Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060069.seq
         (678 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0071 - 507595-507762,508027-508155,508567-508752,509306-50...    29   3.4  
02_05_0862 - 32305562-32305654,32305935-32306033,32306178-323062...    29   3.4  
11_01_0382 - 2892887-2893161,2893593-2893717,2893801-2894013,289...    29   4.5  

>08_01_0071 -
           507595-507762,508027-508155,508567-508752,509306-509381,
           509477-509559,509778-509885,510420-510497,511762-511827
          Length = 297

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 482 GKWKSSHRIRFIMNGVCVRWRGWIDLERLDGAGCLELDEERA 607
           G+W ++       NG  V + GW + E +D A    L+EE A
Sbjct: 110 GEWYNATIEELTENGYYVSFEGWGNKEEVDPANVRSLEEEAA 151


>02_05_0862 -
           32305562-32305654,32305935-32306033,32306178-32306259,
           32307407-32307764,32308745-32309521,32309612-32309716,
           32309803-32309911,32311016-32311024
          Length = 543

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +1

Query: 184 MLPFDSIYEQPKPRF-IFKMPRVVPIKKPNSN 276
           M P DSI   PK R     +P   PIK+PNSN
Sbjct: 360 MSPDDSISSSPKARHSCSSLPSGHPIKEPNSN 391


>11_01_0382 -
           2892887-2893161,2893593-2893717,2893801-2894013,
           2894101-2895363,2895669-2895712
          Length = 639

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -2

Query: 656 VDCTSRSDHVMLHLQSLLSPRPAQDNRRHRAVPDRSNLSILHKHRS 519
           + C+   D  +LH   LL P P       R++P+  N+ ++   RS
Sbjct: 240 IPCSENMD--VLHKMQLLKPSPLDKKYVDRSIPNSENMDVVLMRRS 283


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,227,422
Number of Sequences: 37544
Number of extensions: 389547
Number of successful extensions: 1240
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1240
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)