Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060070.seq
         (686 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0086 + 19610899-19610992,19613399-19613652,19613744-196139...    29   4.6  
01_06_1336 + 36396904-36397014,36397141-36397191,36397681-363977...    29   4.6  

>02_04_0086 +
           19610899-19610992,19613399-19613652,19613744-19613955,
           19614059-19614320,19614432-19614728
          Length = 372

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -2

Query: 286 PHLVTRQTDSTLMKIAYRYFNGQVSQHSPRNNIH 185
           P +++R+  + + K AYR + GQV Q     ++H
Sbjct: 254 PAILSREDLTVIPKFAYRTYAGQVRQQGEHESLH 287


>01_06_1336 +
           36396904-36397014,36397141-36397191,36397681-36397757,
           36397876-36397963,36398616-36398891,36399002-36399250,
           36400315-36400398
          Length = 311

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +1

Query: 235 YMQFSLTCCLFVV*QDEGFDIFEEYLPPDTPTNWIYFDLKFD 360
           Y+   L    F V +  G    E+Y+PPD P+ W   +  +D
Sbjct: 104 YLDLYLIHWPFRVKKGSGISNTEDYIPPDIPSTWGAMEKLYD 145


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,350,434
Number of Sequences: 37544
Number of extensions: 285900
Number of successful extensions: 579
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)