Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060072.seq
         (685 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    24   1.0  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        22   4.1  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    22   4.1  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    22   4.1  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   7.1  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 510 EVMLGLLPGGGGTQRLPALTSIPTTLDLAL 599
           E  +G + G GGT  +   TS+ T++ LA+
Sbjct: 284 EPAVGTMTGAGGTAIVSISTSVSTSVYLAI 313


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 110 LGLLERHTFGY 78
           LG++ RH FGY
Sbjct: 7   LGIMHRHCFGY 17


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 543 GTQRLPALTSIPTTLDLALTGKTV 614
           G     ALT +    ++A+TGKTV
Sbjct: 249 GLDSFMALTVMQVLKEMAMTGKTV 272


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 543 GTQRLPALTSIPTTLDLALTGKTV 614
           G     ALT +    ++A+TGKTV
Sbjct: 249 GLDSFMALTVMQVLKEMAMTGKTV 272


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 129 NLHFVCTWLAGTAYFRLCT 73
           +L F C ++  T +F LCT
Sbjct: 82  HLLFYCPFIIFTVHFLLCT 100


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,451
Number of Sequences: 336
Number of extensions: 3920
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)