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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060071.seq
         (659 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g59453.1 68414.m06679 transcription factor-related weak simil...    28   6.3  
At1g59077.1 68414.m06670 hypothetical protein                          28   6.3  
At1g58766.1 68414.m06659 hypothetical protein                          28   6.3  
At5g45150.1 68418.m05543 ribonuclease III family protein similar...    27   8.4  
At1g52450.1 68414.m05921 ubiquitin carboxyl-terminal hydrolase-r...    27   8.4  
At1g52430.1 68414.m05919 ubiquitin carboxyl-terminal hydrolase-r...    27   8.4  

>At1g59453.1 68414.m06679 transcription factor-related weak similarity
            to TFIIIC Box B-binding subunit [Homo sapiens] GI:442362
          Length = 1729

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 61   CITTQSELIVSDSMRKMALVFLSHP 135
            CI  Q  L+VS ++  + LVFLS P
Sbjct: 1173 CIQVQESLVVSTAVELLKLVFLSMP 1197


>At1g59077.1 68414.m06670 hypothetical protein
          Length = 665

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 61  CITTQSELIVSDSMRKMALVFLSHP 135
           CI  Q  L+VS ++  + LVFLS P
Sbjct: 109 CIQVQESLVVSTAVELLKLVFLSMP 133


>At1g58766.1 68414.m06659 hypothetical protein
          Length = 665

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 61  CITTQSELIVSDSMRKMALVFLSHP 135
           CI  Q  L+VS ++  + LVFLS P
Sbjct: 109 CIQVQESLVVSTAVELLKLVFLSMP 133


>At5g45150.1 68418.m05543 ribonuclease III family protein similar to
           CAF protein (RNA helicase/RNAseIII) [Arabidopsis
           thaliana] GI:6102610; contains Pfam profiles PF00035:
           Double-stranded RNA binding motif, PF00636 RNase3 domain
          Length = 957

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = +2

Query: 215 DVNSHRK*FEESYVMKVLRETRRRFVQ-TISNI*KQSRL*SP*NVLIYIRELIISIFGVG 391
           D+ S +K  E S    ++R      V   ISN+ K   L    N L++  E+  S+  V 
Sbjct: 360 DIKSKKKQAENSLAYHMIRALESSLVSLVISNLQKPKSLDEKNNPLLFSSEMDSSVEAVE 419

Query: 392 YIILYGF 412
            I+ Y F
Sbjct: 420 KILNYSF 426


>At1g52450.1 68414.m05921 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF00443:
           Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
           of unknown function (DUF629), PF04781: Protein of
           unknown function (DUF627)
          Length = 1136

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -2

Query: 157 RRNSQRIPGVRGKLKPFFSYYRSQSARTES*YNYI 53
           + N+QR   V   L+ FF+ + S+S +TE  Y+ I
Sbjct: 838 KNNTQRFQQVPSALQHFFNAFVSESIKTEGVYSCI 872


>At1g52430.1 68414.m05919 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF00443:
           Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
           of unknown function (DUF629), PF04781: Protein of
           unknown function (DUF627)
          Length = 1136

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -2

Query: 157 RRNSQRIPGVRGKLKPFFSYYRSQSARTES*YNYI 53
           + N+QR   V   L+ FF+ + S+S +TE  Y+ I
Sbjct: 838 KNNTQRFQQVPSALQHFFNAFVSESIKTEGVYSCI 872


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,848,829
Number of Sequences: 28952
Number of extensions: 183073
Number of successful extensions: 348
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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