Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060071.seq
         (659 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38524| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_50340| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_14338| Best HMM Match : Spore_permease (HMM E-Value=0.75)           28   7.7  

>SB_38524| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 433

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +1

Query: 328 LKPLKRSDLYTRTDNFYFWCWLYYSIRF*MPFLFFX*LDEFTISK 462
           +KPLKR  L TR  +     W+Y  + F +P  +F  +++   +K
Sbjct: 135 VKPLKRKSLLTRPFSLLLSAWVYAGVLF-LPTFYFTKVEQLLTNK 178


>SB_50340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
 Frame = +1

Query: 298 DKQYLKAVKALKPLKRSDLYTRTDNFYFWCWLYYSI-RF*MPFLFFX*LDEFTISKLIRF 474
           D+Q +K + A++ LKRS ++ R D    +C L  SI  +  P   +  L EF +S  I  
Sbjct: 11  DEQKMKRIYAIRILKRSGVHVR-DIVEVYCTLIRSILEYGAP--VYSNLTEF-LSNAIER 66

Query: 475 HYSRGFRSFTLKVPYND 525
              R  +     VPY+D
Sbjct: 67  VQQRALKIIFPGVPYSD 83


>SB_14338| Best HMM Match : Spore_permease (HMM E-Value=0.75)
          Length = 367

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +1

Query: 103 RKMALVFLSHPGCVVNFYEISFN*CRVKSESNILMNL 213
           R++ L FL  PG +   Y I ++ CR+ + S  ++++
Sbjct: 5   RRIVLSFLGEPGSITCLYLIHYHRCRLTNVSVCILSI 41


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,339,897
Number of Sequences: 59808
Number of extensions: 257207
Number of successful extensions: 326
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 326
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)