Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060070.seq
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    29   0.63 
SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces po...    27   1.9  
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp...    27   3.4  
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su...    27   3.4  

>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 17/68 (25%), Positives = 31/68 (45%)
 Frame = -2

Query: 316 AADILQKYQIPHLVTRQTDSTLMKIAYRYFNGQVSQHSPRNNIHVTSVSRHIYITFQRTV 137
           A  +LQ   +P ++  + +    +      +G+VS+ S  +       S+ +YITF    
Sbjct: 616 ALSMLQNVIMPDVLAFEREKKRRQTHRSVSSGEVSRESSESRNTNAKASKRVYITFTGYD 675

Query: 136 STPSLYNL 113
             PS+ NL
Sbjct: 676 KKPSIDNL 683


>SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 337

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -2

Query: 247 KIAYRYFNGQVSQHSPRNNIHVTSVSRHIYITFQ 146
           K +YR FNG +      NN+  ++ +R +Y +FQ
Sbjct: 26  KCSYRNFNGLLQARFQSNNLSWSNRNRVVYKSFQ 59


>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
           subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1210

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -2

Query: 370 GASGRT*GRNKSNWLVYQAADILQKYQIPHLVTRQ 266
           G  G T G  +   L Y A DILQK  +PH+ T +
Sbjct: 321 GKRGSTTGVTREKRLRY-AHDILQKELLPHITTME 354


>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
           subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 536 FYRDVRIIFFTFLLQKSIFIIKKKRFLITF 447
           FY    IIF   +L+ S +++ K R ++TF
Sbjct: 19  FYETRHIIFMDAILRHSAYVLHKIRTILTF 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,654,638
Number of Sequences: 5004
Number of extensions: 54758
Number of successful extensions: 131
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)