Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060071.seq
         (659 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22...    25   9.7  
SPBC3B9.06c |apg3||autophagy associated protein Apg3 |Schizosacc...    25   9.7  

>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -1

Query: 410 NRIE*YNQHQK*-KLSVLVYKSERFKGFKALTAFRYCLSFAQIAFESHEGLS 258
           N+I  +   +K  KLS+L  +S R   F+ L    +CL   +  + SH GL+
Sbjct: 180 NKITKFENFEKLQKLSLLSIQSNRITQFENLACLSHCL---RELYVSHNGLT 228


>SPBC3B9.06c |apg3||autophagy associated protein Apg3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 275

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 301 YRLHKSPSSLTKDFHNIGLL 242
           +R H +P+S T DF N G++
Sbjct: 12  WREHITPASKTSDFENTGMI 31


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,202,304
Number of Sequences: 5004
Number of extensions: 39644
Number of successful extensions: 79
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)