Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060072.seq
         (685 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    23   3.6  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   4.7  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   6.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   6.3  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    21   8.3  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    21   8.3  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   8.3  

>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +3

Query: 312 DRKLQNKGRSCQSV*KRT*NIQKNRTITETVYCRNTRQL 428
           DRK + K +  + +   + N   N    + +YC N R+L
Sbjct: 69  DRKEREKSKEHKIISSLSNNYNYNNNNYKKLYCNNYRKL 107


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = -1

Query: 502 QILFWSLSQQCDIYMQEQSLIHLLDSCLVLRQYTVSVIV 386
           Q L +  +Q+ D Y      +++L  CL     T++ I+
Sbjct: 289 QRLLYVYAQESDYYPDLNEWLYILSGCLYYFSTTINPIL 327


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 35  KILRSRKELFISGVHSRKYAV 97
           ++LR RKELFI+ V    Y +
Sbjct: 409 RLLRKRKELFIAIVCFVSYLI 429


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 35  KILRSRKELFISGVHSRKYAV 97
           ++LR RKELFI+ V    Y +
Sbjct: 462 RLLRKRKELFIAIVCFVSYLI 482


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = +3

Query: 312 DRKLQNKGRSCQSV*KRT*NIQKNRTITETVYCRNTRQL 428
           DRK + K +  + +   + N   N    + +YC N ++L
Sbjct: 69  DRKEREKSKEHKIISSLSNNYNYNNNNYKKLYCNNYKKL 107


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = +3

Query: 312 DRKLQNKGRSCQSV*KRT*NIQKNRTITETVYCRNTRQL 428
           DRK + K +  + +   + N   N    + +YC N ++L
Sbjct: 69  DRKEREKSKEHKIISSLSNNYNYNNNNYKKLYCNNYKKL 107


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 279 RLA*YNDCTSIPEFVSISFTMLLTSSITWVLSEF 178
           +L  ++D TS+ E  S    M   S ++W  S+F
Sbjct: 78  KLMEFDDWTSVMELHSWMTLMWTDSHLSWKPSDF 111


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,163
Number of Sequences: 438
Number of extensions: 4555
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)