Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060069.seq
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    29   0.82 
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    27   1.9  
SPAC1782.03 |||microfibrillar-associated protein family protein|...    26   5.8  

>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
           Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 28.7 bits (61), Expect = 0.82
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = +2

Query: 323 HWIPRPASRRTPDAVHERLPRGTHGDSVYRYRHKPSACLRSLTLQQPRLRLSKGK 487
           H IP P  R++  A  ++    +  +  Y  RH+ S    S T  +  LR SKGK
Sbjct: 123 HEIPIPKKRKSKPAPKQKKSVASDDEDAYDKRHRFSINSASGTEIRTSLRSSKGK 177


>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 273 ESDDLFKRLSRESEVRYTGYRDRPPEE 353
           + DD+FKRL ++ + R   YR R   E
Sbjct: 390 QEDDIFKRLKQQEDRRNENYRRRQQRE 416


>SPAC1782.03 |||microfibrillar-associated protein family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 355

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 560 ERLDGAGCLELDEERAAIEDAALRDQIEXYNQRLRDFE 673
           ++ D    LEL+ E+ AIE+  L +  E   Q L+D E
Sbjct: 205 KKRDKEKSLELEREKMAIEERRLMNSEEREAQDLKDAE 242


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,602,368
Number of Sequences: 5004
Number of extensions: 51989
Number of successful extensions: 156
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)