Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060072.seq
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom...    32   0.067
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|...    29   0.83 
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb...    27   3.3  
SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr...    27   3.3  
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual     25   7.7  
SPBC543.08 |||phosphoinositide biosynthesis protein |Schizosacch...    25   7.7  
SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase Hat1|Schi...    25   7.7  
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    25   7.7  

>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 32.3 bits (70), Expect = 0.067
 Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
 Frame = +1

Query: 259 VIISGKPGCFIAGADISM----IENCKTKEEVVSLSKRGHEIFRRIEQSRKPYIAAIQGS 426
           +I+ G    F +G DI      I++ K  E   + ++  + +   +   +KP +A + G 
Sbjct: 104 IILKGNGRSFSSGGDIKAAALSIQDGKLPEVRHAFAQE-YRLSHTLATYQKPVVALMNGI 162

Query: 427 CLGGGLETALACKYRIAVKDS 489
            +GGG   A+   +RIA +D+
Sbjct: 163 TMGGGSGLAMHVPFRIACEDT 183


>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 540

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +2

Query: 113 HTKCKLVNGVYVVTLDSPNVKVNSLNTQVMEEVSNIVNEIETNSGIE 253
           +  CKL   V +VT   P   V +LN  + + +S  +N  +TN  I+
Sbjct: 63  YDNCKLSICVPIVTTCIPYHSVENLNFNIRQNISTTLNLEKTNDSIK 109


>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 258 CTSIPEFVSISFTMLLTSSITWVLSEFTL 172
           CT IP   S++ T  +    TW L E+T+
Sbjct: 177 CTGIP--FSVAITFFIIGLFTWTLVEYTM 203


>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
 Frame = -3

Query: 482 FTAMRYLHARAVSNPPPRQLPCIAAIYGFRDCSILLNISCPLLDRL--TTSSFVLQFSIM 309
           +TA+  +H   +  PPP+ LP I  I   R CS  L  + P+L +L  T  + VL+   M
Sbjct: 254 YTAVPTIHQILLRTPPPKPLPRIRFI---RSCSSPL--APPVLSKLEATFRAPVLEAYAM 308

Query: 308 LISAPAMKHPGLPDIM 261
             ++  M    LP ++
Sbjct: 309 TEASHQMTTNPLPPLV 324


>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1029

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -3

Query: 392 DCSILLNISCPLLDRLTTSSFVLQFSIMLISAPAMKHPGLPDIMTA 255
           D S LLN    +L+ L  +   ++    L   P M+H  + D+MTA
Sbjct: 499 DKSQLLNAYQAVLNCLQDNDLPVRIQAALALQPLMRHLEVHDVMTA 544


>SPBC543.08 |||phosphoinositide biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 250

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 109 STYKMQIGQWSLRSHFGLSK 168
           S Y + + +WS+ S+FG SK
Sbjct: 38  SIYSIYVDKWSITSYFGNSK 57


>SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase
           Hat1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -3

Query: 407 IYGFRDCSILLNISCPLL 354
           IYG++D ++ +   CPL+
Sbjct: 45  IYGYKDLNVTITYECPLM 62


>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +1

Query: 307 SMIENCKTKEEVVSLSKRGHEIFRRIEQSRKPYIAAIQGSCLGGGLET 450
           S + +  T  E VS +K  H++ +   +S+KP + A +G  +   LET
Sbjct: 578 SCVMHIHTAVEEVSFAKLLHKLDKTNRKSKKPPMFATKGMKIIAELET 625


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,019,620
Number of Sequences: 5004
Number of extensions: 64864
Number of successful extensions: 197
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)