Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060072.seq
(685 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0400 - 3159370-3159385,3159599-3159703,3159972-3160006,316... 53 2e-07
01_03_0216 + 13870364-13870472,13871406-13871477,13871603-138716... 52 3e-07
02_02_0418 + 10000744-10000840,10000952-10001023,10001786-100018... 52 4e-07
05_04_0012 + 17145112-17145205,17145681-17145752,17145832-171459... 48 5e-06
02_05_0164 + 26405052-26405208,26405304-26405473,26406278-264063... 45 5e-05
02_05_0163 + 26400486-26400621,26401477-26401646,26402623-264027... 38 7e-04
03_02_0770 + 11038971-11039392,11040071-11040353,11040697-11040798 40 0.002
06_03_0633 + 22960514-22960619,22961402-22961503,22961850-22961908 30 2.0
11_01_0593 - 4705565-4705822,4705916-4706065,4706160-4706307,470... 29 2.6
10_02_0117 + 5471920-5472401,5472602-5472668,5472956-5473012,547... 29 2.6
07_03_0744 + 21121757-21122202,21122316-21122737,21122992-211231... 29 2.6
07_03_1765 - 29329350-29331290,29331705-29331827,29332205-29333026 29 3.4
09_06_0229 + 21709510-21709532,21710021-21710041,21712386-21713577 29 4.5
03_06_0658 - 35335639-35335731,35335814-35335871,35336213-353363... 29 4.5
03_06_0118 + 31795050-31796404,31796513-31797083 28 6.0
10_08_1007 - 22210263-22210400,22210506-22210547,22210626-222107... 28 7.9
10_08_0738 - 20212220-20212282,20212387-20212593,20212690-202128... 28 7.9
09_02_0103 - 4324578-4324639,4324848-4324983 28 7.9
07_03_1001 - 23224372-23224385,23225451-23227374 28 7.9
06_03_0021 + 15520342-15520443,15522217-15522867,15522980-155231... 28 7.9
04_04_1100 + 30894575-30895012,30896082-30897044 28 7.9
03_06_0497 - 34332310-34334415 28 7.9
01_06_0515 - 29959149-29959253,29959510-29959633,29959702-299597... 28 7.9
>05_01_0400 -
3159370-3159385,3159599-3159703,3159972-3160006,
3160134-3160272,3160457-3160605,3161052-3161173,
3161296-3161417,3161779-3162033,3162108-3162271,
3162311-3162489,3162593-3162767,3162916-3163002,
3163144-3163446,3163539-3163594,3163813-3163894,
3163972-3164039,3164779-3164835,3164926-3164991,
3165121-3165192,3167363-3167459
Length = 782
Score = 52.8 bits (121), Expect = 2e-07
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Frame = +1
Query: 256 AVIISGKPGCFIAGADISMIENC-KTKEEVVSLSKRGHEIFRR-IEQSRKPYIAAIQGSC 429
A++++GK G F G DI+ + K E + + ++ +E + KP +AAI G
Sbjct: 52 AIVVTGKGGVFSGGLDINTFGAIQRNKAEQLKVDYVSIDVMTNTLEAAGKPSVAAINGPA 111
Query: 430 LGGGLETALACKYRIAVKDSKTG 498
LGGGLE ++ C+ RI++ ++ G
Sbjct: 112 LGGGLEISMVCQARISIPTAQLG 134
Score = 45.6 bits (103), Expect = 4e-05
Identities = 20/53 (37%), Positives = 33/53 (62%)
Frame = +3
Query: 510 EVMLGLLPGGGGTQRLPALTSIPTTLDLALTGKTVKADKAKKLGNCRSVSFPS 668
E+ LG++P GGTQRLP L + L++ L K +KA++A +L ++ P+
Sbjct: 137 ELQLGVIPAFGGTQRLPRLVGLTKALEMMLMSKPIKAEEAHQLALIDAIVSPN 189
>01_03_0216 +
13870364-13870472,13871406-13871477,13871603-13871668,
13871767-13871823,13871917-13871984,13872068-13872149,
13872445-13872500,13872645-13872947,13873042-13873128,
13873199-13873373,13873481-13873602,13873689-13873852,
13873925-13874179,13874312-13874433,13874542-13874663,
13875111-13875259,13875346-13875484,13875715-13875750
Length = 727
Score = 52.4 bits (120), Expect = 3e-07
Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Frame = +1
Query: 256 AVIISGKPGCFIAGADISMIENCKT-KEEVVSLSKRGHEIFR-RIEQSRKPYIAAIQGSC 429
A++++GK G F G DIS + + K E + +I +E + KP +AAI G
Sbjct: 56 AIVVTGKGGKFSGGFDISSFGSVQGGKVEQPKVGYISIDIITDTLEAATKPSVAAIDGLA 115
Query: 430 LGGGLETALACKYRIAVKDSKTG 498
LGGGLE A+AC RI+ ++ G
Sbjct: 116 LGGGLEVAMACHARISTPTAQLG 138
Score = 46.4 bits (105), Expect = 2e-05
Identities = 20/44 (45%), Positives = 29/44 (65%)
Frame = +3
Query: 510 EVMLGLLPGGGGTQRLPALTSIPTTLDLALTGKTVKADKAKKLG 641
E+ LG++PG GGTQRLP L + L++ L K +K +A +LG
Sbjct: 141 ELQLGVIPGFGGTQRLPRLVGLTKALEMMLLSKPIKGAEAHQLG 184
>02_02_0418 +
10000744-10000840,10000952-10001023,10001786-10001848,
10001952-10002008,10002159-10002226,10002327-10002408,
10002517-10002572,10002934-10003236,10003638-10003724,
10004454-10004628,10004813-10004934,10005171-10005334,
10006201-10006455,10006979-10007100,10007220-10007341,
10007452-10007600,10007649-10007652
Length = 665
Score = 52.0 bits (119), Expect = 4e-07
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Frame = +1
Query: 256 AVIISGKPGCFIAGADISMIENCKTKEEVVSLSKRGHEIFRRI-EQSRKPYIAAIQGSCL 432
A++++G G F G DI++ V + E+ + E +KP +AAIQG L
Sbjct: 52 AIVLTGAGGKFCGGFDINVFTEVHKTGNVSLMPDVSVELVSNLMEAGKKPSVAAIQGLAL 111
Query: 433 GGGLETALACKYRIAVKDSKTG 498
GGGLE + C RI+ +++ G
Sbjct: 112 GGGLELTMGCHARISTPEAQLG 133
Score = 45.6 bits (103), Expect = 4e-05
Identities = 19/44 (43%), Positives = 29/44 (65%)
Frame = +3
Query: 510 EVMLGLLPGGGGTQRLPALTSIPTTLDLALTGKTVKADKAKKLG 641
E+ LG++PG GGTQRLP L +P +++ L K + A + K+ G
Sbjct: 136 ELTLGIIPGFGGTQRLPRLVGLPKAIEMMLQSKFITAKEGKEGG 179
>05_04_0012 +
17145112-17145205,17145681-17145752,17145832-17145911,
17146059-17146175,17146282-17146363,17147086-17147141,
17147258-17147560,17147658-17147744,17148118-17148292,
17148370-17148491,17149028-17149191,17149277-17149531,
17150419-17150540,17150656-17150777,17151302-17151450,
17151565-17151703,17151831-17151866
Length = 724
Score = 48.4 bits (110), Expect = 5e-06
Identities = 21/44 (47%), Positives = 29/44 (65%)
Frame = +3
Query: 510 EVMLGLLPGGGGTQRLPALTSIPTTLDLALTGKTVKADKAKKLG 641
E+ LG++PG GGTQRLP L +P L++ L K +K +A K G
Sbjct: 138 ELQLGIIPGLGGTQRLPRLVGLPKALEMLLMSKPLKGVEAHKFG 181
Score = 46.8 bits (106), Expect = 2e-05
Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Frame = +1
Query: 256 AVIISGKPGCFIAGADISMIENCKTKE-EVVS-LSKRGHEI--FRRIEQSRKPYIAAIQG 423
A++++G G F G DI+ + +K+ V+S ++K + F + + KP +AAI G
Sbjct: 51 AIVLTGAKGRFSGGFDINAFDKKPSKDCPVLSFVNKLNIYVVKFMLLPDAPKPSVAAIDG 110
Query: 424 SCLGGGLETALACKYRIAVKDSKTG 498
LGGGLE + C R++ ++ G
Sbjct: 111 VALGGGLELVMVCHARVSTSSAQLG 135
>02_05_0164 +
26405052-26405208,26405304-26405473,26406278-26406352,
26406570-26406660,26406768-26406848,26407192-26407353,
26407425-26407501,26407670-26407846
Length = 329
Score = 45.2 bits (102), Expect = 5e-05
Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Frame = +1
Query: 259 VIISGKPGCFIAGADIS---MIENCKTKEEVVSLSKRGHEIFRRIEQSRKPYIAAIQGSC 429
++ S P F AGAD+ ++ C+ +E V SL F E P IA ++G+
Sbjct: 93 LLASSVPKVFCAGADLKERRLMSPCEVREFVNSL----RSTFLSFEALSIPTIAIVEGAA 148
Query: 430 LGGGLETALACKYRI 474
GGGLE AL+C RI
Sbjct: 149 FGGGLELALSCDLRI 163
>02_05_0163 +
26400486-26400621,26401477-26401646,26402623-26402713,
26402822-26402873,26403462-26403565,26403648-26403724,
26403890-26404069
Length = 269
Score = 38.3 bits (85), Expect(2) = 7e-04
Identities = 17/33 (51%), Positives = 23/33 (69%)
Frame = +1
Query: 400 PYIAAIQGSCLGGGLETALACKYRIAVKDSKTG 498
P IA I+G+ LGGGLE AL+C RI +++ G
Sbjct: 107 PTIAVIEGAALGGGLELALSCDLRICGENATLG 139
Score = 37.1 bits (82), Expect = 0.013
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +3
Query: 510 EVMLGLLPGGGGTQRLPALTSIPTTLDLALTGKTVKADKAKKLG 641
E L ++PG GGTQRLP + ++ TG+ A +A +G
Sbjct: 142 ETGLAIIPGAGGTQRLPRIVGRSRAKEMIFTGRRCNATEAVMMG 185
Score = 22.2 bits (45), Expect(2) = 7e-04
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +1
Query: 259 VIISGKPGCFIAGADISMI 315
++ S PG F AGAD+ +
Sbjct: 86 LVTSSVPGVFCAGADLKAL 104
>03_02_0770 + 11038971-11039392,11040071-11040353,11040697-11040798
Length = 268
Score = 39.5 bits (88), Expect = 0.002
Identities = 24/80 (30%), Positives = 43/80 (53%)
Frame = +1
Query: 253 SAVIISGKPGCFIAGADISMIENCKTKEEVVSLSKRGHEIFRRIEQSRKPYIAAIQGSCL 432
+AV+++G+ F +G D++ E K +V + + ++E+ RKP + AI G +
Sbjct: 59 AAVVLAGRGRAFCSGVDLTAAEEV-FKGDVKDPAA---DPVVQMERCRKPIVGAIAGFAV 114
Query: 433 GGGLETALACKYRIAVKDSK 492
G E ALAC +A + +K
Sbjct: 115 TAGFEIALACDILVAGRSAK 134
>06_03_0633 + 22960514-22960619,22961402-22961503,22961850-22961908
Length = 88
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +2
Query: 92 AVPASQVHTKCKLV-NGVYVVTLDSPNVKVNSLNTQVMEEVSNIVNEIETNSGIE 253
A A++ K ++ NGV V+TLD P +N++N ++ ++E ETN ++
Sbjct: 2 AAAAAEEFVKGRVTPNGVAVITLDRPKA-LNAMNLEMDLRYKAFLDEWETNPSVK 55
>11_01_0593 -
4705565-4705822,4705916-4706065,4706160-4706307,
4706400-4706479,4706573-4706739,4706830-4707078,
4707161-4707733,4707833-4707972,4708064-4708185,
4708622-4708743,4708877-4709105
Length = 745
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = -1
Query: 670 QEGKLTDLQFPNFXALSAFTVLPVRARSKVVGMEVRAGNLCVPPPPGKSPNMTSVVQIL 494
Q GKLT L PN LP + V A +LC+ P P + P++ V+++L
Sbjct: 616 QGGKLTQLVDPN---------LPTEDHANKVERMTLAASLCIRPTPQRRPHIAVVLKLL 665
>10_02_0117 +
5471920-5472401,5472602-5472668,5472956-5473012,
5473301-5473538,5476504-5476611,5476868-5477111,
5478307-5478550,5478636-5478842
Length = 548
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -1
Query: 568 VRAGNLCVPPPPGKSPNMTSVV 503
+R G LCV P P K P+M +VV
Sbjct: 524 IRVGFLCVLPEPDKRPDMATVV 545
>07_03_0744 +
21121757-21122202,21122316-21122737,21122992-21123117,
21123198-21123319,21123413-21123623,21123955-21124192,
21124284-21124431,21124547-21124879
Length = 681
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -1
Query: 568 VRAGNLCVPPPPGKSPNMTSVVQIL 494
+ G LCV P PG+ P+++SV+ +L
Sbjct: 601 IHIGLLCVQPDPGERPHISSVIFML 625
>07_03_1765 - 29329350-29331290,29331705-29331827,29332205-29333026
Length = 961
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = +1
Query: 265 ISGKPGCFIAGADISMIENCKTKEEVVSL--SKRGHE 369
+ G G F G D S + NC K V+ L S+RG E
Sbjct: 578 VYGAQGAFYKGLDFSKVLNCDRKPAVLDLPPSRRGDE 614
>09_06_0229 + 21709510-21709532,21710021-21710041,21712386-21713577
Length = 411
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = -3
Query: 572 GGESR*SLCPSTAGQKSQHDFCSPNPVLESFTAMRYLHARAVSNPPPRQLPC 417
GGE S+CPS +S+H + E A A V+ P P PC
Sbjct: 2 GGEPETSICPSIESSQSKH----ATVLREMVAAAEAKAAIGVATPTPTAAPC 49
>03_06_0658 -
35335639-35335731,35335814-35335871,35336213-35336355,
35336624-35336703,35336916-35337075,35337531-35337668,
35338487-35338567,35338640-35338693,35339192-35339297,
35339615-35339682,35340076-35340225,35340401-35340519,
35341151-35341362,35342118-35342205,35342365-35342479,
35343083-35343274,35343809-35344018
Length = 688
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 511 KSCWDFCPAVEGHRDYLLSPPY 576
K+ WDF PAV G R + PP+
Sbjct: 314 KNLWDFVPAVPGDRFLSMLPPW 335
>03_06_0118 + 31795050-31796404,31796513-31797083
Length = 641
Score = 28.3 bits (60), Expect = 6.0
Identities = 20/54 (37%), Positives = 26/54 (48%)
Frame = -1
Query: 568 VRAGNLCVPPPPGKSPNMTSVVQILFWSLSQQCDIYMQEQSLIHLLDSCLVLRQ 407
++ G LC P PG P+M VVQ L + D+ E + HL S L L Q
Sbjct: 563 LKLGLLCSHPLPGARPSMRQVVQYL------EGDMPFPELTPTHLSFSMLALMQ 610
>10_08_1007 -
22210263-22210400,22210506-22210547,22210626-22210727,
22212239-22212337,22212413-22212473,22213311-22213432,
22217700-22217786,22217958-22218041,22218141-22218220,
22218404-22218467,22218904-22218972,22219099-22219179,
22219626-22219694,22220108-22220140
Length = 376
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/80 (21%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Frame = +1
Query: 259 VIISGKPGCFIAGADIS-MIENCKTKEEVVSLSKRGHEIFRR--IEQSRKPYIAAIQGSC 429
+I+ GK F AG D++ ++ + S +E I KP ++ + G
Sbjct: 81 LIVKGKGRAFCAGGDVAAVVRSINNDSWKYSAHFFRNEFLLNYIIATYNKPQVSLLTGIV 140
Query: 430 LGGGLETALACKYRIAVKDS 489
+GGG ++ ++R+ + +
Sbjct: 141 MGGGAGVSIHGRFRVVTEST 160
>10_08_0738 -
20212220-20212282,20212387-20212593,20212690-20212819,
20212919-20213089,20213311-20213433,20213517-20213618,
20214123-20214880
Length = 517
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/61 (31%), Positives = 26/61 (42%)
Frame = -1
Query: 607 LPVRARSKVVGMEVRAGNLCVPPPPGKSPNMTSVVQILFWSLSQQCDIYMQEQSLIHLLD 428
LP KV+ V A CV P G+ P M VV +L L + ++ + H D
Sbjct: 452 LPETPPPKVLKRAVLAALRCVDPDGGQRPTMGHVVHMLEDDLKFRDELQLARDLSPHASD 511
Query: 427 S 425
S
Sbjct: 512 S 512
>09_02_0103 - 4324578-4324639,4324848-4324983
Length = 65
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Frame = +2
Query: 29 ALKILRSRKELF---ISGVHSRKYAVPASQVHTKCKLVNGVY-VVTLDSP 166
A+ + RS L+ I+ HSR +V + VH +CKL+N Y +TL P
Sbjct: 14 AVPVARSSPPLYAVNITTSHSR--SVTSRFVHPRCKLINDNYSPITLSQP 61
>07_03_1001 - 23224372-23224385,23225451-23227374
Length = 645
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 580 VGMEVRAGNLCVPPPPGKSPNMTSVVQIL 494
V + ++ G LC P PG P+M +V+Q L
Sbjct: 610 VALVLKLGLLCSHPLPGARPSMRNVMQYL 638
>06_03_0021 +
15520342-15520443,15522217-15522867,15522980-15523186,
15523698-15523913,15523992-15524214,15525052-15525299,
15525385-15525563,15525803-15526056,15526237-15526388
Length = 743
Score = 27.9 bits (59), Expect = 7.9
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Frame = +3
Query: 465 ISHCCERLQNRIWTTEVMLGL--LPGGGGTQRL-PALTSIPTTLDLALTGKTVKADKAKK 635
+S + R + + +LG L G GGT + PAL S+P + + A
Sbjct: 87 MSEALQSFLKRRYESGTLLGAVGLGGSGGTALIAPALRSLPLGVPKLIVSTVASGQTAPY 146
Query: 636 LGNCRSVSFPS 668
+G V FPS
Sbjct: 147 VGTSDLVLFPS 157
>04_04_1100 + 30894575-30895012,30896082-30897044
Length = 466
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -3
Query: 491 LESFTAMRY-LHARAVSNPPPRQLPCIAAI 405
LE+FTA + LHARA ++PP + C +
Sbjct: 262 LEAFTAHLWQLHARAAASPPRHRRSCCMGV 291
>03_06_0497 - 34332310-34334415
Length = 701
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1
Query: 568 VRAGNLCVPPPPGKSPNMTSVVQIL 494
++ G LC P P + P+M VVQIL
Sbjct: 609 LKLGLLCSHPDPRRRPSMRQVVQIL 633
>01_06_0515 -
29959149-29959253,29959510-29959633,29959702-29959793,
29959921-29960003,29960573-29960654,29960707-29960784,
29960875-29960967,29961647-29961734,29961822-29961991
Length = 304
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/44 (22%), Positives = 23/44 (52%)
Frame = -1
Query: 340 LLPLFCSFRSCLYQPLQ*SIQACLI**LHFNTRICFNFIYDVTN 209
++ + + C Y + + AC+ +H + ICF ++++ TN
Sbjct: 162 IIAMVVEYAGCCYSIVLKNSHACVEGAMHHDCPICFEYLFESTN 205
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,891,305
Number of Sequences: 37544
Number of extensions: 435197
Number of successful extensions: 1654
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1652
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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