Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060067.seq
         (591 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   0.89 
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3...    27   2.0  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    27   2.7  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 28.3 bits (60), Expect = 0.89
 Identities = 28/132 (21%), Positives = 47/132 (35%), Gaps = 6/132 (4%)
 Frame = +3

Query: 198 PGTVSSTFDHPFSTPXLRSTGTETKSNSVTVQSLPNVSSIIRG--YRDAYLVNLEAVVXT 371
           P T +ST     + P   S+   T +N  T  S+P  S+ +              +V  T
Sbjct: 400 PPTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPYT 459

Query: 372 SAPSXKXPVTVDLCWTTADVTVEGVNVLXXPSSARITIGGLALMASATLPCDLGYI---- 539
           S P    P+T   C T+  +      V   P +        ++  ++T      Y     
Sbjct: 460 STPVTSTPLTTTNCTTSTSIPYTSTPVTSTPLTTTNCTTSTSVPYTSTPVTSSNYTISSS 519

Query: 540 NPIIKSPIPYTN 575
            P+  +P+  TN
Sbjct: 520 TPVTSTPVTTTN 531



 Score = 25.4 bits (53), Expect = 6.2
 Identities = 22/111 (19%), Positives = 39/111 (35%), Gaps = 4/111 (3%)
 Frame = +3

Query: 255 TGTETKSNSVTVQSLPNVSSIIRGYRDAYLVNLEAVVXTSAPSXKXPVTVDLCWTTADVT 434
           T T   S  +T  +    +S+   Y    + +    + +S P    PVT   C T+  V 
Sbjct: 482 TSTPVTSTPLTTTNCTTSTSV--PYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVL 539

Query: 435 VEGVNVLXXPSSARITIGGLALMASATLPCDLGYI----NPIIKSPIPYTN 575
                V   P +        ++  ++T      Y      P+  +P+  TN
Sbjct: 540 YTSTPVTSTPLATTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTN 590


>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 473 SHYYWRSRPYGISYPPLRSRLHQPDHQIPDSI 568
           ++Y  RSR +GI  PP R  L  P  ++ D +
Sbjct: 157 AYYDSRSRLHGIQPPPKRRTLSPPPRRLADPV 188


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +3

Query: 201 GTVSSTFDHPFSTPXLRSTGTETKSNSVTVQSLPNVSSI 317
           G+V S+FD P      R + T   S  +T  S PN  S+
Sbjct: 564 GSVRSSFDFPDRPVSRRPSSTSRSSVKITGPSSPNARSM 602


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.126    0.355 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,964,027
Number of Sequences: 5004
Number of extensions: 30912
Number of successful extensions: 134
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)