BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV060071.seq (659 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g59453.1 68414.m06679 transcription factor-related weak simil... 28 6.3 At1g59077.1 68414.m06670 hypothetical protein 28 6.3 At1g58766.1 68414.m06659 hypothetical protein 28 6.3 At5g45150.1 68418.m05543 ribonuclease III family protein similar... 27 8.4 At1g52450.1 68414.m05921 ubiquitin carboxyl-terminal hydrolase-r... 27 8.4 At1g52430.1 68414.m05919 ubiquitin carboxyl-terminal hydrolase-r... 27 8.4 >At1g59453.1 68414.m06679 transcription factor-related weak similarity to TFIIIC Box B-binding subunit [Homo sapiens] GI:442362 Length = 1729 Score = 27.9 bits (59), Expect = 6.3 Identities = 12/25 (48%), Positives = 16/25 (64%) Frame = +1 Query: 61 CITTQSELIVSDSMRKMALVFLSHP 135 CI Q L+VS ++ + LVFLS P Sbjct: 1173 CIQVQESLVVSTAVELLKLVFLSMP 1197 >At1g59077.1 68414.m06670 hypothetical protein Length = 665 Score = 27.9 bits (59), Expect = 6.3 Identities = 12/25 (48%), Positives = 16/25 (64%) Frame = +1 Query: 61 CITTQSELIVSDSMRKMALVFLSHP 135 CI Q L+VS ++ + LVFLS P Sbjct: 109 CIQVQESLVVSTAVELLKLVFLSMP 133 >At1g58766.1 68414.m06659 hypothetical protein Length = 665 Score = 27.9 bits (59), Expect = 6.3 Identities = 12/25 (48%), Positives = 16/25 (64%) Frame = +1 Query: 61 CITTQSELIVSDSMRKMALVFLSHP 135 CI Q L+VS ++ + LVFLS P Sbjct: 109 CIQVQESLVVSTAVELLKLVFLSMP 133 >At5g45150.1 68418.m05543 ribonuclease III family protein similar to CAF protein (RNA helicase/RNAseIII) [Arabidopsis thaliana] GI:6102610; contains Pfam profiles PF00035: Double-stranded RNA binding motif, PF00636 RNase3 domain Length = 957 Score = 27.5 bits (58), Expect = 8.4 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 1/67 (1%) Frame = +2 Query: 215 DVNSHRK*FEESYVMKVLRETRRRFVQ-TISNI*KQSRL*SP*NVLIYIRELIISIFGVG 391 D+ S +K E S ++R V ISN+ K L N L++ E+ S+ V Sbjct: 360 DIKSKKKQAENSLAYHMIRALESSLVSLVISNLQKPKSLDEKNNPLLFSSEMDSSVEAVE 419 Query: 392 YIILYGF 412 I+ Y F Sbjct: 420 KILNYSF 426 >At1g52450.1 68414.m05921 ubiquitin carboxyl-terminal hydrolase-related contains Pfam profiles PF00443: Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein of unknown function (DUF629), PF04781: Protein of unknown function (DUF627) Length = 1136 Score = 27.5 bits (58), Expect = 8.4 Identities = 13/35 (37%), Positives = 21/35 (60%) Frame = -2 Query: 157 RRNSQRIPGVRGKLKPFFSYYRSQSARTES*YNYI 53 + N+QR V L+ FF+ + S+S +TE Y+ I Sbjct: 838 KNNTQRFQQVPSALQHFFNAFVSESIKTEGVYSCI 872 >At1g52430.1 68414.m05919 ubiquitin carboxyl-terminal hydrolase-related contains Pfam profiles PF00443: Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein of unknown function (DUF629), PF04781: Protein of unknown function (DUF627) Length = 1136 Score = 27.5 bits (58), Expect = 8.4 Identities = 13/35 (37%), Positives = 21/35 (60%) Frame = -2 Query: 157 RRNSQRIPGVRGKLKPFFSYYRSQSARTES*YNYI 53 + N+QR V L+ FF+ + S+S +TE Y+ I Sbjct: 838 KNNTQRFQQVPSALQHFFNAFVSESIKTEGVYSCI 872 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,848,829 Number of Sequences: 28952 Number of extensions: 183073 Number of successful extensions: 348 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 346 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 348 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1383534864 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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