Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060071.seq
         (659 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     25   0.48 
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   2.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.4  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   6.0  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   7.9  

>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +2

Query: 266 LRETRRRFVQTISNI*KQSRL*SP*NVLIYIRELIISIFGVGYIILYGFKC 418
           +R+T  +  +T+    K   +     V I   E+I SI G G IIL    C
Sbjct: 178 MRDTMNKIAETLDEDTKNKLIEESKTVFILNNEIIRSIQGTGTIILKKTVC 228


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/25 (36%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +3

Query: 171 LVSCKKRIQHFNESAMLIHI-VSDL 242
           L++C+KR+       ML+H+ ++DL
Sbjct: 61  LITCRKRVSKSRIHIMLMHLAIADL 85


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -3

Query: 87   NQLGLSRNTIIYQLKNCLCFHSGQIRL 7
            ++L LSR+   ++LK  LC ++ Q+ L
Sbjct: 1449 DELQLSRHATSHELKGLLCGNTYQLYL 1475


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -3

Query: 87   NQLGLSRNTIIYQLKNCLCFHSGQIRL 7
            ++L LSR+   ++LK  LC ++ Q+ L
Sbjct: 1445 DELQLSRHATSHELKGLLCGNTYQLYL 1471


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 98  LSLTISSD*VVIQLYIN*KIACAFTPVKFV 9
           ++L I+S  V I L  +  IAC F+P  ++
Sbjct: 875 VALRITSMSVTISLSASVTIACLFSPKLYI 904


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -3

Query: 102 HTIAHNQLGLSR 67
           H I H+Q+G+SR
Sbjct: 430 HRIRHSQIGISR 441


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,583
Number of Sequences: 438
Number of extensions: 2351
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)