M K S K++ +Y + ++ +K KQ E + P +WD VKN+
Sbjct: 1083 VSLLPAMTSATKKSNVKQRPFILTQYCELSKLAYKSKPKQVEVMALPLLWDSVKNSAPDV 1142
Query: 452 DFVFIFDHTEKMGKKMADRRHRRLQATTQQFQRAKKDRLRCL 577
D + K K+ + + L T + +K +L L
Sbjct: 1143 DNKKATQYLAKTLAKLIGEK-QLLDLATSELDPNRKKQLDAL 1183
>U41009-8|AAA82282.2| 500|Caenorhabditis elegans Hypothetical
protein C06E7.4 protein.
Length = 500
Score = 29.5 bits (63), Expect = 2.4
Identities = 23/89 (25%), Positives = 43/89 (48%)
Frame = +2
Query: 299 QDERKMSKRKKKVINNNKYILFNSWYTKIKQPEWPSSPAMWDLVKNTPELADFVFIFDHT 478
+++ K ++RK V+ + K+P + S + L + AD+ + HT
Sbjct: 407 ENDEKRNRRKSSVLEKTAAFEIEARRNDRKEPSFLSRSSHQLLTTSEIPPADYSPLSIHT 466
Query: 479 EKMGKKMADRRHRRLQATTQQFQRAKKDR 565
+++G A+RR R+Q QQ Q + +DR
Sbjct: 467 KEIGGP-AERRIYRIQ--KQQQQHSSEDR 492
>U13875-11|AAA21158.1| 1193|Caenorhabditis elegans Rna polymerase ii
(b) subunit protein2 protein.
Length = 1193
Score = 29.5 bits (63), Expect = 2.4
Identities = 21/63 (33%), Positives = 28/63 (44%)
Frame = -3
Query: 691 LSRGATLLLKSRLTSCKTPNKAYRAFRSSLLILPNLRW*APQSVFFCSLELLRCRLKTTM 512
+S GAT L+ RL P Y L+++ NLR S E CR KT +
Sbjct: 1101 ISHGATQFLRERLFEVSDPYHVYVCNNCGLIVVANLR--------TNSFECKACRNKTQV 1152
Query: 511 SSV 503
S+V
Sbjct: 1153 SAV 1155
>Z81117-7|CAB03315.2| 329|Caenorhabditis elegans Hypothetical
protein T06E6.6 protein.
Length = 329
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -3
Query: 409 ATRPLGLLD--LSVPTVKQNVFIVVNHLLLAFGHFAFVLHDRHY 284
A PLG+L VPT Q F+ N ++ HF V+ +R+Y
Sbjct: 72 AGTPLGILTEWFEVPTSFQTYFVFTNFFIVMVNHF-LVVENRYY 114
>Z81508-8|CAI58634.1| 294|Caenorhabditis elegans Hypothetical
protein F20E11.15 protein.
Length = 294
Score = 28.7 bits (61), Expect = 4.2
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Frame = -3
Query: 490 THLFSVIKNEHKICQFGRVFHQIPHGRATRPLGLLDLSVP---TVKQNVFIVV---NHLL 329
T LF++I + IC+ G+ ++ P L L+D+ + V ++F+ V N+LL
Sbjct: 186 TLLFAIILSLKLICKAGKTTNKDPTMNRANRLALIDVIIIFFFDVLLSIFLTVFDQNNLL 245
Query: 328 LAFGHFAFVLHD 293
G FA VL +
Sbjct: 246 TNSGPFASVLRE 257
>Z81460-3|CAB03829.1| 1228|Caenorhabditis elegans Hypothetical protein
C04A11.3 protein.
Length = 1228
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +2
Query: 452 DFVF-IFDHTEKMGKKMADRRHRRLQATTQQFQRAKKDRLRCLPTQIWQ 595
DF+ + + E M ++MA++ R+ + +QF K + LR IW+
Sbjct: 967 DFLMQLQQNAEAMLQRMAEKHKERMASIEKQFLMQKHNLLRAKENNIWE 1015
>AC024791-10|ABM74563.1| 1736|Caenorhabditis elegans Hypothetical
protein Y47G6A.17 protein.
Length = 1736
Score = 27.9 bits (59), Expect = 7.3
Identities = 17/64 (26%), Positives = 31/64 (48%)
Frame = +3
Query: 468 LITLKRWVKKWPTDDIVVFKRQRSNSSEQKKTDCGAYQRKFGRIKRELRNAR*ALFGVLQ 647
L+T ++ +K+ ++ F+R NS E++ TD + R LRNA + L
Sbjct: 1332 LVTCEQ-IKEDALAELSTFRRNNENSDERRMTDLRVELDRLRTTNRTLRNANEEMKNELS 1390
Query: 648 LVKR 659
+K+
Sbjct: 1391 RLKQ 1394
>AL034393-16|CAA22331.2| 286|Caenorhabditis elegans Hypothetical
protein Y18D10A.21 protein.
Length = 286
Score = 27.5 bits (58), Expect = 9.6
Identities = 19/98 (19%), Positives = 44/98 (44%)
Frame = -3
Query: 541 LLRCRLKTTMSSVGHFFTHLFSVIKNEHKICQFGRVFHQIPHGRATRPLGLLDLSVPTVK 362
+++C K + + ++++F + + HK F + +H G+ T L ++ +
Sbjct: 62 VIKCLSKVKQEVIVNMYSYIFEIQNSRHKYGVFTQFYHVFEPGQ-TMDL-IIGIRASKDL 119
Query: 361 QNVFIVVNHLLLAFGHFAFVLHDRHYVEDIVNVLFFKK 248
+ + HL+ FG + H R + +D + +F K
Sbjct: 120 SFTELALEHLMNPFGVLQ-ISHYRSWKKDDSDKEWFNK 156
>AC006733-4|AAF60486.1| 319|Caenorhabditis elegans Dehydrogenases,
short chain protein9 protein.
Length = 319
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/64 (20%), Positives = 32/64 (50%)
Frame = +2
Query: 245 KFLEKKNINYILNVMPVMQDERKMSKRKKKVINNNKYILFNSWYTKIKQPEWPSSPAMWD 424
+F++ +N+ + N V++ E + + ++ NN Y + + +P + + P +WD
Sbjct: 69 RFVDHQNMEEVKNFFEVVEKEHQ---GQLDILVNNAYQGVTAISENMGKPFYETDPYVWD 125
Query: 425 LVKN 436
+ N
Sbjct: 126 TINN 129
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,703,986
Number of Sequences: 27780
Number of extensions: 373301
Number of successful extensions: 1192
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1192
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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